Wall clock time and date at job start Tue Mar 31 2020 15:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47196 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47196 * 179.97438 * 114.66629 * 3 2 1 5 5 C 1.53005 * 109.47032 * 114.45026 * 4 3 2 6 6 N 1.46496 * 109.47401 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99973 * 179.97438 * 6 5 4 8 8 O 1.21350 * 120.00592 * 359.73053 * 7 6 5 9 9 C 1.49456 * 119.99966 * 180.02562 * 7 6 5 10 10 O 1.21355 * 119.99792 * 359.72883 * 9 7 6 11 11 N 1.34777 * 119.99994 * 179.73002 * 9 7 6 12 12 C 1.46496 * 119.99614 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47513 * 34.99437 * 12 11 9 14 14 C 1.53005 * 109.46999 * 154.99671 * 12 11 9 15 15 C 1.50695 * 109.46978 * 294.99563 * 14 12 11 16 16 H 1.08001 * 120.00091 * 0.02562 * 15 14 12 17 17 C 1.37875 * 119.99897 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00152 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 120.00214 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46864 * 90.00167 * 19 17 15 21 21 H 1.48503 * 109.47159 * 210.00312 * 19 17 15 22 22 H 1.48498 * 109.46948 * 330.00090 * 19 17 15 23 23 C 1.50698 * 109.47133 * 274.99546 * 12 11 9 24 24 C 1.38236 * 119.99733 * 319.73012 * 23 12 11 25 25 C 1.38236 * 119.99905 * 179.78750 * 24 23 12 26 26 C 1.38235 * 120.00221 * 0.44254 * 25 24 23 27 27 C 1.38245 * 119.99811 * 359.81002 * 26 25 24 28 28 C 1.38231 * 120.00269 * 140.00231 * 23 12 11 29 29 H 1.09004 * 109.47584 * 310.88126 * 1 2 3 30 30 H 1.09007 * 109.47279 * 70.88183 * 1 2 3 31 31 H 1.08997 * 109.47577 * 190.88046 * 1 2 3 32 32 H 1.09002 * 109.47570 * 354.45788 * 4 3 2 33 33 H 1.08993 * 109.47277 * 234.45200 * 4 3 2 34 34 H 1.09007 * 109.46761 * 59.99843 * 5 4 3 35 35 H 1.08997 * 109.46989 * 300.00657 * 5 4 3 36 36 H 0.97004 * 120.00009 * 0.02562 * 6 5 4 37 37 H 0.96996 * 119.99887 * 359.97438 * 11 9 7 38 38 H 1.09001 * 109.47071 * 54.99707 * 14 12 11 39 39 H 1.09000 * 109.46960 * 174.99671 * 14 12 11 40 40 H 0.97001 * 120.00571 * 179.97438 * 18 17 15 41 41 H 1.08004 * 120.00443 * 359.97438 * 24 23 12 42 42 H 1.08002 * 120.00624 * 180.27464 * 25 24 23 43 43 H 1.07994 * 120.00724 * 179.83443 * 26 25 24 44 44 H 1.07994 * 119.99799 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99949 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1179 0.0015 -0.0006 5 6 4.6270 0.5989 -1.3140 6 7 6.0920 0.6004 -1.3144 7 6 6.7650 1.0836 -2.3774 8 8 6.1577 1.5128 -3.3362 9 6 8.2596 1.0846 -2.3781 10 8 8.8670 0.6549 -1.4194 11 7 8.9327 1.5628 -3.4433 12 6 10.3976 1.5632 -3.4442 13 1 10.7616 0.6809 -2.9176 14 6 10.9068 1.5424 -4.8868 15 6 10.5083 0.2450 -5.5415 16 1 9.9475 -0.4910 -4.9845 17 6 10.8586 -0.0021 -6.8519 18 7 11.5410 0.8943 -7.5304 19 14 10.3640 -1.6102 -7.6638 20 1 9.0361 -1.4508 -8.3093 21 1 11.3725 -1.9773 -8.6902 22 1 10.2901 -2.6807 -6.6373 23 6 10.8999 2.8040 -2.7520 24 6 10.2686 4.0158 -2.9614 25 6 10.7266 5.1532 -2.3231 26 6 11.8216 5.0806 -1.4825 27 6 12.4562 3.8696 -1.2771 28 6 11.9954 2.7315 -1.9121 29 1 -0.3634 0.6726 0.7770 30 1 -0.3634 0.3366 -0.9710 31 1 -0.3634 -1.0091 0.1940 32 1 4.4820 -1.0212 0.0985 33 1 4.4812 0.5991 0.8353 34 1 4.2629 1.6215 -1.4132 35 1 4.2636 0.0012 -2.1499 36 1 6.5776 0.2530 -0.5499 37 1 8.4471 1.9059 -4.2097 38 1 10.4716 2.3762 -5.4378 39 1 11.9931 1.6324 -4.8900 40 1 11.7879 0.7204 -8.4522 41 1 9.4156 4.0735 -3.6214 42 1 10.2307 6.0992 -2.4832 43 1 12.1812 5.9696 -0.9858 44 1 13.3119 3.8130 -0.6207 45 1 12.4911 1.7854 -1.7516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343207936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:28 Heat of formation + Delta-G solvation = -32.377207 kcal Electronic energy + Delta-G solvation = -26503.959951 eV Core-core repulsion = 22679.295676 eV Total energy + Delta-G solvation = -3824.664274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.79614 -40.42130 -39.34985 -37.33402 -36.82454 -35.11345 -34.70097 -32.60422 -32.21898 -31.70103 -30.58296 -28.64343 -27.16120 -25.73833 -23.87638 -23.72667 -23.26714 -21.77338 -21.23139 -19.70018 -18.63523 -18.16073 -17.67971 -17.34441 -17.12219 -16.68558 -16.57045 -16.25604 -16.20044 -15.84184 -15.36332 -14.89944 -14.87780 -14.47722 -14.44234 -14.28537 -14.26257 -14.19238 -14.04711 -13.70165 -13.48642 -13.30797 -12.97887 -12.94590 -12.81092 -12.63229 -12.46232 -12.16877 -11.88644 -11.63572 -11.36969 -10.87264 -10.69640 -10.67034 -10.56963 -10.38353 -10.17417 -9.76199 -9.54876 -8.21679 -6.31825 0.34653 0.48450 0.55577 1.25607 1.39011 1.39815 1.50016 1.73400 1.73705 2.15494 2.38938 2.64172 2.97002 3.12754 3.35319 3.51377 3.89242 3.93771 4.01834 4.05122 4.20788 4.32477 4.37625 4.38680 4.61394 4.72879 4.76225 4.77102 4.78008 4.79910 4.87741 4.91393 5.06713 5.07611 5.12602 5.13919 5.20122 5.39670 5.51875 5.60768 5.64281 5.75164 5.76938 5.97516 6.13580 6.18524 6.39832 6.66108 6.73891 6.80283 6.96663 7.36993 8.88970 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008159 B = 0.003226 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.840723 B = 8676.140321 C =11407.609664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.193 4.193 3 C -0.219 4.219 4 C -0.006 4.006 5 C 0.125 3.875 6 N -0.686 5.686 7 C 0.513 3.487 8 O -0.542 6.542 9 C 0.504 3.496 10 O -0.545 6.545 11 N -0.668 5.668 12 C 0.199 3.801 13 H 0.075 0.925 14 C 0.035 3.965 15 C -0.532 4.532 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.955 3.045 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.101 4.101 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.125 4.125 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.423 0.577 37 H 0.412 0.588 38 H 0.009 0.991 39 H 0.014 0.986 40 H 0.264 0.736 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 3.408 17.620 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.193 4.193 3 C -0.219 4.219 4 C -0.043 4.043 5 C 0.003 3.997 6 N -0.340 5.340 7 C 0.293 3.707 8 O -0.419 6.419 9 C 0.284 3.716 10 O -0.424 6.424 11 N -0.318 5.318 12 C 0.094 3.906 13 H 0.093 0.907 14 C -0.002 4.002 15 C -0.570 4.570 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.780 3.220 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.103 4.103 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.144 4.144 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.262 0.738 37 H 0.248 0.752 38 H 0.027 0.973 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.251 3.432 17.436 22.167 hybrid contribution 0.001 -0.902 -1.072 1.401 sum -13.250 2.529 16.364 21.207 Atomic orbital electron populations 1.19111 0.82478 1.04360 1.04252 1.23371 0.95275 1.00832 0.99801 1.22318 0.94001 1.02541 1.03077 1.18733 0.84456 1.04024 0.97084 1.21405 0.77419 1.02201 0.98716 1.45602 1.07812 1.61222 1.19407 1.20043 0.88013 0.79013 0.83594 1.90762 1.70002 1.46456 1.34715 1.20218 0.88565 0.79210 0.83595 1.90696 1.70138 1.47030 1.34499 1.45790 1.07515 1.59835 1.18615 1.19960 0.78021 0.94859 0.97717 0.90670 1.19166 0.95846 0.96426 0.88752 1.21401 1.35274 1.03005 0.97306 0.92772 1.25777 0.94979 1.00006 0.98070 1.70061 1.39467 1.36267 1.10615 0.85596 0.78068 0.79990 0.78302 1.20059 1.20644 1.19306 1.20356 0.97053 0.95286 0.97556 1.21065 1.00354 0.92724 1.00188 1.21411 0.97513 0.98269 0.97152 1.21489 0.95724 0.98540 0.98599 1.21423 1.00521 0.92231 0.99716 1.21188 0.96390 0.99845 0.96940 0.88712 0.89085 0.88784 0.87254 0.86964 0.90944 0.91376 0.73844 0.75151 0.97266 0.96803 0.92688 0.86943 0.83911 0.83019 0.83435 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.45 10.32 70.18 0.72 0.28 16 2 C -0.19 -3.40 14.13 31.12 0.44 -2.96 16 3 C -0.22 -4.07 13.34 31.12 0.42 -3.65 16 4 C -0.01 -0.09 5.82 28.79 0.17 0.08 16 5 C 0.13 2.47 5.63 86.38 0.49 2.95 16 6 N -0.69 -15.89 5.55 -464.41 -2.58 -18.46 16 7 C 0.51 16.34 7.89 87.27 0.69 17.03 16 8 O -0.54 -19.91 16.48 -3.25 -0.05 -19.96 16 9 C 0.50 18.27 7.85 87.27 0.68 18.95 16 10 O -0.55 -20.85 16.14 -3.26 -0.05 -20.90 16 11 N -0.67 -26.14 4.03 -447.42 -1.81 -27.95 16 12 C 0.20 8.37 2.11 44.25 0.09 8.46 16 13 H 0.08 3.37 7.44 -2.39 -0.02 3.35 16 14 C 0.04 1.79 4.49 29.85 0.13 1.92 16 15 C -0.53 -29.21 8.84 25.60 0.23 -28.98 16 16 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 17 C 0.01 0.59 5.46 84.65 0.46 1.05 16 18 N -0.92 -54.57 13.29 21.45 0.28 -54.28 16 19 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.10 -3.80 4.91 -19.87 -0.10 -3.89 16 24 C -0.12 -4.25 9.32 22.27 0.21 -4.05 16 25 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 26 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 27 C -0.12 -3.25 10.05 22.27 0.22 -3.02 16 28 C -0.13 -4.19 9.67 22.27 0.22 -3.97 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.42 8.16 7.94 -92.71 -0.74 7.42 16 37 H 0.41 16.30 8.07 -92.71 -0.75 15.56 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.11 3.82 7.73 -2.91 -0.02 3.80 16 42 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 45 H 0.12 3.91 8.04 -2.91 -0.02 3.89 16 Total: -1.00 -71.13 399.00 2.88 -68.25 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -0.47 Total: 32.97 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.52 Total: -5.92 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -4.10 Total: -100.69 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.11 Total: -40.86 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.13 2.88 -68.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343207936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.877 kcal (2) G-P(sol) polarization free energy of solvation -71.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds