Wall clock time and date at job start Tue Mar 31 2020 15:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39623 * 120.06626 * 64.59872 * 3 2 1 5 5 C 1.37784 * 119.93248 * 179.80758 * 4 3 2 6 6 C 1.39083 * 120.06687 * 0.44836 * 5 4 3 7 7 N 1.39569 * 119.93516 * 179.76297 * 6 5 4 8 8 C 1.34772 * 120.00279 * 213.52911 * 7 6 5 9 9 O 1.21384 * 119.99862 * 5.27982 * 8 7 6 10 10 C 1.49339 * 120.00437 * 185.27986 * 8 7 6 11 11 O 1.21362 * 119.99738 * 359.97438 * 10 8 7 12 12 N 1.34776 * 119.99859 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99718 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47331 * 180.02562 * 13 12 10 15 15 C 1.53011 * 109.46972 * 299.99879 * 14 13 12 16 16 C 1.53001 * 109.47384 * 59.99577 * 14 13 12 17 17 C 1.52998 * 109.47321 * 180.02562 * 14 13 12 18 18 C 1.50708 * 109.47142 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99784 * 0.02562 * 18 17 14 20 20 C 1.37870 * 119.99842 * 180.02562 * 18 17 14 21 21 N 1.31514 * 120.00227 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99784 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47334 * 89.99771 * 22 20 18 24 24 H 1.48501 * 109.47057 * 209.99541 * 22 20 18 25 25 H 1.48500 * 109.47267 * 329.99509 * 22 20 18 26 26 C 1.39072 * 120.12793 * 359.78484 * 6 5 4 27 27 C 1.37787 * 120.06700 * 0.02562 * 26 6 5 28 28 H 4.51996 * 14.04475 * 0.02562 * 4 2 1 29 29 H 1.07996 * 120.03584 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.97092 * 180.18754 * 5 4 3 31 31 H 0.97002 * 120.00187 * 33.52396 * 7 6 5 32 32 H 0.97000 * 120.00520 * 0.02562 * 12 10 8 33 33 H 1.09003 * 109.46849 * 299.99880 * 13 12 10 34 34 H 1.09003 * 109.47275 * 59.99645 * 13 12 10 35 35 H 1.08997 * 109.46464 * 59.99697 * 15 14 13 36 36 H 1.08997 * 109.46769 * 180.02562 * 15 14 13 37 37 H 1.09003 * 109.46761 * 300.00027 * 15 14 13 38 38 H 1.09003 * 109.47049 * 60.00171 * 16 14 13 39 39 H 1.08994 * 109.47181 * 180.02562 * 16 14 13 40 40 H 1.08996 * 109.47153 * 300.00311 * 16 14 13 41 41 H 1.08999 * 109.46892 * 299.99149 * 17 14 13 42 42 H 1.08998 * 109.47425 * 59.99885 * 17 14 13 43 43 H 0.97003 * 119.99980 * 180.02562 * 21 20 18 44 44 H 1.07991 * 119.96329 * 179.97438 * 26 6 5 45 45 H 1.08001 * 120.02836 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3058 -0.5174 -1.0915 5 6 4.6836 -0.5118 -1.0904 6 6 5.3774 0.0007 0.0007 7 7 6.7731 0.0005 0.0011 8 6 7.4466 -0.1693 1.1560 9 8 6.8433 -0.4175 2.1796 10 6 8.9353 -0.0522 1.1765 11 8 9.5386 0.1955 0.1530 12 7 9.6087 -0.2215 2.3317 13 6 11.0690 -0.1061 2.3518 14 6 11.5796 -0.3414 3.7747 15 6 10.9724 0.7030 4.7137 16 6 11.1723 -1.7416 4.2378 17 6 13.1047 -0.2202 3.7959 18 6 13.6075 -0.4514 5.1977 19 1 12.9092 -0.6639 5.9937 20 6 14.9590 -0.3915 5.4639 21 7 15.8093 -0.1331 4.4944 22 14 15.5823 -0.6788 7.2012 23 1 15.8608 -2.1246 7.3945 24 1 16.8297 0.0983 7.4143 25 1 14.5522 -0.2384 8.1759 26 6 4.6831 0.5129 1.0914 27 6 3.3053 0.5135 1.0943 28 1 -1.0499 0.0002 -0.0007 29 1 2.7676 -0.9188 -1.9375 30 1 5.2255 -0.9095 -1.9357 31 1 7.2584 0.1225 -0.8299 32 1 9.1265 -0.4198 3.1496 33 1 11.5016 -0.8504 1.6833 34 1 11.3593 0.8913 2.0215 35 1 9.8860 0.6171 4.6986 36 1 11.3366 0.5356 5.7273 37 1 11.2627 1.7006 4.3838 38 1 11.6048 -2.4856 3.5689 39 1 11.5356 -1.9090 5.2516 40 1 10.0858 -1.8275 4.2228 41 1 13.5375 -0.9640 3.1270 42 1 13.3945 0.7775 3.4663 43 1 16.7602 -0.0914 4.6817 44 1 5.2245 0.9098 1.9374 45 1 2.7667 0.9111 1.9418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339889008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:08 Heat of formation + Delta-G solvation = -18.795344 kcal Electronic energy + Delta-G solvation = -26257.965475 eV Core-core repulsion = 22433.890155 eV Total energy + Delta-G solvation = -3824.075320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.23851 -40.70513 -39.48807 -38.67507 -36.58425 -35.27722 -34.08270 -33.88866 -32.09815 -30.50418 -29.21120 -28.21674 -27.98250 -26.18918 -24.80153 -23.98365 -23.31560 -21.47591 -20.45229 -19.94105 -19.39454 -18.57976 -18.32462 -17.70152 -17.26103 -16.67672 -16.59080 -16.38988 -16.10460 -15.60428 -15.47293 -15.02718 -14.88086 -14.75143 -14.46449 -14.37743 -14.22729 -13.94279 -13.76664 -13.48722 -12.89207 -12.86648 -12.77318 -12.68843 -12.61862 -12.33610 -12.31057 -12.23745 -11.99714 -11.55787 -11.43369 -11.22429 -11.08889 -10.89600 -10.73153 -10.49763 -10.30618 -10.04472 -9.07648 -8.13203 -6.20157 -0.36297 0.33147 0.34227 1.12074 1.43242 1.43954 1.53788 1.80420 1.86356 2.13797 2.43044 2.50189 2.97622 3.21700 3.26250 3.38559 3.85808 3.89960 3.91182 4.05177 4.19767 4.27202 4.38349 4.46269 4.65259 4.69060 4.71139 4.72313 4.94099 4.97869 4.99712 5.11722 5.13263 5.18337 5.22845 5.35365 5.41836 5.43890 5.50556 5.52119 5.56720 5.75387 5.79397 5.88561 5.91187 6.21668 6.33096 6.57372 6.60857 6.80343 6.94542 7.47398 8.98921 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033747 B = 0.001876 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.505919 B =14921.366527 C =15474.174503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.196 4.196 3 C -0.017 4.017 4 C -0.076 4.076 5 C -0.130 4.130 6 C 0.137 3.863 7 N -0.633 5.633 8 C 0.516 3.484 9 O -0.513 6.513 10 C 0.506 3.494 11 O -0.542 6.542 12 N -0.678 5.678 13 C 0.137 3.863 14 C -0.067 4.067 15 C -0.125 4.125 16 C -0.125 4.125 17 C 0.041 3.959 18 C -0.515 4.515 19 H 0.070 0.930 20 C -0.002 4.002 21 N -0.936 5.936 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.262 1.262 26 C -0.132 4.132 27 C -0.083 4.083 28 H 0.258 0.742 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.433 0.567 32 H 0.418 0.582 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.063 0.937 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.259 0.741 44 H 0.130 0.870 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.875 -0.111 -10.706 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.196 4.196 3 C -0.017 4.017 4 C -0.094 4.094 5 C -0.150 4.150 6 C 0.043 3.957 7 N -0.281 5.281 8 C 0.298 3.702 9 O -0.388 6.388 10 C 0.287 3.713 11 O -0.420 6.420 12 N -0.331 5.331 13 C 0.014 3.986 14 C -0.067 4.067 15 C -0.182 4.182 16 C -0.182 4.182 17 C 0.004 3.996 18 C -0.553 4.553 19 H 0.088 0.912 20 C -0.199 4.199 21 N -0.577 5.577 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.186 1.186 26 C -0.152 4.152 27 C -0.101 4.101 28 H 0.274 0.726 29 H 0.171 0.829 30 H 0.178 0.822 31 H 0.273 0.727 32 H 0.257 0.743 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.068 0.932 44 H 0.147 0.853 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -28.596 -0.075 -10.697 30.532 hybrid contribution 1.090 -0.020 0.790 1.346 sum -27.506 -0.094 -9.907 29.236 Atomic orbital electron populations 1.25780 0.96552 0.97409 0.97187 1.20352 0.92581 1.03254 1.03392 1.16208 0.87382 1.02345 0.95814 1.21267 0.93208 0.97275 0.97678 1.21110 0.94237 1.00726 0.98950 1.18021 0.81678 0.98977 0.96987 1.43050 1.05035 1.68791 1.11188 1.20143 0.88242 0.77558 0.84219 1.90794 1.69745 1.45206 1.33023 1.19954 0.87905 0.78999 0.84491 1.90779 1.69975 1.48185 1.33079 1.45870 1.08334 1.68001 1.10855 1.21516 0.77464 1.01625 0.98018 1.20748 0.96714 0.96841 0.92402 1.21730 0.99250 0.97510 0.99750 1.21727 0.99953 0.94859 1.01710 1.18957 0.89779 0.94882 0.95994 1.21596 0.91944 1.46418 0.95359 0.91182 1.25879 0.97728 0.95602 1.00721 1.70103 1.02586 1.51122 1.33863 0.85588 0.77778 0.78015 0.80500 1.20264 1.21555 1.18630 1.21098 0.94372 1.00752 0.98962 1.21194 0.93049 0.98031 0.97830 0.72582 0.82877 0.82151 0.72656 0.74258 0.91715 0.91731 0.91822 0.92540 0.93825 0.93818 0.92503 0.91851 0.98992 0.98980 0.93186 0.85252 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 19.25 74.32 1.43 -0.27 16 2 C -0.20 -3.18 13.23 30.01 0.40 -2.79 16 3 C -0.02 -0.29 5.73 -21.37 -0.12 -0.41 16 4 C -0.08 -1.06 9.74 22.50 0.22 -0.84 16 5 C -0.13 -1.78 9.94 22.37 0.22 -1.56 16 6 C 0.14 2.51 6.27 38.31 0.24 2.75 16 7 N -0.63 -11.79 5.31 -304.74 -1.62 -13.41 16 8 C 0.52 12.17 7.62 87.24 0.66 12.84 16 9 O -0.51 -13.68 14.16 -3.35 -0.05 -13.73 16 10 C 0.51 13.63 7.89 87.23 0.69 14.31 16 11 O -0.54 -16.82 16.48 -3.28 -0.05 -16.87 16 12 N -0.68 -18.47 4.95 -464.52 -2.30 -20.77 16 13 C 0.14 4.49 4.56 86.38 0.39 4.89 16 14 C -0.07 -2.43 0.54 -52.18 -0.03 -2.46 16 15 C -0.13 -4.18 8.05 71.99 0.58 -3.60 16 16 C -0.13 -4.18 8.05 71.98 0.58 -3.60 16 17 C 0.04 2.03 4.04 29.85 0.12 2.15 16 18 C -0.52 -27.10 7.65 25.60 0.20 -26.90 16 19 H 0.07 3.48 5.68 -2.91 -0.02 3.47 16 20 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 21 N -0.94 -55.75 13.29 21.44 0.28 -55.46 16 22 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 C -0.13 -2.66 8.63 22.36 0.19 -2.47 16 27 C -0.08 -1.50 9.74 22.50 0.22 -1.28 16 28 H 0.26 0.56 7.80 -4.42 -0.03 0.52 16 29 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 31 H 0.43 6.46 8.29 -92.71 -0.77 5.69 16 32 H 0.42 10.34 5.63 -92.71 -0.52 9.81 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 1.70 6.86 -2.39 -0.02 1.69 16 36 H 0.06 2.04 6.61 -2.39 -0.02 2.02 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 40 H 0.06 1.70 6.86 -2.39 -0.02 1.68 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.13 2.87 6.41 -2.92 -0.02 2.85 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -67.90 383.55 4.48 -63.41 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -0.26 Total: 20.47 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 6.46 Total: -8.89 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -3.63 Total: -89.64 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.10 Total: -30.60 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.90 4.48 -63.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339889008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.619 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds