Wall clock time and date at job start Tue Mar 31 2020 16:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46995 * 239.99897 * 2 1 3 5 5 H 1.07996 * 120.00114 * 240.00213 * 4 2 1 6 6 C 1.37881 * 119.99639 * 60.00065 * 4 2 1 7 7 N 1.31513 * 120.00371 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99629 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47260 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46961 * 120.00016 * 8 6 4 11 11 H 1.48500 * 109.47281 * 239.99825 * 8 6 4 12 12 C 1.52998 * 109.46939 * 119.99966 * 2 1 3 13 13 N 1.46502 * 109.47532 * 300.00021 * 12 2 1 14 14 C 1.34775 * 120.00268 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99629 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99956 * 179.97438 * 14 13 12 17 17 N 1.46498 * 109.46797 * 179.97438 * 16 14 13 18 18 C 1.35490 * 119.19307 * 264.99267 * 17 16 14 19 19 C 1.34917 * 122.52090 * 180.02562 * 18 17 16 20 20 C 1.41458 * 120.09716 * 359.96494 * 19 18 17 21 21 O 1.22009 * 121.11215 * 179.97438 * 20 19 18 22 22 C 1.47345 * 117.77768 * 0.02562 * 20 19 18 23 23 C 1.39486 * 121.47791 * 180.02562 * 22 20 19 24 24 C 1.36705 * 119.66342 * 179.97438 * 23 22 20 25 25 C 1.38812 * 120.54693 * 359.97438 * 24 23 22 26 26 C 1.37764 * 120.70075 * 0.02562 * 25 24 23 27 27 C 1.37689 * 119.18739 * 85.00582 * 17 16 14 28 28 H 1.09006 * 109.47576 * 300.00052 * 1 2 3 29 29 H 1.09003 * 109.47425 * 60.00018 * 1 2 3 30 30 H 1.09005 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47003 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47661 * 299.99757 * 3 2 1 33 33 H 1.08997 * 109.47448 * 60.00329 * 3 2 1 34 34 H 0.96994 * 120.00082 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47172 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.46999 * 60.00399 * 12 2 1 37 37 H 0.97000 * 119.99771 * 0.02562 * 13 12 2 38 38 H 1.08997 * 109.46551 * 59.99918 * 16 14 13 39 39 H 1.08997 * 109.47203 * 299.99876 * 16 14 13 40 40 H 1.07994 * 118.73834 * 0.03541 * 18 17 16 41 41 H 1.08001 * 119.94819 * 179.97438 * 19 18 17 42 42 H 1.07997 * 120.17031 * 0.21488 * 23 22 20 43 43 H 1.07999 * 119.72187 * 180.02562 * 24 23 22 44 44 H 1.07992 * 119.65075 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.14530 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 6 2.0399 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4455 14 6 1.8776 -0.4909 3.6696 15 8 2.5749 -1.4769 3.7808 16 6 1.3757 0.2199 4.9000 17 7 1.8640 -0.4709 6.0961 18 6 1.0732 -1.3935 6.6955 19 6 1.4550 -2.0686 7.7994 20 6 2.7239 -1.8263 8.3758 21 8 3.0877 -2.4259 9.3742 22 6 3.5910 -0.8247 7.7309 23 6 4.8572 -0.5255 8.2340 24 6 5.6311 0.4100 7.6057 25 6 5.1673 1.0633 6.4722 26 6 3.9199 0.7825 5.9593 27 6 3.1151 -0.1663 6.5837 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7086 1.1613 -3.4843 35 1 3.1300 -0.7217 1.2491 36 1 1.6766 -1.7489 1.2492 37 1 0.9937 0.7578 2.3565 38 1 0.2858 0.2199 4.9003 39 1 1.7391 1.2475 4.8997 40 1 0.1002 -1.5963 6.2733 41 1 0.7908 -2.7953 8.2436 42 1 5.2258 -1.0332 9.1130 43 1 6.6117 0.6420 7.9941 44 1 5.7909 1.7996 5.9871 45 1 3.5682 1.2959 5.0766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361402297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:06 Heat of formation + Delta-G solvation = -42.571271 kcal Electronic energy + Delta-G solvation = -27591.624525 eV Core-core repulsion = 23766.518203 eV Total energy + Delta-G solvation = -3825.106322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.40112 -40.68203 -39.12278 -38.52063 -37.90480 -35.03481 -33.91275 -32.76762 -31.73995 -31.50581 -29.01644 -27.51487 -27.36071 -26.26639 -25.10249 -24.69691 -22.77019 -21.53408 -20.60512 -19.48503 -19.09896 -18.74189 -18.22711 -17.70010 -16.89625 -16.60166 -16.51535 -16.17770 -15.90623 -15.79268 -15.27727 -15.17573 -15.01221 -14.75273 -14.68396 -14.38376 -14.06347 -13.88059 -13.79912 -13.26846 -13.09587 -13.05943 -12.96724 -12.83565 -12.66103 -12.58494 -12.22444 -12.18266 -12.13892 -11.45390 -11.29287 -10.95415 -10.66886 -10.60524 -10.39283 -10.35738 -10.03398 -9.96633 -8.72067 -8.02984 -6.17751 -0.29858 0.02635 0.72279 1.39758 1.42403 1.45715 1.53497 1.58146 2.10175 2.30195 2.48494 2.97389 3.21247 3.34038 3.50779 3.64867 3.75209 3.88758 4.00103 4.11838 4.25697 4.33124 4.34393 4.45316 4.53569 4.61428 4.75516 4.81162 4.86819 4.98102 5.02978 5.10030 5.12214 5.12917 5.23576 5.37409 5.39807 5.52239 5.58695 5.60842 5.69020 5.71804 5.85961 6.01711 6.21145 6.25422 6.45690 6.62671 6.85354 6.87488 7.27653 7.50429 8.95332 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002607 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.201180 B =10738.067695 C =11158.499923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.040 0.960 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 0.937 3.063 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.151 3.849 13 N -0.701 5.701 14 C 0.484 3.516 15 O -0.582 6.582 16 C 0.076 3.924 17 N -0.477 5.477 18 C 0.207 3.793 19 C -0.352 4.352 20 C 0.399 3.601 21 O -0.562 6.562 22 C -0.228 4.228 23 C -0.054 4.054 24 C -0.157 4.157 25 C -0.054 4.054 26 C -0.175 4.175 27 C 0.191 3.809 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.415 0.585 38 H 0.177 0.823 39 H 0.156 0.844 40 H 0.208 0.792 41 H 0.157 0.843 42 H 0.128 0.872 43 H 0.155 0.845 44 H 0.163 0.837 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 7.224 15.969 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.568 4.568 5 H 0.058 0.942 6 C -0.168 4.168 7 N -0.535 5.535 8 Si 0.765 3.235 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.027 3.973 13 N -0.353 5.353 14 C 0.270 3.730 15 O -0.462 6.462 16 C -0.049 4.049 17 N -0.165 5.165 18 C 0.079 3.921 19 C -0.377 4.377 20 C 0.292 3.708 21 O -0.451 6.451 22 C -0.232 4.232 23 C -0.072 4.072 24 C -0.175 4.175 25 C -0.073 4.073 26 C -0.195 4.195 27 C 0.089 3.911 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.253 0.747 38 H 0.195 0.805 39 H 0.173 0.827 40 H 0.224 0.776 41 H 0.175 0.825 42 H 0.146 0.854 43 H 0.173 0.827 44 H 0.181 0.819 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.731 6.441 16.225 17.472 hybrid contribution 0.318 -0.727 -1.261 1.489 sum -0.412 5.714 14.964 16.023 Atomic orbital electron populations 1.21686 0.96851 0.98690 1.00778 1.18342 0.93393 0.93075 0.90029 1.21678 0.97878 0.97650 1.00759 1.21333 1.31541 1.12063 0.91858 0.94160 1.25363 0.95202 0.95568 1.00708 1.69889 1.36946 1.23166 1.23476 0.85827 0.78151 0.78795 0.80729 1.20286 1.20831 1.20794 1.21208 0.96873 0.94993 0.84269 1.46017 1.52514 1.31994 1.04811 1.21533 0.80648 0.84953 0.85913 1.90781 1.39740 1.28462 1.87198 1.22343 1.05188 0.98162 0.79172 1.42988 1.13068 1.35756 1.24644 1.22224 0.95909 0.83752 0.90231 1.22004 1.00653 1.11296 1.03763 1.19021 0.87774 0.80482 0.83501 1.90644 1.77461 1.50142 1.26857 1.20530 0.99093 1.03919 0.99662 1.20965 0.91794 0.95730 0.98754 1.21188 1.01516 0.97694 0.97110 1.21566 0.94326 0.97339 0.94064 1.21096 0.95890 1.00163 1.02335 1.18036 0.85500 0.94967 0.92618 0.93463 0.92184 0.96483 0.96466 0.92192 0.93487 0.93068 0.94626 0.94589 0.74697 0.80531 0.82651 0.77559 0.82506 0.85430 0.82729 0.81923 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 8.08 71.98 0.58 -4.16 16 2 C 0.05 2.14 0.50 -52.93 -0.03 2.12 16 3 C -0.12 -4.72 8.08 71.98 0.58 -4.14 16 4 C -0.53 -26.38 8.01 25.60 0.21 -26.17 16 5 H 0.04 2.09 7.74 -2.91 -0.02 2.07 16 6 C 0.03 1.58 5.15 84.66 0.44 2.02 16 7 N -0.90 -45.14 9.35 21.45 0.20 -44.94 16 8 Si 0.94 41.04 29.54 68.60 2.03 43.07 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 C 0.15 5.51 4.50 86.38 0.39 5.90 16 13 N -0.70 -17.42 4.96 -463.06 -2.30 -19.72 16 14 C 0.48 11.36 7.70 87.66 0.68 12.03 16 15 O -0.58 -20.40 16.33 -3.03 -0.05 -20.45 16 16 C 0.08 0.87 5.46 85.63 0.47 1.34 16 17 N -0.48 -8.69 2.19 -520.66 -1.14 -9.83 16 18 C 0.21 3.55 10.16 83.36 0.85 4.40 16 19 C -0.35 -8.48 9.96 22.30 0.22 -8.26 16 20 C 0.40 12.74 6.96 25.46 0.18 12.92 16 21 O -0.56 -21.86 17.36 -5.34 -0.09 -21.95 16 22 C -0.23 -6.45 5.89 -20.01 -0.12 -6.57 16 23 C -0.05 -1.36 9.61 22.21 0.21 -1.14 16 24 C -0.16 -2.93 9.97 22.05 0.22 -2.71 16 25 C -0.05 -0.91 10.01 22.29 0.22 -0.69 16 26 C -0.17 -3.31 9.12 22.39 0.20 -3.11 16 27 C 0.19 4.41 6.37 39.03 0.25 4.66 16 28 H 0.05 1.40 6.86 -2.38 -0.02 1.38 16 29 H 0.06 2.69 6.07 -2.39 -0.01 2.68 16 30 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 2.68 6.07 -2.39 -0.01 2.67 16 33 H 0.05 1.39 6.86 -2.39 -0.02 1.37 16 34 H 0.26 12.66 8.31 -92.71 -0.77 11.89 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.41 7.77 6.16 -92.71 -0.57 7.20 16 38 H 0.18 0.35 7.88 -2.39 -0.02 0.33 16 39 H 0.16 0.86 6.45 -2.39 -0.02 0.85 16 40 H 0.21 1.49 7.92 -2.91 -0.02 1.47 16 41 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 42 H 0.13 3.26 7.79 -2.91 -0.02 3.24 16 43 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.15 2.15 6.22 -2.91 -0.02 2.13 16 Total: -1.00 -76.29 367.67 4.64 -71.65 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.45 Total: 13.73 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.55 Total: -11.55 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -3.23 Total: -74.49 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.14 Total: -42.40 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -76.29 4.64 -71.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361402297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.075 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds