Wall clock time and date at job start Tue Mar 31 2020 14:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46869 * 2 1 4 4 N 1.30175 * 126.80377 * 85.02342 * 3 2 1 5 5 O 1.20921 * 111.60977 * 179.97438 * 4 3 2 6 6 C 1.34045 * 111.56292 * 0.02562 * 5 4 3 7 7 C 1.35454 * 106.44548 * 359.74663 * 6 5 4 8 8 C 1.50704 * 128.00352 * 180.23627 * 7 6 5 9 9 N 1.46498 * 109.47192 * 5.01772 * 8 7 6 10 10 C 1.46501 * 119.99488 * 85.05870 * 9 8 7 11 11 C 1.34777 * 120.00242 * 265.05339 * 9 8 7 12 12 O 1.21283 * 119.99957 * 5.47417 * 11 9 8 13 13 C 1.50697 * 119.99778 * 185.47129 * 11 9 8 14 14 H 1.09000 * 109.47644 * 300.00253 * 13 11 9 15 15 C 1.50697 * 109.47149 * 60.00406 * 13 11 9 16 16 H 1.07999 * 120.00191 * 34.94266 * 15 13 11 17 17 C 1.37882 * 120.00026 * 214.94208 * 15 13 11 18 18 N 1.31515 * 119.99880 * 5.00400 * 17 15 13 19 19 Si 1.86797 * 120.00294 * 185.00766 * 17 15 13 20 20 H 1.48501 * 109.47310 * 89.99378 * 19 17 15 21 21 H 1.48489 * 109.47359 * 210.00019 * 19 17 15 22 22 H 1.48505 * 109.46847 * 329.99806 * 19 17 15 23 23 C 1.50705 * 109.46805 * 180.02562 * 13 11 9 24 24 C 1.38235 * 120.00023 * 304.14571 * 23 13 11 25 25 C 1.38240 * 119.99854 * 179.81369 * 24 23 13 26 26 C 1.38234 * 119.99933 * 0.39472 * 25 24 23 27 27 C 1.38238 * 119.99838 * 359.85563 * 26 25 24 28 28 C 1.38228 * 120.00127 * 359.96065 * 27 26 25 29 29 H 1.09001 * 109.46923 * 64.98767 * 1 2 3 30 30 H 1.08998 * 109.46987 * 184.98858 * 1 2 3 31 31 H 1.08997 * 109.46863 * 304.99157 * 1 2 3 32 32 H 1.08998 * 109.46934 * 240.00482 * 2 1 3 33 33 H 1.08998 * 109.47283 * 120.00178 * 2 1 3 34 34 H 1.08002 * 126.77223 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.46808 * 125.02379 * 8 7 6 36 36 H 1.09004 * 109.46722 * 245.02383 * 8 7 6 37 37 H 1.09005 * 109.47405 * 90.00080 * 10 9 8 38 38 H 1.09006 * 109.46642 * 209.99655 * 10 9 8 39 39 H 1.08995 * 109.47564 * 329.99346 * 10 9 8 40 40 H 0.96998 * 119.99981 * 180.02562 * 18 17 15 41 41 H 1.07994 * 120.00013 * 359.97438 * 24 23 13 42 42 H 1.07995 * 119.99790 * 180.23218 * 25 24 23 43 43 H 1.07999 * 120.00231 * 179.83978 * 26 25 24 44 44 H 1.08009 * 119.99472 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99749 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2070 2.1862 1.0384 5 8 2.6223 3.2771 0.7227 6 6 2.7807 3.3788 -0.6045 7 6 2.4123 2.1848 -1.1273 8 6 2.4061 1.7682 -2.5756 9 7 2.9882 2.8354 -3.3932 10 6 4.4405 2.9141 -3.5688 11 6 2.1877 3.7446 -3.9838 12 8 0.9958 3.7400 -3.7593 13 6 2.7735 4.7670 -4.9232 14 1 3.5092 5.3701 -4.3910 15 6 3.4404 4.0646 -6.0777 16 1 3.0227 3.1473 -6.4657 17 6 4.5837 4.5929 -6.6387 18 7 5.1479 5.6544 -6.1052 19 14 5.3313 3.8012 -8.1564 20 1 4.7472 4.4173 -9.3748 21 1 6.8012 4.0116 -8.1514 22 1 5.0397 2.3451 -8.1496 23 6 1.6755 5.6585 -5.4435 24 6 0.5804 5.1061 -6.0810 25 6 -0.4287 5.9236 -6.5548 26 6 -0.3386 7.2941 -6.3984 27 6 0.7590 7.8469 -5.7654 28 6 1.7661 7.0291 -5.2883 29 1 -0.3633 0.4345 -0.9313 30 1 -0.3633 -1.0238 0.0894 31 1 -0.3633 0.5893 0.8419 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.1366 4.2410 -1.1489 35 1 2.9938 0.8579 -2.6942 36 1 1.3808 1.5832 -2.8960 37 1 4.7327 2.3336 -4.4440 38 1 4.7337 3.9546 -3.7086 39 1 4.9358 2.5127 -2.6847 40 1 5.9520 6.0263 -6.5001 41 1 0.5119 4.0356 -6.2066 42 1 -1.2860 5.4917 -7.0495 43 1 -1.1257 7.9330 -6.7708 44 1 0.8295 8.9177 -5.6436 45 1 2.6239 7.4611 -4.7942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361468295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:43 Heat of formation + Delta-G solvation = 44.539103 kcal Electronic energy + Delta-G solvation = -28350.764516 eV Core-core repulsion = 24529.435583 eV Total energy + Delta-G solvation = -3821.328933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.76209 -39.46170 -37.91692 -35.91611 -34.77042 -33.80021 -31.96445 -31.11096 -30.95588 -29.95951 -28.19590 -26.93380 -25.51905 -24.48818 -23.74262 -21.78161 -21.61493 -20.82907 -20.36684 -18.39222 -17.44528 -17.32500 -16.83875 -16.08087 -15.92920 -15.38028 -15.13313 -14.57238 -14.39853 -14.26749 -13.98626 -13.83899 -13.44691 -12.96207 -12.72195 -12.67268 -12.45527 -12.28631 -12.25704 -12.11288 -11.77491 -11.68550 -11.60720 -11.57550 -11.34768 -11.09137 -11.05951 -10.90163 -10.45421 -10.27299 -9.99876 -9.76121 -9.56453 -9.14436 -8.84287 -8.61829 -8.12966 -7.96406 -7.66443 -6.34373 -4.37667 1.67280 2.33614 2.34510 2.36736 3.15715 3.23842 3.24768 3.38181 3.56372 3.68358 4.20429 4.23472 4.62845 4.77318 5.04356 5.09153 5.13473 5.18123 5.32439 5.36353 5.52041 5.69586 5.69934 5.75020 5.77675 5.78655 5.85357 5.89863 5.98688 6.05532 6.11918 6.18806 6.23517 6.30431 6.46510 6.55616 6.62930 6.83383 6.92590 7.12604 7.16101 7.34591 7.41473 7.57817 7.72821 7.88755 7.97260 8.12615 8.39240 8.63770 9.09039 9.25977 10.73802 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.004247 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.206766 B = 6591.358321 C = 7818.944464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C 0.023 3.977 4 N -0.371 5.371 5 O 0.091 5.909 6 C -0.042 4.042 7 C -0.206 4.206 8 C 0.193 3.807 9 N -0.615 5.615 10 C 0.095 3.905 11 C 0.525 3.475 12 O -0.560 6.560 13 C 0.052 3.948 14 H 0.093 0.907 15 C -0.506 4.506 16 H 0.061 0.939 17 C 0.077 3.923 18 N -0.879 5.879 19 Si 0.894 3.106 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.018 4.018 24 C -0.083 4.083 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.133 4.133 28 C -0.116 4.116 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.212 0.788 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.268 0.732 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -5.864 6.720 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.137 4.137 4 N -0.077 5.077 5 O 0.027 5.973 6 C -0.123 4.123 7 C -0.211 4.211 8 C 0.069 3.931 9 N -0.349 5.349 10 C -0.047 4.047 11 C 0.317 3.683 12 O -0.439 6.439 13 C 0.031 3.969 14 H 0.110 0.890 15 C -0.544 4.544 16 H 0.079 0.921 17 C -0.128 4.128 18 N -0.515 5.515 19 Si 0.721 3.279 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.019 4.019 24 C -0.102 4.102 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.151 4.151 28 C -0.135 4.135 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.228 0.772 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.169 -5.879 8.124 10.516 hybrid contribution 0.654 -0.284 -1.897 2.027 sum -2.514 -6.163 6.227 9.114 Atomic orbital electron populations 1.21725 0.94001 1.02029 1.02751 1.19908 0.96449 0.88268 1.03505 1.23384 1.02650 0.99117 0.88533 1.73764 1.16565 0.92984 1.24368 1.84773 1.61612 1.27182 1.23720 1.25686 1.02819 1.00887 0.82879 1.21853 1.06402 0.94491 0.98338 1.19441 1.00681 0.90199 0.82817 1.47710 1.08020 1.29164 1.49974 1.21745 0.78491 1.04751 0.99752 1.21834 0.85982 0.81668 0.78846 1.90599 1.16253 1.73463 1.63541 1.18150 0.92854 0.91648 0.94253 0.88956 1.20608 1.09235 1.09145 1.15389 0.92102 1.24888 0.96164 0.94805 0.96905 1.69848 1.20274 1.21852 1.39569 0.86541 0.78199 0.79811 0.83302 1.20370 1.20997 1.19673 1.20058 0.93716 0.93557 0.94555 1.20812 0.93425 0.99120 0.96806 1.20948 0.98950 0.93789 1.01646 1.20806 0.98484 0.94958 1.02418 1.20917 0.95069 0.98670 1.00466 1.20988 0.98081 0.93516 1.00874 0.91984 0.91816 0.92529 0.89646 0.90331 0.77193 0.89885 0.88714 0.92057 0.89247 0.93666 0.92247 0.87254 0.87657 0.87745 0.87554 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.90 37.16 0.37 -1.12 16 2 C -0.04 -0.46 6.45 -27.88 -0.18 -0.64 16 3 C 0.02 0.32 6.58 -82.10 -0.54 -0.22 16 4 N -0.37 -5.75 12.07 33.42 0.40 -5.35 16 5 O 0.09 1.39 11.20 17.16 0.19 1.58 16 6 C -0.04 -0.61 11.66 29.74 0.35 -0.27 16 7 C -0.21 -3.01 6.26 -104.42 -0.65 -3.67 16 8 C 0.19 2.84 5.89 -5.19 -0.03 2.81 16 9 N -0.62 -10.55 2.29 -182.95 -0.42 -10.97 16 10 C 0.10 1.52 9.20 59.85 0.55 2.07 16 11 C 0.53 10.83 6.83 -10.99 -0.08 10.76 16 12 O -0.56 -12.78 14.34 5.55 0.08 -12.70 16 13 C 0.05 1.15 1.66 -94.08 -0.16 0.99 16 14 H 0.09 2.14 6.08 -51.93 -0.32 1.82 16 15 C -0.51 -11.80 6.18 -34.44 -0.21 -12.02 16 16 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 17 C 0.08 1.82 5.45 -17.82 -0.10 1.72 16 18 N -0.88 -21.41 12.77 55.43 0.71 -20.71 16 19 Si 0.89 19.04 29.54 -169.99 -5.02 14.02 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C -0.02 -0.40 4.45 -104.62 -0.47 -0.86 16 24 C -0.08 -1.81 8.02 -39.58 -0.32 -2.13 16 25 C -0.14 -2.61 10.05 -39.58 -0.40 -3.00 16 26 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 27 C -0.13 -2.51 10.05 -39.59 -0.40 -2.91 16 28 C -0.12 -2.46 9.67 -39.59 -0.38 -2.84 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.21 2.90 7.96 -52.49 -0.42 2.49 16 35 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.09 1.51 7.36 -51.93 -0.38 1.13 16 37 H 0.06 1.02 7.82 -51.93 -0.41 0.62 16 38 H 0.09 1.61 6.37 -51.93 -0.33 1.28 16 39 H 0.04 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 41 H 0.11 2.42 7.70 -52.49 -0.40 2.02 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.11 2.36 7.95 -52.48 -0.42 1.94 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -27.56 380.23 -7.81 -35.37 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.44 Total: 7.43 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -3.04 Total: -14.41 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.69 Total: -37.02 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.27 Total: -11.12 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.56 -7.81 -35.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.904 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds