Wall clock time and date at job start Tue Mar 31 2020 14:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.46808 * 2 1 4 4 N 1.30178 * 126.80255 * 84.93008 * 3 2 1 5 5 O 1.20927 * 111.60243 * 180.02562 * 4 3 2 6 6 C 1.34041 * 111.56815 * 0.02562 * 5 4 3 7 7 C 1.35449 * 106.44576 * 0.24471 * 6 5 4 8 8 C 1.50705 * 128.00640 * 179.73955 * 7 6 5 9 9 N 1.46499 * 109.46755 * 5.34848 * 8 7 6 10 10 C 1.46498 * 120.00097 * 265.61481 * 9 8 7 11 11 C 1.34781 * 119.99850 * 85.61919 * 9 8 7 12 12 O 1.21280 * 119.99823 * 5.16583 * 11 9 8 13 13 C 1.50700 * 119.99844 * 185.16289 * 11 9 8 14 14 H 1.08994 * 109.47171 * 31.64408 * 13 11 9 15 15 C 1.50699 * 109.47219 * 271.64443 * 13 11 9 16 16 H 1.08009 * 119.99877 * 335.01368 * 15 13 11 17 17 C 1.37873 * 120.00275 * 155.00951 * 15 13 11 18 18 N 1.31515 * 120.00502 * 185.30568 * 17 15 13 19 19 Si 1.86800 * 119.99812 * 5.30731 * 17 15 13 20 20 H 1.48504 * 109.47224 * 93.19500 * 19 17 15 21 21 H 1.48498 * 109.47098 * 213.19549 * 19 17 15 22 22 H 1.48498 * 109.47009 * 333.19299 * 19 17 15 23 23 C 1.50699 * 109.46911 * 151.64727 * 13 11 9 24 24 C 1.38228 * 120.00172 * 67.16972 * 23 13 11 25 25 C 1.38236 * 119.99921 * 179.78756 * 24 23 13 26 26 C 1.38239 * 120.00020 * 0.44162 * 25 24 23 27 27 C 1.38238 * 119.99864 * 359.81027 * 26 25 24 28 28 C 1.38234 * 119.99740 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46858 * 184.90372 * 1 2 3 30 30 H 1.09001 * 109.47013 * 304.90156 * 1 2 3 31 31 H 1.08990 * 109.47108 * 64.90489 * 1 2 3 32 32 H 1.08995 * 109.47302 * 240.00217 * 2 1 3 33 33 H 1.08997 * 109.47021 * 119.99709 * 2 1 3 34 34 H 1.07995 * 126.77534 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47397 * 125.35006 * 8 7 6 36 36 H 1.08999 * 109.46906 * 245.34844 * 8 7 6 37 37 H 1.08996 * 109.47170 * 86.24117 * 10 9 8 38 38 H 1.08999 * 109.46927 * 206.23973 * 10 9 8 39 39 H 1.08994 * 109.47176 * 326.23850 * 10 9 8 40 40 H 0.97001 * 120.00237 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.00068 * 359.97438 * 24 23 13 42 42 H 1.08002 * 120.00034 * 180.27255 * 25 24 23 43 43 H 1.08001 * 119.99993 * 179.83472 * 26 25 24 44 44 H 1.07992 * 119.99816 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.99297 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2054 2.1868 1.0383 5 8 2.6203 3.2779 0.7224 6 6 2.7799 3.3791 -0.6046 7 6 2.4023 2.1884 -1.1282 8 6 2.3837 1.7761 -2.5777 9 7 2.9718 2.8398 -3.3954 10 6 2.1090 3.8460 -4.0195 11 6 4.3067 2.8927 -3.5737 12 8 5.0124 2.0086 -3.1364 13 6 4.9224 4.0504 -4.3165 14 1 4.3279 4.9481 -4.1473 15 6 4.9557 3.7406 -5.7910 16 1 4.9643 2.7141 -6.1270 17 6 4.9751 4.7673 -6.7109 18 7 4.8988 4.5001 -7.9964 19 14 5.1098 6.5380 -6.1315 20 1 6.5373 6.9470 -6.1173 21 1 4.3514 7.4200 -7.0547 22 1 4.5477 6.6548 -4.7620 23 6 6.3268 4.2766 -3.8190 24 6 7.3061 3.3312 -4.0597 25 6 8.5953 3.5408 -3.6071 26 6 8.9031 4.6917 -2.9058 27 6 7.9225 5.6347 -2.6606 28 6 6.6344 5.4271 -3.1171 29 1 -0.3633 -1.0239 0.0878 30 1 -0.3633 0.5880 0.8428 31 1 -0.3633 0.4358 -0.9306 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.1349 4.2415 -1.1492 35 1 2.9614 0.8603 -2.7024 36 1 1.3548 1.6023 -2.8928 37 1 1.9286 4.6575 -3.3146 38 1 2.5970 4.2406 -4.9107 39 1 1.1597 3.3884 -4.2975 40 1 4.9120 5.2225 -8.6436 41 1 7.0646 2.4302 -4.6040 42 1 9.3614 2.8042 -3.7990 43 1 9.9097 4.8542 -2.5499 44 1 8.1631 6.5340 -2.1131 45 1 5.8682 6.1638 -2.9251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361468298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:46 Heat of formation + Delta-G solvation = 50.024588 kcal Electronic energy + Delta-G solvation = -28532.030142 eV Core-core repulsion = 24710.939078 eV Total energy + Delta-G solvation = -3821.091064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.82962 -39.66413 -38.14521 -36.00740 -34.90812 -33.77721 -32.14712 -31.50115 -31.03573 -30.16547 -28.41203 -27.28057 -25.76876 -24.55529 -23.51786 -21.93917 -21.82801 -20.92751 -20.51427 -18.47318 -17.58098 -17.39909 -17.11330 -16.38299 -16.11021 -15.50277 -15.27191 -14.76228 -14.41486 -14.38400 -14.14049 -13.82774 -13.58674 -13.12554 -12.82315 -12.74935 -12.67542 -12.52115 -12.46598 -12.39738 -12.21373 -11.91421 -11.74632 -11.67667 -11.51201 -11.16817 -11.01425 -10.97394 -10.52315 -10.26726 -9.91738 -9.81884 -9.63513 -9.23979 -9.00197 -8.75275 -8.36255 -8.16911 -7.85903 -6.33957 -4.38077 1.59839 2.08374 2.17245 2.27212 3.11465 3.19529 3.26193 3.26773 3.41232 3.51179 4.15069 4.18524 4.54731 4.58515 4.96330 4.99703 5.05550 5.13322 5.20357 5.28302 5.33770 5.51279 5.55708 5.57511 5.65923 5.66854 5.70030 5.76983 5.83551 5.89936 5.92956 5.93476 5.98520 6.15081 6.21639 6.24804 6.31380 6.42179 6.69056 6.82791 6.95234 7.12398 7.23966 7.24395 7.56251 7.74225 7.87351 8.20690 8.32794 8.67449 8.90028 9.22992 10.76717 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.004378 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.685535 B = 6394.229594 C = 7356.610640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.026 3.974 4 N -0.369 5.369 5 O 0.092 5.908 6 C -0.045 4.045 7 C -0.205 4.205 8 C 0.194 3.806 9 N -0.623 5.623 10 C 0.075 3.925 11 C 0.542 3.458 12 O -0.544 6.544 13 C 0.026 3.974 14 H 0.066 0.934 15 C -0.507 4.507 16 H 0.082 0.918 17 C 0.087 3.913 18 N -0.881 5.881 19 Si 0.863 3.137 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.258 1.258 23 C -0.044 4.044 24 C -0.063 4.063 25 C -0.133 4.133 26 C -0.140 4.140 27 C -0.132 4.132 28 C -0.140 4.140 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.209 0.791 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.269 0.731 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.402 -1.670 11.132 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.134 4.134 4 N -0.075 5.075 5 O 0.028 5.972 6 C -0.127 4.127 7 C -0.210 4.210 8 C 0.070 3.930 9 N -0.357 5.357 10 C -0.068 4.068 11 C 0.333 3.667 12 O -0.421 6.421 13 C 0.005 3.995 14 H 0.084 0.916 15 C -0.544 4.544 16 H 0.100 0.900 17 C -0.118 4.118 18 N -0.517 5.517 19 Si 0.689 3.311 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.182 1.182 23 C -0.045 4.045 24 C -0.081 4.081 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.150 4.150 28 C -0.158 4.158 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.226 0.774 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.198 -2.208 12.454 14.085 hybrid contribution 0.256 1.154 -0.832 1.445 sum -5.942 -1.054 11.622 13.095 Atomic orbital electron populations 1.21715 0.94030 1.02153 1.02387 1.19934 0.96264 0.88301 1.03890 1.23373 1.02616 0.99030 0.88377 1.73776 1.16517 0.92946 1.24254 1.84776 1.61574 1.27239 1.23594 1.25631 1.02742 1.01233 0.83050 1.21830 1.06464 0.94300 0.98400 1.19462 0.99050 0.91766 0.82719 1.47780 1.07074 1.29689 1.51159 1.21935 0.94787 0.90909 0.99157 1.21154 0.80599 0.88014 0.76964 1.90595 1.60835 1.40087 1.50552 1.18580 0.90050 0.93845 0.97075 0.91593 1.20430 1.53028 0.95760 0.85207 0.90036 1.24907 0.93498 0.98728 0.94632 1.69863 1.47919 1.33111 1.00778 0.87071 0.79656 0.85225 0.79123 1.19412 1.21130 1.18230 1.20211 0.97269 0.93393 0.93647 1.20971 0.91588 0.98861 0.96723 1.21098 0.96816 0.97505 0.99646 1.20904 0.98523 0.95252 1.01147 1.20889 0.93594 0.99020 1.01493 1.21045 0.96590 0.98209 0.99943 0.91734 0.92543 0.92250 0.89449 0.90198 0.77394 0.88760 0.89331 0.93811 0.88114 0.91803 0.92081 0.85824 0.87046 0.87298 0.87234 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.90 37.16 0.37 -0.88 16 2 C -0.05 -0.48 6.45 -27.88 -0.18 -0.66 16 3 C 0.03 0.35 6.58 -82.10 -0.54 -0.19 16 4 N -0.37 -5.61 12.07 33.43 0.40 -5.21 16 5 O 0.09 1.37 11.20 17.17 0.19 1.56 16 6 C -0.05 -0.64 11.64 29.74 0.35 -0.29 16 7 C -0.20 -2.89 6.23 -104.42 -0.65 -3.54 16 8 C 0.19 2.71 5.92 -5.19 -0.03 2.67 16 9 N -0.62 -10.16 2.31 -182.96 -0.42 -10.58 16 10 C 0.08 1.06 9.90 59.85 0.59 1.65 16 11 C 0.54 10.98 6.65 -10.98 -0.07 10.90 16 12 O -0.54 -12.40 14.79 5.56 0.08 -12.32 16 13 C 0.03 0.56 1.04 -94.08 -0.10 0.46 16 14 H 0.07 1.34 4.16 -51.93 -0.22 1.12 16 15 C -0.51 -12.66 7.33 -34.44 -0.25 -12.91 16 16 H 0.08 2.30 8.05 -52.48 -0.42 1.88 16 17 C 0.09 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.88 -24.41 13.96 55.43 0.77 -23.63 16 19 Si 0.86 19.31 26.11 -169.99 -4.44 14.87 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.26 -5.18 5.61 56.52 0.32 -4.87 16 23 C -0.04 -0.95 3.84 -104.63 -0.40 -1.35 16 24 C -0.06 -1.37 8.05 -39.59 -0.32 -1.69 16 25 C -0.13 -2.49 10.05 -39.58 -0.40 -2.88 16 26 C -0.14 -2.42 10.05 -39.58 -0.40 -2.82 16 27 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 28 C -0.14 -2.71 8.60 -39.58 -0.34 -3.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.21 2.65 7.96 -52.49 -0.42 2.24 16 35 H 0.09 1.43 7.49 -51.93 -0.39 1.04 16 36 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 1.69 5.90 -51.93 -0.31 1.39 16 39 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.12 2.83 7.61 -52.49 -0.40 2.43 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.11 1.94 7.64 -52.49 -0.40 1.54 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -30.48 373.87 -7.04 -37.52 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.39 Total: 7.27 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.87 Total: -15.13 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.75 Total: -39.42 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.27 Total: -10.75 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.44 Total: 14.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.48 -7.04 -37.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.546 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds