Wall clock time and date at job start Tue Mar 31 2020 14:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46928 * 2 1 4 4 N 1.30172 * 126.80127 * 270.02563 * 3 2 1 5 5 O 1.20916 * 111.60310 * 179.97438 * 4 3 2 6 6 C 1.34033 * 111.56911 * 359.75800 * 5 4 3 7 7 C 1.50700 * 126.77832 * 180.28689 * 6 5 4 8 8 C 1.35451 * 106.44465 * 0.38458 * 6 5 4 9 9 C 1.50702 * 128.00428 * 179.91322 * 8 6 5 10 10 N 1.46503 * 109.46987 * 269.67470 * 9 8 6 11 11 C 1.34779 * 120.00328 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99419 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00080 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.47295 * 299.99387 * 13 11 10 15 15 C 1.50696 * 109.47530 * 59.99483 * 13 11 10 16 16 H 1.07997 * 120.00260 * 235.33651 * 15 13 11 17 17 C 1.37879 * 119.99977 * 55.33425 * 15 13 11 18 18 N 1.31516 * 119.99735 * 1.97120 * 17 15 13 19 19 Si 1.86800 * 120.00111 * 181.96775 * 17 15 13 20 20 H 1.48495 * 109.47133 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46977 * 120.00228 * 19 17 15 22 22 H 1.48496 * 109.47065 * 239.99944 * 19 17 15 23 23 C 1.50707 * 109.46942 * 179.97438 * 13 11 10 24 24 C 1.38230 * 120.00383 * 47.22241 * 23 13 11 25 25 C 1.38230 * 120.00043 * 180.02562 * 24 23 13 26 26 C 1.38229 * 120.00376 * 359.95097 * 25 24 23 27 27 C 1.38236 * 119.99772 * 359.97438 * 26 25 24 28 28 C 1.38235 * 120.00185 * 0.06932 * 27 26 25 29 29 H 1.09002 * 109.47165 * 299.99861 * 1 2 3 30 30 H 1.08993 * 109.47489 * 60.00433 * 1 2 3 31 31 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47153 * 239.99632 * 2 1 3 33 33 H 1.08997 * 109.46795 * 119.99754 * 2 1 3 34 34 H 1.09003 * 109.47344 * 270.11110 * 7 6 5 35 35 H 1.08999 * 109.47423 * 30.11853 * 7 6 5 36 36 H 1.09002 * 109.47232 * 150.11378 * 7 6 5 37 37 H 1.09006 * 109.47288 * 149.68038 * 9 8 6 38 38 H 1.09001 * 109.47758 * 29.67218 * 9 8 6 39 39 H 0.97004 * 120.00070 * 0.02562 * 10 9 8 40 40 H 0.97003 * 120.00319 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.99547 * 359.97438 * 24 23 13 42 42 H 1.08001 * 119.99875 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00421 * 179.72884 * 26 25 24 44 44 H 1.07996 * 120.00326 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.00529 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2918 2.1562 -1.0423 5 8 2.6804 3.2565 -0.7253 6 6 2.7252 3.3984 0.6067 7 6 3.1508 4.6265 1.3695 8 6 2.3145 2.2194 1.1320 9 6 2.1824 1.8473 2.5864 10 7 3.4419 1.2662 3.0580 11 6 3.5579 0.8564 4.3367 12 8 2.6198 0.9692 5.0970 13 6 4.8536 0.2592 4.8219 14 1 5.0842 -0.6319 4.2380 15 6 5.9627 1.2664 4.6603 16 1 6.8478 1.0095 4.0973 17 6 5.8476 2.5162 5.2312 18 7 4.7873 2.8159 5.9493 19 14 7.1976 3.7836 4.9850 20 1 8.2742 3.2027 4.1432 21 1 6.6350 4.9815 4.3112 22 1 7.7563 4.1743 6.3041 23 6 4.7216 -0.1131 6.2763 24 6 3.6122 -0.8126 6.7128 25 6 3.4909 -1.1535 8.0469 26 6 4.4795 -0.7958 8.9444 27 6 5.5897 -0.0976 8.5076 28 6 5.7107 0.2441 7.1737 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2241 4.5851 1.5551 35 1 2.9171 5.5164 0.7850 36 1 2.6190 4.6663 2.3201 37 1 1.3799 1.1191 2.7037 38 1 1.9526 2.7386 3.1701 39 1 4.1923 1.1763 2.4499 40 1 4.7064 3.6950 6.3513 41 1 2.8397 -1.0920 6.0116 42 1 2.6239 -1.6997 8.3881 43 1 4.3827 -1.0584 9.9875 44 1 6.3620 0.1822 9.2088 45 1 6.5778 0.7900 6.8324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361468903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:27 Heat of formation + Delta-G solvation = 36.171429 kcal Electronic energy + Delta-G solvation = -28381.095992 eV Core-core repulsion = 24559.404210 eV Total energy + Delta-G solvation = -3821.691782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.84048 -38.98403 -37.52606 -35.90665 -34.28206 -33.62996 -32.57443 -31.24113 -30.83459 -29.67517 -28.37298 -27.34421 -25.95243 -24.32204 -23.77306 -21.47294 -21.22841 -20.48253 -19.82235 -19.23594 -17.53518 -17.11330 -16.66790 -15.89179 -15.25590 -15.02729 -14.85204 -14.79077 -14.40755 -14.05210 -13.77212 -13.63324 -13.29032 -13.16925 -12.97121 -12.71423 -12.55576 -12.42070 -12.21672 -12.03238 -11.92674 -11.72990 -11.56528 -11.39851 -11.28668 -11.03192 -10.78709 -10.71621 -10.46356 -10.05874 -9.91364 -9.68798 -9.40498 -9.16532 -8.73895 -8.29978 -8.05030 -7.69194 -7.40139 -6.16788 -4.32755 1.52135 2.21888 2.55273 2.61465 3.14053 3.17228 3.25790 3.27685 4.10868 4.16385 4.26986 4.48629 4.50597 4.95102 5.01900 5.04055 5.10988 5.12533 5.20836 5.32241 5.50733 5.55191 5.63237 5.77460 5.85659 5.90325 5.93953 5.98058 6.01780 6.05837 6.09626 6.17808 6.27522 6.38486 6.55845 6.67494 6.79811 6.89401 7.13046 7.21324 7.44503 7.55485 7.64110 7.66540 7.78152 8.15923 8.26744 8.34863 8.57670 8.77677 9.33578 9.65109 10.83452 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.004390 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.784927 B = 6376.377889 C = 8031.433512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.037 3.963 4 N -0.372 5.372 5 O 0.091 5.909 6 C -0.010 4.010 7 C -0.076 4.076 8 C -0.211 4.211 9 C 0.207 3.793 10 N -0.732 5.732 11 C 0.552 3.448 12 O -0.546 6.546 13 C 0.057 3.943 14 H 0.056 0.944 15 C -0.539 4.539 16 H 0.066 0.934 17 C 0.075 3.925 18 N -0.841 5.841 19 Si 0.883 3.117 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.014 4.014 24 C -0.100 4.100 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.148 4.148 28 C -0.065 4.065 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.396 0.604 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -1.733 -7.392 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.122 4.122 4 N -0.078 5.078 5 O 0.028 5.972 6 C -0.074 4.074 7 C -0.133 4.133 8 C -0.215 4.215 9 C 0.083 3.917 10 N -0.386 5.386 11 C 0.341 3.659 12 O -0.423 6.423 13 C 0.035 3.965 14 H 0.074 0.926 15 C -0.576 4.576 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.474 5.474 19 Si 0.710 3.290 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.015 4.015 24 C -0.118 4.118 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.166 4.166 28 C -0.083 4.083 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.230 0.770 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.858 -1.673 -8.022 9.526 hybrid contribution 0.949 1.063 0.505 1.512 sum -3.908 -0.610 -7.517 8.494 Atomic orbital electron populations 1.21712 0.94035 1.02238 1.02327 1.19953 0.96337 0.88271 1.03952 1.23422 1.01403 0.99003 0.88403 1.73802 1.17243 0.92832 1.23953 1.84783 1.62906 1.26887 1.22643 1.24360 1.00661 0.98896 0.83505 1.20401 1.03430 0.90920 0.98564 1.21114 1.09034 0.93685 0.97697 1.19138 0.88637 0.98690 0.85262 1.45870 1.13919 1.65868 1.12916 1.21033 0.89434 0.75961 0.79425 1.90545 1.41554 1.56190 1.53986 1.17879 0.92198 0.95978 0.90395 0.92586 1.20732 1.03210 0.97235 1.36461 0.91538 1.25034 0.95546 0.98267 0.94401 1.70089 1.26407 1.21132 1.29757 0.86665 0.82349 0.81691 0.78273 1.19543 1.20895 1.20802 1.19801 0.92533 0.92717 0.96418 1.20963 0.97233 0.98503 0.95131 1.20816 0.98548 1.02753 0.94139 1.20770 0.95665 1.01791 0.98065 1.20990 0.98098 1.01192 0.96344 1.21140 0.99708 0.95957 0.91458 0.92140 0.92673 0.91668 0.90239 0.89167 0.88899 0.90146 0.88671 0.91517 0.91191 0.77042 0.92588 0.87520 0.88132 0.88242 0.88083 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.90 37.16 0.37 -1.12 16 2 C -0.05 -0.55 6.44 -27.88 -0.18 -0.73 16 3 C 0.04 0.53 6.58 -82.10 -0.54 -0.01 16 4 N -0.37 -5.67 12.07 33.42 0.40 -5.27 16 5 O 0.09 1.33 11.20 17.20 0.19 1.52 16 6 C -0.01 -0.14 7.49 -35.30 -0.26 -0.40 16 7 C -0.08 -0.89 10.30 36.01 0.37 -0.52 16 8 C -0.21 -3.11 5.69 -104.43 -0.59 -3.70 16 9 C 0.21 3.43 6.00 -5.19 -0.03 3.40 16 10 N -0.73 -13.70 5.45 -61.47 -0.33 -14.03 16 11 C 0.55 12.35 5.45 -10.99 -0.06 12.29 16 12 O -0.55 -13.83 13.95 5.55 0.08 -13.75 16 13 C 0.06 1.28 2.78 -94.08 -0.26 1.02 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.54 -12.64 7.12 -34.44 -0.25 -12.88 16 16 H 0.07 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.08 1.82 3.99 -17.82 -0.07 1.75 16 18 N -0.84 -21.89 10.89 55.43 0.60 -21.29 16 19 Si 0.88 19.01 29.54 -169.99 -5.02 13.98 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.01 -0.32 4.52 -104.62 -0.47 -0.79 16 24 C -0.10 -2.21 8.21 -39.59 -0.33 -2.54 16 25 C -0.14 -2.91 10.05 -39.59 -0.40 -3.31 16 26 C -0.14 -2.82 10.05 -39.59 -0.40 -3.22 16 27 C -0.15 -3.05 10.05 -39.58 -0.40 -3.45 16 28 C -0.06 -1.48 8.20 -39.58 -0.32 -1.81 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.16 7.44 -51.93 -0.39 0.77 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.25 7.44 -51.93 -0.39 0.87 16 39 H 0.40 7.05 8.35 -40.82 -0.34 6.71 16 40 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.11 2.33 7.01 -52.49 -0.37 1.96 16 42 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.13 3.00 6.02 -52.49 -0.32 2.69 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -28.87 377.05 -8.64 -37.50 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.42 Total: 11.68 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -3.82 Total: -16.03 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.67 Total: -40.59 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.27 Total: -12.23 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.87 -8.64 -37.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.674 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds