Wall clock time and date at job start Tue Mar 31 2020 14:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.46808 * 2 1 4 4 N 1.30178 * 126.80255 * 84.93008 * 3 2 1 5 5 O 1.20927 * 111.60243 * 180.02562 * 4 3 2 6 6 C 1.34041 * 111.56815 * 0.02562 * 5 4 3 7 7 C 1.35449 * 106.44576 * 0.24471 * 6 5 4 8 8 C 1.50705 * 128.00640 * 179.73955 * 7 6 5 9 9 N 1.46499 * 109.46755 * 5.34848 * 8 7 6 10 10 C 1.46498 * 120.00097 * 265.61481 * 9 8 7 11 11 C 1.34781 * 119.99850 * 85.61919 * 9 8 7 12 12 O 1.21280 * 119.99823 * 5.16583 * 11 9 8 13 13 C 1.50700 * 119.99844 * 185.16289 * 11 9 8 14 14 H 1.08994 * 109.47171 * 31.64408 * 13 11 9 15 15 C 1.50699 * 109.47219 * 271.64443 * 13 11 9 16 16 H 1.08009 * 119.99877 * 335.01368 * 15 13 11 17 17 C 1.37873 * 120.00275 * 155.00951 * 15 13 11 18 18 N 1.31515 * 120.00502 * 185.30568 * 17 15 13 19 19 Si 1.86800 * 119.99812 * 5.30731 * 17 15 13 20 20 H 1.48504 * 109.47224 * 93.19500 * 19 17 15 21 21 H 1.48498 * 109.47098 * 213.19549 * 19 17 15 22 22 H 1.48498 * 109.47009 * 333.19299 * 19 17 15 23 23 C 1.50699 * 109.46911 * 151.64727 * 13 11 9 24 24 C 1.38228 * 120.00172 * 67.16972 * 23 13 11 25 25 C 1.38236 * 119.99921 * 179.78756 * 24 23 13 26 26 C 1.38239 * 120.00020 * 0.44162 * 25 24 23 27 27 C 1.38238 * 119.99864 * 359.81027 * 26 25 24 28 28 C 1.38234 * 119.99740 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46858 * 184.90372 * 1 2 3 30 30 H 1.09001 * 109.47013 * 304.90156 * 1 2 3 31 31 H 1.08990 * 109.47108 * 64.90489 * 1 2 3 32 32 H 1.08995 * 109.47302 * 240.00217 * 2 1 3 33 33 H 1.08997 * 109.47021 * 119.99709 * 2 1 3 34 34 H 1.07995 * 126.77534 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47397 * 125.35006 * 8 7 6 36 36 H 1.08999 * 109.46906 * 245.34844 * 8 7 6 37 37 H 1.08996 * 109.47170 * 86.24117 * 10 9 8 38 38 H 1.08999 * 109.46927 * 206.23973 * 10 9 8 39 39 H 1.08994 * 109.47176 * 326.23850 * 10 9 8 40 40 H 0.97001 * 120.00237 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.00068 * 359.97438 * 24 23 13 42 42 H 1.08002 * 120.00034 * 180.27255 * 25 24 23 43 43 H 1.08001 * 119.99993 * 179.83472 * 26 25 24 44 44 H 1.07992 * 119.99816 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.99297 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2054 2.1868 1.0383 5 8 2.6203 3.2779 0.7224 6 6 2.7799 3.3791 -0.6046 7 6 2.4023 2.1884 -1.1282 8 6 2.3837 1.7761 -2.5777 9 7 2.9718 2.8398 -3.3954 10 6 2.1090 3.8460 -4.0195 11 6 4.3067 2.8927 -3.5737 12 8 5.0124 2.0086 -3.1364 13 6 4.9224 4.0504 -4.3165 14 1 4.3279 4.9481 -4.1473 15 6 4.9557 3.7406 -5.7910 16 1 4.9643 2.7141 -6.1270 17 6 4.9751 4.7673 -6.7109 18 7 4.8988 4.5001 -7.9964 19 14 5.1098 6.5380 -6.1315 20 1 6.5373 6.9470 -6.1173 21 1 4.3514 7.4200 -7.0547 22 1 4.5477 6.6548 -4.7620 23 6 6.3268 4.2766 -3.8190 24 6 7.3061 3.3312 -4.0597 25 6 8.5953 3.5408 -3.6071 26 6 8.9031 4.6917 -2.9058 27 6 7.9225 5.6347 -2.6606 28 6 6.6344 5.4271 -3.1171 29 1 -0.3633 -1.0239 0.0878 30 1 -0.3633 0.5880 0.8428 31 1 -0.3633 0.4358 -0.9306 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.1349 4.2415 -1.1492 35 1 2.9614 0.8603 -2.7024 36 1 1.3548 1.6023 -2.8928 37 1 1.9286 4.6575 -3.3146 38 1 2.5970 4.2406 -4.9107 39 1 1.1597 3.3884 -4.2975 40 1 4.9120 5.2225 -8.6436 41 1 7.0646 2.4302 -4.6040 42 1 9.3614 2.8042 -3.7990 43 1 9.9097 4.8542 -2.5499 44 1 8.1631 6.5340 -2.1131 45 1 5.8682 6.1638 -2.9251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361468298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:45 Heat of formation + Delta-G solvation = 33.512659 kcal Electronic energy + Delta-G solvation = -28532.746153 eV Core-core repulsion = 24710.939078 eV Total energy + Delta-G solvation = -3821.807075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.92171 -41.18274 -39.58166 -37.20414 -36.12346 -35.51790 -33.53248 -32.98237 -32.01502 -31.62677 -29.82181 -28.64181 -27.15227 -25.40025 -25.22955 -23.37826 -23.13451 -22.07660 -21.73910 -19.93564 -19.09436 -18.64786 -18.44818 -17.92748 -17.53391 -16.91652 -16.51507 -16.21678 -15.80177 -15.58588 -15.37680 -15.09066 -14.80033 -14.52901 -14.32057 -14.18073 -13.97993 -13.83976 -13.72149 -13.51490 -13.48396 -13.35106 -12.95068 -12.91103 -12.70940 -12.57209 -12.44349 -12.05219 -11.93534 -11.84827 -11.55769 -11.43083 -10.87032 -10.86344 -10.49759 -10.34108 -9.70055 -9.64269 -9.37060 -8.32966 -6.40889 0.50722 0.61495 0.69482 1.21013 1.33630 1.42349 1.46420 1.81865 2.09357 2.31813 2.32283 2.99653 3.12256 3.17622 3.58501 3.95251 3.97959 4.10748 4.14185 4.22650 4.31479 4.32893 4.35926 4.41737 4.45074 4.45999 4.50008 4.60141 4.70854 4.75538 4.80423 4.81367 4.92192 4.99107 5.07072 5.11046 5.11765 5.21568 5.32302 5.33222 5.42047 5.67035 5.69684 5.75169 5.96506 6.18941 6.28417 6.46849 6.63521 7.22990 7.24699 7.36204 8.81790 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.004378 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.685535 B = 6394.229594 C = 7356.610640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C 0.028 3.972 4 N -0.391 5.391 5 O 0.083 5.917 6 C -0.046 4.046 7 C -0.215 4.215 8 C 0.197 3.803 9 N -0.616 5.616 10 C 0.069 3.931 11 C 0.538 3.462 12 O -0.579 6.579 13 C 0.032 3.968 14 H 0.082 0.918 15 C -0.496 4.496 16 H 0.028 0.972 17 C 0.039 3.961 18 N -0.933 5.933 19 Si 0.917 3.083 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.217 1.217 23 C -0.069 4.069 24 C -0.096 4.096 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.128 4.128 28 C -0.150 4.150 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.222 0.778 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.270 0.730 41 H 0.088 0.912 42 H 0.130 0.870 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 0.260 13.359 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.132 4.132 4 N -0.099 5.099 5 O 0.022 5.978 6 C -0.127 4.127 7 C -0.220 4.220 8 C 0.073 3.927 9 N -0.349 5.349 10 C -0.073 4.073 11 C 0.328 3.672 12 O -0.458 6.458 13 C 0.010 3.990 14 H 0.100 0.900 15 C -0.533 4.533 16 H 0.046 0.954 17 C -0.161 4.161 18 N -0.571 5.571 19 Si 0.741 3.259 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.140 1.140 23 C -0.070 4.070 24 C -0.114 4.114 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.145 4.145 28 C -0.168 4.168 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.238 0.762 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.746 -0.267 14.709 16.185 hybrid contribution 0.457 0.426 -1.513 1.637 sum -6.289 0.159 13.196 14.619 Atomic orbital electron populations 1.21682 0.92416 1.03362 1.02200 1.20117 0.97592 0.86512 1.04490 1.23854 1.01494 1.00061 0.87749 1.73771 1.17734 0.93384 1.25021 1.84754 1.61887 1.27320 1.23878 1.25909 1.02182 1.01705 0.82942 1.21865 1.07079 0.94633 0.98394 1.19586 1.00349 0.90195 0.82530 1.47767 1.06016 1.30436 1.50632 1.22111 0.95027 0.91514 0.98662 1.20999 0.81939 0.87360 0.76895 1.90571 1.62111 1.40992 1.52128 1.18460 0.91068 0.94892 0.94558 0.90015 1.20343 1.52020 0.93222 0.87742 0.95362 1.25638 0.93128 1.02994 0.94365 1.70005 1.50325 1.34478 1.02291 0.86191 0.79112 0.79769 0.80870 1.20490 1.20860 1.13954 1.20235 0.96715 0.94629 0.95437 1.20891 0.93594 0.98421 0.98526 1.21374 0.95993 0.98947 0.99456 1.21362 1.00428 0.93987 0.99567 1.21388 0.92623 1.00162 1.00377 1.21333 0.98279 0.97552 0.99638 0.89703 0.93486 0.91784 0.88535 0.89933 0.76196 0.90411 0.85836 0.90752 0.91034 0.88863 0.92110 0.89328 0.85233 0.83465 0.83290 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.90 71.98 0.71 -1.38 16 2 C -0.05 -0.95 6.45 29.85 0.19 -0.75 16 3 C 0.03 0.74 6.58 43.58 0.29 1.03 16 4 N -0.39 -11.52 12.07 -49.54 -0.60 -12.12 16 5 O 0.08 2.38 11.20 71.62 0.80 3.19 16 6 C -0.05 -1.23 11.64 67.17 0.78 -0.45 16 7 C -0.21 -5.76 6.23 -19.73 -0.12 -5.88 16 8 C 0.20 5.23 5.92 85.63 0.51 5.73 16 9 N -0.62 -19.55 2.31 -851.14 -1.97 -21.52 16 10 C 0.07 1.79 9.90 127.77 1.26 3.05 16 11 C 0.54 22.13 6.65 87.66 0.58 22.71 16 12 O -0.58 -27.38 14.79 -3.03 -0.04 -27.43 16 13 C 0.03 1.37 1.04 -13.03 -0.01 1.35 16 14 H 0.08 3.18 4.16 -2.39 -0.01 3.17 16 15 C -0.50 -25.92 7.33 25.60 0.19 -25.73 16 16 H 0.03 1.73 8.05 -2.91 -0.02 1.71 16 17 C 0.04 2.05 5.47 84.65 0.46 2.52 16 18 N -0.93 -53.94 13.96 21.45 0.30 -53.64 16 19 Si 0.92 39.19 26.11 68.60 1.79 40.98 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.22 -7.73 5.61 99.48 0.56 -7.17 16 23 C -0.07 -2.96 3.84 -19.87 -0.08 -3.03 16 24 C -0.10 -4.27 8.05 22.27 0.18 -4.09 16 25 C -0.14 -5.14 10.05 22.27 0.22 -4.92 16 26 C -0.14 -4.23 10.05 22.27 0.22 -4.01 16 27 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 28 C -0.15 -5.40 8.60 22.27 0.19 -5.21 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.22 5.13 7.96 -2.91 -0.02 5.11 16 35 H 0.08 2.36 7.49 -2.39 -0.02 2.34 16 36 H 0.12 2.40 7.88 -2.39 -0.02 2.38 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 2.34 5.90 -2.39 -0.01 2.32 16 39 H 0.09 1.88 7.92 -2.39 -0.02 1.86 16 40 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.09 4.43 7.61 -2.91 -0.02 4.41 16 42 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 45 H 0.13 4.05 7.64 -2.91 -0.02 4.03 16 Total: -1.00 -70.94 373.87 6.93 -64.01 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.84 Total: 29.34 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 5.81 Total: -22.81 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -2.27 Total: -87.28 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.76 Total: -24.24 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.79 Total: 40.98 kcal Total: -70.94 6.93 -64.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.521 kcal (2) G-P(sol) polarization free energy of solvation -70.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds