Wall clock time and date at job start Tue Mar 31 2020 14:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.47019 * 2 1 4 4 O 1.33495 * 126.72170 * 270.13003 * 3 2 1 5 5 N 1.20652 * 113.39233 * 180.34392 * 4 3 2 6 6 C 1.30874 * 112.10348 * 359.71736 * 5 4 3 7 7 C 1.48323 * 127.44558 * 180.02562 * 6 5 4 8 8 C 1.39370 * 120.11800 * 144.69952 * 7 6 5 9 9 C 1.38015 * 119.86721 * 179.78766 * 8 7 6 10 10 C 1.38326 * 120.12746 * 0.46358 * 9 8 7 11 11 C 1.38330 * 120.25114 * 359.79151 * 10 9 8 12 12 C 1.38008 * 120.12022 * 359.97194 * 11 10 9 13 13 C 1.37213 * 126.72206 * 90.00380 * 3 2 1 14 14 C 1.47279 * 128.58143 * 359.95882 * 13 3 2 15 15 O 1.21618 * 120.00151 * 269.70911 * 14 13 3 16 16 N 1.34776 * 120.00320 * 89.70439 * 14 13 3 17 17 C 1.46509 * 119.99370 * 0.02562 * 16 14 13 18 18 C 1.46497 * 120.00710 * 180.02562 * 16 14 13 19 19 H 1.09002 * 109.46725 * 0.02562 * 18 16 14 20 20 C 1.52997 * 109.47188 * 240.00300 * 18 16 14 21 21 C 1.50697 * 109.47081 * 119.99864 * 18 16 14 22 22 H 1.07999 * 120.00055 * 0.02562 * 21 18 16 23 23 C 1.37878 * 119.99687 * 180.02562 * 21 18 16 24 24 N 1.31511 * 120.00458 * 359.97438 * 23 21 18 25 25 Si 1.86805 * 119.99926 * 180.02562 * 23 21 18 26 26 H 1.48503 * 109.46980 * 89.99582 * 25 23 21 27 27 H 1.48493 * 109.47135 * 209.99651 * 25 23 21 28 28 H 1.48498 * 109.47274 * 330.00048 * 25 23 21 29 29 H 1.09007 * 109.47474 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47233 * 299.99895 * 1 2 3 31 31 H 1.09003 * 109.47087 * 60.00006 * 1 2 3 32 32 H 1.08998 * 109.46796 * 239.99341 * 2 1 3 33 33 H 1.09002 * 109.46605 * 119.99784 * 2 1 3 34 34 H 1.07997 * 120.06613 * 359.97438 * 8 7 6 35 35 H 1.08004 * 119.93309 * 180.23224 * 9 8 7 36 36 H 1.08002 * 119.87590 * 179.76270 * 10 9 8 37 37 H 1.07998 * 119.93789 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.06018 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.46975 * 269.99637 * 17 16 14 40 40 H 1.08995 * 109.47277 * 29.99688 * 17 16 14 41 41 H 1.09003 * 109.46743 * 150.00175 * 17 16 14 42 42 H 1.09002 * 109.47153 * 299.99573 * 20 18 16 43 43 H 1.09001 * 109.46832 * 179.97438 * 20 18 16 44 44 H 1.09004 * 109.47261 * 59.99745 * 20 18 16 45 45 H 0.96999 * 120.00480 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2961 2.1741 -1.0700 5 7 2.6942 3.2785 -0.7919 6 6 2.7632 3.4659 0.5015 7 6 3.2045 4.6902 1.2131 8 6 2.5981 5.0588 2.4127 9 6 3.0158 6.1966 3.0727 10 6 4.0275 6.9758 2.5410 11 6 4.6292 6.6177 1.3481 12 6 4.2230 5.4793 0.6819 13 6 2.3058 2.1942 1.0998 14 6 2.1806 1.8422 2.5244 15 8 1.1378 2.0533 3.1136 16 7 3.2215 1.2860 3.1752 17 6 4.4778 1.0320 2.4655 18 6 3.0969 0.9352 4.5921 19 1 2.0987 1.1956 4.9443 20 6 4.1412 1.7060 5.4021 21 6 3.3196 -0.5451 4.7646 22 1 3.5332 -1.1629 3.9049 23 6 3.2508 -1.1109 6.0201 24 7 2.9913 -0.3586 7.0671 25 14 3.5277 -2.9459 6.2342 26 1 4.9712 -3.2046 6.4683 27 1 2.7426 -3.4326 7.3967 28 1 3.0897 -3.6590 5.0075 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.8051 4.4536 2.8264 35 1 2.5492 6.4812 4.0043 36 1 4.3486 7.8675 3.0590 37 1 5.4184 7.2300 0.9373 38 1 4.6938 5.2004 -0.2493 39 1 4.4529 0.0338 2.0285 40 1 4.6045 1.7717 1.6750 41 1 5.3108 1.1016 3.1652 42 1 5.1392 1.4453 5.0498 43 1 4.0481 1.4454 6.4564 44 1 3.9800 2.7769 5.2773 45 1 2.9425 -0.7566 7.9503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340982715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:07 Heat of formation + Delta-G solvation = 46.338013 kcal Electronic energy + Delta-G solvation = -28724.288622 eV Core-core repulsion = 24903.037696 eV Total energy + Delta-G solvation = -3821.250926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.72783 -39.27602 -38.84619 -35.42706 -34.72325 -34.13922 -32.82351 -31.02232 -30.55475 -30.16740 -29.24519 -26.27995 -25.30275 -24.76502 -24.24550 -22.95868 -22.46879 -21.10998 -19.95144 -18.65917 -17.68888 -17.28552 -16.86906 -16.33741 -16.11759 -15.62768 -15.06398 -15.00123 -14.67463 -14.41902 -14.05895 -13.81656 -13.44001 -13.40785 -12.97359 -12.91249 -12.66434 -12.63757 -12.39721 -11.77208 -11.63987 -11.62347 -11.53947 -11.33463 -11.14712 -11.12987 -10.89277 -10.83627 -10.78235 -10.38668 -10.32130 -10.21782 -9.43501 -9.27595 -9.08563 -8.97183 -8.60441 -8.48260 -7.70490 -6.12211 -4.20560 0.88402 1.38060 1.48286 2.25374 2.90314 3.04963 3.23272 3.30825 3.32903 3.75380 3.77674 4.07511 4.35293 4.42455 4.87695 4.92412 4.95464 5.02512 5.09114 5.17223 5.18966 5.23740 5.36425 5.39469 5.52259 5.62839 5.70988 5.79200 5.83489 5.92802 5.97848 6.01687 6.03346 6.23247 6.24923 6.38835 6.47629 6.51035 6.71614 6.77974 6.90182 6.99333 7.33147 7.43022 7.65180 7.94514 8.11511 8.26637 8.40111 8.73240 8.90894 9.46051 10.93153 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.004715 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.908482 B = 5937.193667 C = 7641.919458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C 0.009 3.991 4 O 0.099 5.901 5 N -0.351 5.351 6 C 0.086 3.914 7 C -0.024 4.024 8 C -0.084 4.084 9 C -0.116 4.116 10 C -0.108 4.108 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.215 4.215 14 C 0.585 3.415 15 O -0.538 6.538 16 N -0.575 5.575 17 C 0.088 3.912 18 C 0.259 3.741 19 H 0.065 0.935 20 C -0.147 4.147 21 C -0.526 4.526 22 H 0.060 0.940 23 C 0.066 3.934 24 N -0.887 5.887 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.030 0.970 43 H 0.095 0.905 44 H 0.012 0.988 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 7.720 -12.693 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.054 4.054 4 O 0.034 5.966 5 N -0.054 5.054 6 C -0.074 4.074 7 C -0.025 4.025 8 C -0.103 4.103 9 C -0.134 4.134 10 C -0.127 4.127 11 C -0.143 4.143 12 C -0.110 4.110 13 C -0.222 4.222 14 C 0.369 3.631 15 O -0.417 6.417 16 N -0.305 5.305 17 C -0.056 4.056 18 C 0.159 3.841 19 H 0.083 0.917 20 C -0.205 4.205 21 C -0.565 4.565 22 H 0.078 0.922 23 C -0.136 4.136 24 N -0.525 5.525 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.113 0.887 44 H 0.031 0.969 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.869 8.527 -13.228 15.849 hybrid contribution 0.252 -1.302 0.844 1.572 sum 2.121 7.225 -12.384 14.494 Atomic orbital electron populations 1.21784 0.92976 1.02961 1.03070 1.20245 0.97236 0.85637 1.05175 1.24565 0.99765 0.96218 0.84807 1.84451 1.61382 1.17515 1.33204 1.73903 1.17065 0.98603 1.15875 1.22939 1.01388 0.94401 0.88627 1.17618 0.97879 0.91883 0.95080 1.21415 0.99097 0.96528 0.93248 1.21125 0.97473 0.94795 1.00028 1.21281 0.96051 0.99536 0.95798 1.21036 1.00474 0.96977 0.95829 1.21142 0.95925 0.94389 0.99516 1.22249 1.09566 0.94024 0.96378 1.16834 0.84343 0.78615 0.83285 1.90777 1.28286 1.55276 1.67321 1.48204 1.11282 1.57717 1.13334 1.21543 0.87696 0.99713 0.96602 1.19025 0.97700 0.94398 0.72941 0.91694 1.22097 0.98142 0.95752 1.04547 1.21274 1.49590 0.92213 0.93418 0.92222 1.24876 0.94785 0.98265 0.95711 1.69869 1.48320 1.35262 0.99012 0.86494 0.78137 0.84924 0.77841 1.20612 1.21085 1.19895 0.91036 0.91335 0.92268 0.89005 0.87868 0.84801 0.85306 0.85760 0.85649 0.85746 0.93137 0.93322 0.90512 0.95059 0.88650 0.96865 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.89 37.16 0.37 -1.39 16 2 C -0.04 -0.55 6.37 -27.89 -0.18 -0.73 16 3 C 0.01 0.14 6.79 -34.69 -0.24 -0.10 16 4 O 0.10 1.48 11.05 18.65 0.21 1.68 16 5 N -0.35 -5.63 12.05 34.60 0.42 -5.21 16 6 C 0.09 1.45 6.82 -80.22 -0.55 0.90 16 7 C -0.02 -0.37 5.87 -104.91 -0.62 -0.99 16 8 C -0.08 -1.34 9.32 -39.24 -0.37 -1.70 16 9 C -0.12 -1.55 10.03 -39.63 -0.40 -1.94 16 10 C -0.11 -1.23 10.04 -39.52 -0.40 -1.63 16 11 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 12 C -0.09 -1.21 9.78 -39.24 -0.38 -1.59 16 13 C -0.21 -3.79 4.37 -102.69 -0.45 -4.24 16 14 C 0.58 12.22 6.30 -12.59 -0.08 12.14 16 15 O -0.54 -13.02 15.79 5.26 0.08 -12.94 16 16 N -0.58 -12.16 2.75 -176.59 -0.49 -12.65 16 17 C 0.09 1.56 9.50 59.85 0.57 2.12 16 18 C 0.26 6.41 2.64 -69.09 -0.18 6.23 16 19 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 20 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 21 C -0.53 -13.70 8.37 -34.44 -0.29 -13.99 16 22 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 23 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 24 N -0.89 -24.38 11.32 55.43 0.63 -23.76 16 25 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.41 8.10 -51.93 -0.42 0.99 16 34 H 0.13 2.43 6.60 -52.49 -0.35 2.08 16 35 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.78 6.71 -51.93 -0.35 0.43 16 41 H 0.08 1.34 6.43 -51.93 -0.33 1.01 16 42 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 43 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -30.30 378.69 -8.04 -38.34 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.23 Total: 3.60 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.34 Total: -10.17 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.56 Total: -41.62 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.29 Total: -11.26 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.30 -8.04 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340982715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.677 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds