Wall clock time and date at job start Tue Mar 31 2020 14:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46869 * 2 1 4 4 N 1.30175 * 126.80377 * 85.02342 * 3 2 1 5 5 O 1.20921 * 111.60977 * 179.97438 * 4 3 2 6 6 C 1.34045 * 111.56292 * 0.02562 * 5 4 3 7 7 C 1.35454 * 106.44548 * 359.74663 * 6 5 4 8 8 C 1.50704 * 128.00352 * 180.23627 * 7 6 5 9 9 N 1.46498 * 109.47192 * 5.01772 * 8 7 6 10 10 C 1.46501 * 119.99488 * 85.05870 * 9 8 7 11 11 C 1.34777 * 120.00242 * 265.05339 * 9 8 7 12 12 O 1.21283 * 119.99957 * 5.47417 * 11 9 8 13 13 C 1.50697 * 119.99778 * 185.47129 * 11 9 8 14 14 H 1.09000 * 109.47644 * 300.00253 * 13 11 9 15 15 C 1.50697 * 109.47149 * 60.00406 * 13 11 9 16 16 H 1.07999 * 120.00191 * 34.94266 * 15 13 11 17 17 C 1.37882 * 120.00026 * 214.94208 * 15 13 11 18 18 N 1.31515 * 119.99880 * 5.00400 * 17 15 13 19 19 Si 1.86797 * 120.00294 * 185.00766 * 17 15 13 20 20 H 1.48501 * 109.47310 * 89.99378 * 19 17 15 21 21 H 1.48489 * 109.47359 * 210.00019 * 19 17 15 22 22 H 1.48505 * 109.46847 * 329.99806 * 19 17 15 23 23 C 1.50705 * 109.46805 * 180.02562 * 13 11 9 24 24 C 1.38235 * 120.00023 * 304.14571 * 23 13 11 25 25 C 1.38240 * 119.99854 * 179.81369 * 24 23 13 26 26 C 1.38234 * 119.99933 * 0.39472 * 25 24 23 27 27 C 1.38238 * 119.99838 * 359.85563 * 26 25 24 28 28 C 1.38228 * 120.00127 * 359.96065 * 27 26 25 29 29 H 1.09001 * 109.46923 * 64.98767 * 1 2 3 30 30 H 1.08998 * 109.46987 * 184.98858 * 1 2 3 31 31 H 1.08997 * 109.46863 * 304.99157 * 1 2 3 32 32 H 1.08998 * 109.46934 * 240.00482 * 2 1 3 33 33 H 1.08998 * 109.47283 * 120.00178 * 2 1 3 34 34 H 1.08002 * 126.77223 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.46808 * 125.02379 * 8 7 6 36 36 H 1.09004 * 109.46722 * 245.02383 * 8 7 6 37 37 H 1.09005 * 109.47405 * 90.00080 * 10 9 8 38 38 H 1.09006 * 109.46642 * 209.99655 * 10 9 8 39 39 H 1.08995 * 109.47564 * 329.99346 * 10 9 8 40 40 H 0.96998 * 119.99981 * 180.02562 * 18 17 15 41 41 H 1.07994 * 120.00013 * 359.97438 * 24 23 13 42 42 H 1.07995 * 119.99790 * 180.23218 * 25 24 23 43 43 H 1.07999 * 120.00231 * 179.83978 * 26 25 24 44 44 H 1.08009 * 119.99472 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99749 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2070 2.1862 1.0384 5 8 2.6223 3.2771 0.7227 6 6 2.7807 3.3788 -0.6045 7 6 2.4123 2.1848 -1.1273 8 6 2.4061 1.7682 -2.5756 9 7 2.9882 2.8354 -3.3932 10 6 4.4405 2.9141 -3.5688 11 6 2.1877 3.7446 -3.9838 12 8 0.9958 3.7400 -3.7593 13 6 2.7735 4.7670 -4.9232 14 1 3.5092 5.3701 -4.3910 15 6 3.4404 4.0646 -6.0777 16 1 3.0227 3.1473 -6.4657 17 6 4.5837 4.5929 -6.6387 18 7 5.1479 5.6544 -6.1052 19 14 5.3313 3.8012 -8.1564 20 1 4.7472 4.4173 -9.3748 21 1 6.8012 4.0116 -8.1514 22 1 5.0397 2.3451 -8.1496 23 6 1.6755 5.6585 -5.4435 24 6 0.5804 5.1061 -6.0810 25 6 -0.4287 5.9236 -6.5548 26 6 -0.3386 7.2941 -6.3984 27 6 0.7590 7.8469 -5.7654 28 6 1.7661 7.0291 -5.2883 29 1 -0.3633 0.4345 -0.9313 30 1 -0.3633 -1.0238 0.0894 31 1 -0.3633 0.5893 0.8419 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.1366 4.2410 -1.1489 35 1 2.9938 0.8579 -2.6942 36 1 1.3808 1.5832 -2.8960 37 1 4.7327 2.3336 -4.4440 38 1 4.7337 3.9546 -3.7086 39 1 4.9358 2.5127 -2.6847 40 1 5.9520 6.0263 -6.5001 41 1 0.5119 4.0356 -6.2066 42 1 -1.2860 5.4917 -7.0495 43 1 -1.1257 7.9330 -6.7708 44 1 0.8295 8.9177 -5.6436 45 1 2.6239 7.4611 -4.7942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361468295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:42 Heat of formation + Delta-G solvation = 32.710276 kcal Electronic energy + Delta-G solvation = -28351.277452 eV Core-core repulsion = 24529.435583 eV Total energy + Delta-G solvation = -3821.841869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.91097 -41.04182 -39.43709 -37.15566 -36.09184 -35.47277 -33.22333 -32.71704 -32.00946 -31.51236 -29.63049 -28.40490 -27.01083 -25.42209 -25.40963 -23.24159 -23.03810 -22.00479 -21.69984 -19.92075 -18.65521 -18.61467 -18.42877 -17.70349 -17.42419 -16.84912 -16.33868 -16.21843 -15.75957 -15.59801 -15.30656 -15.11045 -14.58334 -14.47193 -14.12033 -13.96616 -13.78946 -13.77061 -13.49921 -13.43501 -13.36700 -13.24599 -12.90224 -12.77871 -12.70591 -12.59633 -12.46395 -12.14837 -11.88818 -11.83858 -11.60146 -11.29681 -10.86606 -10.65289 -10.32586 -10.31931 -9.58701 -9.52427 -9.25924 -8.16387 -6.23720 0.50289 0.77105 0.81201 1.21894 1.44022 1.49160 1.54796 1.91492 2.18300 2.33813 2.46331 3.11369 3.19072 3.29422 3.59935 3.99714 4.07253 4.15079 4.26099 4.31063 4.32847 4.35259 4.43072 4.46377 4.51016 4.54661 4.62036 4.70126 4.79537 4.88003 4.94976 4.96737 5.00077 5.07941 5.11836 5.16306 5.28670 5.31065 5.38396 5.47565 5.70073 5.76783 5.80453 5.87181 6.01549 6.22677 6.40227 6.57237 6.79102 7.24175 7.40352 7.49600 8.91110 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.004247 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.206766 B = 6591.358321 C = 7818.944464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.030 3.970 4 N -0.391 5.391 5 O 0.081 5.919 6 C -0.046 4.046 7 C -0.213 4.213 8 C 0.196 3.804 9 N -0.608 5.608 10 C 0.102 3.898 11 C 0.525 3.475 12 O -0.586 6.586 13 C 0.056 3.944 14 H 0.075 0.925 15 C -0.504 4.504 16 H 0.048 0.952 17 C 0.046 3.954 18 N -0.899 5.899 19 Si 0.941 3.059 20 H -0.288 1.288 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.045 4.045 24 C -0.106 4.106 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.132 4.132 28 C -0.138 4.138 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.214 0.786 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.267 0.733 41 H 0.094 0.906 42 H 0.133 0.867 43 H 0.144 0.856 44 H 0.137 0.863 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 -6.690 6.414 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.130 4.130 4 N -0.099 5.099 5 O 0.019 5.981 6 C -0.127 4.127 7 C -0.218 4.218 8 C 0.072 3.928 9 N -0.340 5.340 10 C -0.041 4.041 11 C 0.316 3.684 12 O -0.467 6.467 13 C 0.035 3.965 14 H 0.093 0.907 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.156 4.156 18 N -0.536 5.536 19 Si 0.768 3.232 20 H -0.214 1.214 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.046 4.046 24 C -0.124 4.124 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.150 4.150 28 C -0.156 4.156 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.230 0.770 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.155 0.845 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.702 -6.712 7.834 10.960 hybrid contribution 0.769 -0.009 -1.782 1.941 sum -2.933 -6.721 6.051 9.507 Atomic orbital electron populations 1.21704 0.93674 1.03331 1.01461 1.20126 0.96615 0.86353 1.05203 1.23897 1.01218 1.00276 0.87615 1.73761 1.17677 0.93296 1.25169 1.84758 1.62064 1.27430 1.23798 1.25829 1.02791 1.01155 0.82969 1.21891 1.06841 0.94696 0.98407 1.19586 1.00551 0.90339 0.82279 1.47656 1.08245 1.28812 1.49250 1.21700 0.77843 1.03455 1.01085 1.21557 0.85775 0.82080 0.78966 1.90571 1.17237 1.74320 1.64581 1.18010 0.92584 0.91841 0.94045 0.90746 1.20581 1.09225 1.08662 1.15702 0.93411 1.25350 0.96499 0.95187 0.98571 1.69930 1.20556 1.22741 1.40408 0.85812 0.77683 0.79284 0.80457 1.21433 1.20466 1.19128 1.20204 0.94386 0.94310 0.95670 1.20825 0.94521 0.98789 0.98311 1.21307 0.98916 0.94400 1.00894 1.21254 0.98956 0.94913 1.01073 1.21301 0.94335 1.00094 0.99250 1.21111 0.99020 0.93494 1.02013 0.93197 0.89193 0.93910 0.87533 0.89026 0.76989 0.86572 0.89813 0.92615 0.91516 0.90333 0.92348 0.88799 0.84933 0.83809 0.84477 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.90 71.98 0.71 -1.95 16 2 C -0.05 -0.85 6.45 29.85 0.19 -0.66 16 3 C 0.03 0.80 6.58 43.58 0.29 1.09 16 4 N -0.39 -11.89 12.07 -49.55 -0.60 -12.49 16 5 O 0.08 2.47 11.20 71.59 0.80 3.27 16 6 C -0.05 -1.36 11.66 67.18 0.78 -0.58 16 7 C -0.21 -6.06 6.26 -19.73 -0.12 -6.18 16 8 C 0.20 5.54 5.89 85.63 0.50 6.04 16 9 N -0.61 -20.81 2.29 -851.12 -1.95 -22.76 16 10 C 0.10 3.21 9.20 127.77 1.18 4.39 16 11 C 0.52 22.23 6.83 87.66 0.60 22.83 16 12 O -0.59 -27.45 14.34 -3.04 -0.04 -27.49 16 13 C 0.06 2.57 1.66 -13.03 -0.02 2.55 16 14 H 0.07 3.63 6.08 -2.39 -0.01 3.61 16 15 C -0.50 -24.04 6.18 25.60 0.16 -23.89 16 16 H 0.05 2.36 7.82 -2.91 -0.02 2.34 16 17 C 0.05 2.22 5.45 84.66 0.46 2.68 16 18 N -0.90 -44.60 12.77 21.45 0.27 -44.32 16 19 Si 0.94 39.10 29.54 68.60 2.03 41.13 16 20 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 C -0.04 -2.05 4.45 -19.86 -0.09 -2.14 16 24 C -0.11 -4.68 8.02 22.27 0.18 -4.50 16 25 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 26 C -0.14 -4.86 10.05 22.27 0.22 -4.64 16 27 C -0.13 -4.76 10.05 22.27 0.22 -4.53 16 28 C -0.14 -5.90 9.67 22.27 0.22 -5.69 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.21 6.02 7.96 -2.91 -0.02 6.00 16 35 H 0.12 2.52 8.11 -2.39 -0.02 2.51 16 36 H 0.08 2.61 7.36 -2.38 -0.02 2.60 16 37 H 0.06 1.83 7.82 -2.38 -0.02 1.81 16 38 H 0.07 2.45 6.37 -2.38 -0.02 2.44 16 39 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 40 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 41 H 0.09 4.31 7.70 -2.91 -0.02 4.28 16 42 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 44 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 45 H 0.11 4.61 7.95 -2.91 -0.02 4.59 16 Total: -1.00 -60.28 380.23 7.20 -53.08 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.99 Total: 29.64 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 5.70 Total: -20.05 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -2.27 Total: -79.57 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.76 Total: -24.22 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -60.28 7.20 -53.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.790 kcal (2) G-P(sol) polarization free energy of solvation -60.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds