Wall clock time and date at job start Tue Mar 31 2020 14:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.47019 * 2 1 4 4 O 1.33495 * 126.72170 * 270.13003 * 3 2 1 5 5 N 1.20652 * 113.39233 * 180.34392 * 4 3 2 6 6 C 1.30874 * 112.10348 * 359.71736 * 5 4 3 7 7 C 1.48323 * 127.44558 * 180.02562 * 6 5 4 8 8 C 1.39370 * 120.11800 * 144.69952 * 7 6 5 9 9 C 1.38015 * 119.86721 * 179.78766 * 8 7 6 10 10 C 1.38326 * 120.12746 * 0.46358 * 9 8 7 11 11 C 1.38330 * 120.25114 * 359.79151 * 10 9 8 12 12 C 1.38008 * 120.12022 * 359.97194 * 11 10 9 13 13 C 1.37213 * 126.72206 * 90.00380 * 3 2 1 14 14 C 1.47279 * 128.58143 * 359.95882 * 13 3 2 15 15 O 1.21618 * 120.00151 * 269.70911 * 14 13 3 16 16 N 1.34776 * 120.00320 * 89.70439 * 14 13 3 17 17 C 1.46509 * 119.99370 * 0.02562 * 16 14 13 18 18 C 1.46497 * 120.00710 * 180.02562 * 16 14 13 19 19 H 1.09002 * 109.46725 * 0.02562 * 18 16 14 20 20 C 1.52997 * 109.47188 * 240.00300 * 18 16 14 21 21 C 1.50697 * 109.47081 * 119.99864 * 18 16 14 22 22 H 1.07999 * 120.00055 * 0.02562 * 21 18 16 23 23 C 1.37878 * 119.99687 * 180.02562 * 21 18 16 24 24 N 1.31511 * 120.00458 * 359.97438 * 23 21 18 25 25 Si 1.86805 * 119.99926 * 180.02562 * 23 21 18 26 26 H 1.48503 * 109.46980 * 89.99582 * 25 23 21 27 27 H 1.48493 * 109.47135 * 209.99651 * 25 23 21 28 28 H 1.48498 * 109.47274 * 330.00048 * 25 23 21 29 29 H 1.09007 * 109.47474 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47233 * 299.99895 * 1 2 3 31 31 H 1.09003 * 109.47087 * 60.00006 * 1 2 3 32 32 H 1.08998 * 109.46796 * 239.99341 * 2 1 3 33 33 H 1.09002 * 109.46605 * 119.99784 * 2 1 3 34 34 H 1.07997 * 120.06613 * 359.97438 * 8 7 6 35 35 H 1.08004 * 119.93309 * 180.23224 * 9 8 7 36 36 H 1.08002 * 119.87590 * 179.76270 * 10 9 8 37 37 H 1.07998 * 119.93789 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.06018 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.46975 * 269.99637 * 17 16 14 40 40 H 1.08995 * 109.47277 * 29.99688 * 17 16 14 41 41 H 1.09003 * 109.46743 * 150.00175 * 17 16 14 42 42 H 1.09002 * 109.47153 * 299.99573 * 20 18 16 43 43 H 1.09001 * 109.46832 * 179.97438 * 20 18 16 44 44 H 1.09004 * 109.47261 * 59.99745 * 20 18 16 45 45 H 0.96999 * 120.00480 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2961 2.1741 -1.0700 5 7 2.6942 3.2785 -0.7919 6 6 2.7632 3.4659 0.5015 7 6 3.2045 4.6902 1.2131 8 6 2.5981 5.0588 2.4127 9 6 3.0158 6.1966 3.0727 10 6 4.0275 6.9758 2.5410 11 6 4.6292 6.6177 1.3481 12 6 4.2230 5.4793 0.6819 13 6 2.3058 2.1942 1.0998 14 6 2.1806 1.8422 2.5244 15 8 1.1378 2.0533 3.1136 16 7 3.2215 1.2860 3.1752 17 6 4.4778 1.0320 2.4655 18 6 3.0969 0.9352 4.5921 19 1 2.0987 1.1956 4.9443 20 6 4.1412 1.7060 5.4021 21 6 3.3196 -0.5451 4.7646 22 1 3.5332 -1.1629 3.9049 23 6 3.2508 -1.1109 6.0201 24 7 2.9913 -0.3586 7.0671 25 14 3.5277 -2.9459 6.2342 26 1 4.9712 -3.2046 6.4683 27 1 2.7426 -3.4326 7.3967 28 1 3.0897 -3.6590 5.0075 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.8051 4.4536 2.8264 35 1 2.5492 6.4812 4.0043 36 1 4.3486 7.8675 3.0590 37 1 5.4184 7.2300 0.9373 38 1 4.6938 5.2004 -0.2493 39 1 4.4529 0.0338 2.0285 40 1 4.6045 1.7717 1.6750 41 1 5.3108 1.1016 3.1652 42 1 5.1392 1.4453 5.0498 43 1 4.0481 1.4454 6.4564 44 1 3.9800 2.7769 5.2773 45 1 2.9425 -0.7566 7.9503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340982715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:06 Heat of formation + Delta-G solvation = 30.848780 kcal Electronic energy + Delta-G solvation = -28724.960286 eV Core-core repulsion = 24903.037696 eV Total energy + Delta-G solvation = -3821.922590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.99085 -40.81398 -40.03449 -37.23758 -35.91236 -35.36514 -34.69592 -32.10790 -31.85334 -31.34029 -30.89889 -27.83021 -27.31267 -26.20465 -25.32515 -24.11484 -23.56471 -22.68127 -21.23337 -20.20703 -19.00746 -18.65824 -18.33661 -17.98397 -17.57318 -17.14779 -16.48219 -16.31847 -16.00929 -15.82359 -15.32663 -15.07307 -14.64226 -14.49576 -14.45593 -14.44388 -14.03178 -13.97719 -13.65402 -13.50145 -13.20101 -12.97818 -12.91612 -12.72965 -12.64111 -12.59321 -12.33378 -12.22014 -12.15880 -12.13987 -11.96208 -11.56224 -11.21973 -11.09942 -10.54792 -10.45692 -10.00671 -9.68472 -9.47069 -8.14306 -6.30766 -0.22666 0.22707 0.35058 1.03877 1.38963 1.44361 1.45356 1.54860 1.70254 2.25244 2.45808 2.69504 2.81034 3.14455 3.21616 3.58932 3.79988 3.91139 3.97291 4.06535 4.16174 4.19032 4.23742 4.28949 4.34043 4.47434 4.55418 4.57341 4.70127 4.72982 4.85178 4.87954 4.90784 4.92219 4.99525 5.00746 5.02274 5.25642 5.39185 5.41891 5.44291 5.47290 5.53717 5.63787 5.91792 5.97742 6.12632 6.63474 6.74975 7.02610 7.15722 7.41607 8.90578 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.004715 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.908482 B = 5937.193667 C = 7641.919458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.033 3.967 4 O 0.112 5.888 5 N -0.355 5.355 6 C 0.085 3.915 7 C -0.049 4.049 8 C -0.111 4.111 9 C -0.125 4.125 10 C -0.098 4.098 11 C -0.115 4.115 12 C -0.094 4.094 13 C -0.248 4.248 14 C 0.590 3.410 15 O -0.584 6.584 16 N -0.580 5.580 17 C 0.090 3.910 18 C 0.265 3.735 19 H 0.014 0.986 20 C -0.132 4.132 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.018 3.982 24 N -0.917 5.917 25 Si 0.965 3.035 26 H -0.270 1.270 27 H -0.287 1.287 28 H -0.267 1.267 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.017 0.983 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 7.682 -14.844 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.031 4.031 4 O 0.047 5.953 5 N -0.058 5.058 6 C -0.075 4.075 7 C -0.050 4.050 8 C -0.130 4.130 9 C -0.143 4.143 10 C -0.116 4.116 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.255 4.255 14 C 0.377 3.623 15 O -0.466 6.466 16 N -0.308 5.308 17 C -0.053 4.053 18 C 0.164 3.836 19 H 0.032 0.968 20 C -0.191 4.191 21 C -0.575 4.575 22 H 0.082 0.918 23 C -0.182 4.182 24 N -0.556 5.556 25 Si 0.790 3.210 26 H -0.195 1.195 27 H -0.213 1.213 28 H -0.192 1.192 29 H 0.113 0.887 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.036 0.964 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.987 8.494 -15.415 18.047 hybrid contribution -0.428 -1.201 1.497 1.966 sum 3.559 7.293 -13.918 16.111 Atomic orbital electron populations 1.21773 0.92513 1.04162 1.02020 1.20451 0.97476 0.83977 1.06455 1.24986 0.97359 0.96799 0.83925 1.84451 1.60911 1.17214 1.32686 1.73874 1.17594 0.99016 1.15305 1.23127 1.01118 0.94462 0.88751 1.17781 0.99387 0.92467 0.95361 1.21261 0.99498 0.97830 0.94453 1.21348 0.98310 0.94266 1.00412 1.21699 0.94397 0.99859 0.95684 1.21503 1.00442 0.96120 0.95176 1.21367 0.95140 0.94711 1.00051 1.21903 1.12933 0.95705 0.94989 1.17123 0.83362 0.77379 0.84449 1.90737 1.30122 1.56915 1.68820 1.48133 1.12731 1.57671 1.12312 1.21686 0.85840 1.01021 0.96736 1.18636 0.95325 0.94409 0.75216 0.96799 1.21885 0.98489 0.95796 1.02880 1.21509 1.49518 0.92782 0.93720 0.91785 1.25704 0.94430 1.02644 0.95388 1.70013 1.49030 1.37101 0.99416 0.85456 0.78361 0.79521 0.77705 1.19488 1.21296 1.19152 0.88746 0.94978 0.90671 0.84784 0.89373 0.88489 0.84374 0.82111 0.81803 0.84563 0.91738 0.91675 0.90337 0.93483 0.90934 0.96389 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.89 71.98 0.71 -2.61 16 2 C -0.05 -1.06 6.37 29.85 0.19 -0.86 16 3 C 0.03 0.96 6.79 25.44 0.17 1.13 16 4 O 0.11 3.16 11.05 76.97 0.85 4.01 16 5 N -0.35 -11.07 12.05 -45.00 -0.54 -11.61 16 6 C 0.09 2.88 6.82 44.50 0.30 3.19 16 7 C -0.05 -1.56 5.87 -20.05 -0.12 -1.68 16 8 C -0.11 -3.74 9.32 22.49 0.21 -3.53 16 9 C -0.13 -3.33 10.03 22.24 0.22 -3.11 16 10 C -0.10 -1.97 10.04 22.31 0.22 -1.74 16 11 C -0.11 -2.22 10.03 22.24 0.22 -2.00 16 12 C -0.09 -2.34 9.78 22.49 0.22 -2.12 16 13 C -0.25 -8.97 4.37 -18.61 -0.08 -9.05 16 14 C 0.59 26.07 6.30 86.62 0.55 26.61 16 15 O -0.58 -30.74 15.79 -4.09 -0.06 -30.81 16 16 N -0.58 -25.34 2.75 -830.84 -2.29 -27.63 16 17 C 0.09 3.12 9.50 127.77 1.21 4.33 16 18 C 0.27 13.73 2.64 44.24 0.12 13.85 16 19 H 0.01 0.86 6.90 -2.39 -0.02 0.85 16 20 C -0.13 -6.38 8.95 71.98 0.64 -5.73 16 21 C -0.54 -28.44 8.37 25.60 0.21 -28.23 16 22 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 23 C 0.02 0.97 5.30 84.66 0.45 1.42 16 24 N -0.92 -51.85 11.32 21.45 0.24 -51.60 16 25 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 2.36 8.10 -2.39 -0.02 2.34 16 34 H 0.10 3.93 6.60 -2.91 -0.02 3.91 16 35 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.06 2.04 6.71 -2.39 -0.02 2.03 16 41 H 0.08 2.68 6.43 -2.39 -0.02 2.66 16 42 H 0.05 2.07 6.66 -2.39 -0.02 2.05 16 43 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 44 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -70.02 378.69 6.69 -63.33 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 1.00 Total: 20.55 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.46 Total: -10.14 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -2.59 Total: -90.84 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: 0.79 Total: -26.80 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -70.02 6.69 -63.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340982715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.180 kcal (2) G-P(sol) polarization free energy of solvation -70.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds