Wall clock time and date at job start Tue Mar 31 2020 14:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46928 * 2 1 4 4 N 1.30172 * 126.80127 * 270.02563 * 3 2 1 5 5 O 1.20916 * 111.60310 * 179.97438 * 4 3 2 6 6 C 1.34033 * 111.56911 * 359.75800 * 5 4 3 7 7 C 1.50700 * 126.77832 * 180.28689 * 6 5 4 8 8 C 1.35451 * 106.44465 * 0.38458 * 6 5 4 9 9 C 1.50702 * 128.00428 * 179.91322 * 8 6 5 10 10 N 1.46503 * 109.46987 * 269.67470 * 9 8 6 11 11 C 1.34779 * 120.00328 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99419 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00080 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.47295 * 299.99387 * 13 11 10 15 15 C 1.50696 * 109.47530 * 59.99483 * 13 11 10 16 16 H 1.07997 * 120.00260 * 235.33651 * 15 13 11 17 17 C 1.37879 * 119.99977 * 55.33425 * 15 13 11 18 18 N 1.31516 * 119.99735 * 1.97120 * 17 15 13 19 19 Si 1.86800 * 120.00111 * 181.96775 * 17 15 13 20 20 H 1.48495 * 109.47133 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46977 * 120.00228 * 19 17 15 22 22 H 1.48496 * 109.47065 * 239.99944 * 19 17 15 23 23 C 1.50707 * 109.46942 * 179.97438 * 13 11 10 24 24 C 1.38230 * 120.00383 * 47.22241 * 23 13 11 25 25 C 1.38230 * 120.00043 * 180.02562 * 24 23 13 26 26 C 1.38229 * 120.00376 * 359.95097 * 25 24 23 27 27 C 1.38236 * 119.99772 * 359.97438 * 26 25 24 28 28 C 1.38235 * 120.00185 * 0.06932 * 27 26 25 29 29 H 1.09002 * 109.47165 * 299.99861 * 1 2 3 30 30 H 1.08993 * 109.47489 * 60.00433 * 1 2 3 31 31 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47153 * 239.99632 * 2 1 3 33 33 H 1.08997 * 109.46795 * 119.99754 * 2 1 3 34 34 H 1.09003 * 109.47344 * 270.11110 * 7 6 5 35 35 H 1.08999 * 109.47423 * 30.11853 * 7 6 5 36 36 H 1.09002 * 109.47232 * 150.11378 * 7 6 5 37 37 H 1.09006 * 109.47288 * 149.68038 * 9 8 6 38 38 H 1.09001 * 109.47758 * 29.67218 * 9 8 6 39 39 H 0.97004 * 120.00070 * 0.02562 * 10 9 8 40 40 H 0.97003 * 120.00319 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.99547 * 359.97438 * 24 23 13 42 42 H 1.08001 * 119.99875 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00421 * 179.72884 * 26 25 24 44 44 H 1.07996 * 120.00326 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.00529 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2918 2.1562 -1.0423 5 8 2.6804 3.2565 -0.7253 6 6 2.7252 3.3984 0.6067 7 6 3.1508 4.6265 1.3695 8 6 2.3145 2.2194 1.1320 9 6 2.1824 1.8473 2.5864 10 7 3.4419 1.2662 3.0580 11 6 3.5579 0.8564 4.3367 12 8 2.6198 0.9692 5.0970 13 6 4.8536 0.2592 4.8219 14 1 5.0842 -0.6319 4.2380 15 6 5.9627 1.2664 4.6603 16 1 6.8478 1.0095 4.0973 17 6 5.8476 2.5162 5.2312 18 7 4.7873 2.8159 5.9493 19 14 7.1976 3.7836 4.9850 20 1 8.2742 3.2027 4.1432 21 1 6.6350 4.9815 4.3112 22 1 7.7563 4.1743 6.3041 23 6 4.7216 -0.1131 6.2763 24 6 3.6122 -0.8126 6.7128 25 6 3.4909 -1.1535 8.0469 26 6 4.4795 -0.7958 8.9444 27 6 5.5897 -0.0976 8.5076 28 6 5.7107 0.2441 7.1737 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2241 4.5851 1.5551 35 1 2.9171 5.5164 0.7850 36 1 2.6190 4.6663 2.3201 37 1 1.3799 1.1191 2.7037 38 1 1.9526 2.7386 3.1701 39 1 4.1923 1.1763 2.4499 40 1 4.7064 3.6950 6.3513 41 1 2.8397 -1.0920 6.0116 42 1 2.6239 -1.6997 8.3881 43 1 4.3827 -1.0584 9.9875 44 1 6.3620 0.1822 9.2088 45 1 6.5778 0.7900 6.8324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361468903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:26 Heat of formation + Delta-G solvation = 21.550017 kcal Electronic energy + Delta-G solvation = -28381.730024 eV Core-core repulsion = 24559.404210 eV Total energy + Delta-G solvation = -3822.325814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.98806 -40.68219 -39.14009 -37.13995 -35.50097 -35.43231 -33.92853 -32.60448 -32.25873 -31.31774 -29.73946 -28.75916 -27.35457 -25.63682 -25.18669 -22.95886 -22.66746 -22.04250 -20.94726 -20.88813 -18.76004 -18.65136 -18.07830 -17.38712 -16.98431 -16.68643 -16.50274 -15.99330 -15.56483 -15.52251 -15.30262 -15.01871 -14.61717 -14.32446 -14.18658 -14.03746 -13.94233 -13.85822 -13.67763 -13.56705 -13.24138 -13.11283 -12.97164 -12.75860 -12.52593 -12.48342 -12.38113 -12.24610 -11.77289 -11.73487 -11.39234 -11.17331 -11.00376 -10.61962 -10.40490 -9.99590 -9.66311 -9.34482 -9.06501 -8.03173 -6.22642 0.37835 0.90585 0.96208 1.08299 1.41553 1.49263 1.56352 2.05727 2.35856 2.49801 2.89614 3.12685 3.23722 3.39938 3.43736 3.76137 3.91817 4.17430 4.31675 4.36372 4.37920 4.38783 4.44490 4.53350 4.55394 4.63157 4.64316 4.72203 4.85816 4.88178 4.95437 4.97967 5.04243 5.09209 5.11051 5.14731 5.19972 5.28390 5.49107 5.57803 5.74634 5.87614 5.93254 5.99004 6.01984 6.46288 6.56566 6.78867 7.08288 7.21672 7.45985 7.93782 8.95857 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.004390 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.784927 B = 6376.377889 C = 8031.433512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.041 3.959 4 N -0.388 5.388 5 O 0.087 5.913 6 C 0.000 4.000 7 C -0.076 4.076 8 C -0.226 4.226 9 C 0.218 3.782 10 N -0.722 5.722 11 C 0.554 3.446 12 O -0.580 6.580 13 C 0.047 3.953 14 H 0.066 0.934 15 C -0.534 4.534 16 H 0.067 0.933 17 C 0.046 3.954 18 N -0.870 5.870 19 Si 0.934 3.066 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.290 1.290 23 C -0.034 4.034 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.153 4.153 28 C -0.087 4.087 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.401 0.599 40 H 0.257 0.743 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.124 0.876 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -1.961 -7.413 8.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 C -0.119 4.119 4 N -0.097 5.097 5 O 0.026 5.974 6 C -0.064 4.064 7 C -0.133 4.133 8 C -0.231 4.231 9 C 0.094 3.906 10 N -0.374 5.374 11 C 0.343 3.657 12 O -0.459 6.459 13 C 0.026 3.974 14 H 0.083 0.917 15 C -0.572 4.572 16 H 0.085 0.915 17 C -0.159 4.159 18 N -0.504 5.504 19 Si 0.760 3.240 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.217 1.217 23 C -0.035 4.035 24 C -0.135 4.135 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.171 4.171 28 C -0.105 4.105 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.235 0.765 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.142 0.858 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.775 -1.895 -8.090 9.583 hybrid contribution 0.935 1.083 0.516 1.521 sum -3.840 -0.812 -7.574 8.531 Atomic orbital electron populations 1.21685 0.92858 1.03454 1.01833 1.20083 0.97305 0.86875 1.04424 1.23778 1.00420 0.99849 0.87831 1.73799 1.18285 0.93197 1.24379 1.84774 1.62993 1.26834 1.22754 1.24717 0.99140 0.99199 0.83389 1.20495 1.03054 0.91249 0.98468 1.20932 1.10813 0.94554 0.96785 1.19001 0.87541 0.97897 0.86170 1.45749 1.14862 1.64844 1.11933 1.20943 0.88880 0.75770 0.80090 1.90515 1.42513 1.57714 1.55151 1.17987 0.92267 0.96235 0.90899 0.91658 1.20874 1.03277 0.97376 1.35696 0.91498 1.25483 0.96760 0.99560 0.94093 1.70234 1.28101 1.20933 1.31135 0.85870 0.80466 0.79945 0.77672 1.18931 1.20579 1.21657 1.19919 0.93281 0.93615 0.96689 1.21042 0.96957 0.99228 0.96282 1.21189 0.99647 1.02221 0.93375 1.21167 0.94589 1.00461 0.99779 1.21304 0.99217 1.00780 0.95806 1.21121 0.99490 0.97116 0.92777 0.92924 0.92815 0.89640 0.89169 0.89237 0.89061 0.87243 0.89262 0.91274 0.92668 0.76476 0.93404 0.88065 0.85292 0.84576 0.85778 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.90 71.98 0.71 -1.99 16 2 C -0.05 -1.09 6.44 29.85 0.19 -0.89 16 3 C 0.04 1.13 6.58 43.58 0.29 1.42 16 4 N -0.39 -11.48 12.07 -49.58 -0.60 -12.07 16 5 O 0.09 2.46 11.20 71.71 0.80 3.26 16 6 C 0.00 0.00 7.49 25.04 0.19 0.19 16 7 C -0.08 -1.68 10.30 71.24 0.73 -0.95 16 8 C -0.23 -6.56 5.69 -19.74 -0.11 -6.67 16 9 C 0.22 7.25 6.00 85.63 0.51 7.76 16 10 N -0.72 -27.15 5.45 -466.77 -2.54 -29.69 16 11 C 0.55 25.09 5.45 87.66 0.48 25.57 16 12 O -0.58 -29.89 13.95 -3.04 -0.04 -29.93 16 13 C 0.05 2.17 2.78 -13.03 -0.04 2.13 16 14 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 15 C -0.53 -25.17 7.12 25.60 0.18 -24.99 16 16 H 0.07 3.08 7.81 -2.91 -0.02 3.06 16 17 C 0.05 2.21 3.99 84.65 0.34 2.55 16 18 N -0.87 -45.83 10.89 21.45 0.23 -45.60 16 19 Si 0.93 38.93 29.54 68.60 2.03 40.96 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 23 C -0.03 -1.60 4.52 -19.86 -0.09 -1.69 16 24 C -0.12 -5.16 8.21 22.27 0.18 -4.98 16 25 C -0.15 -5.65 10.05 22.27 0.22 -5.43 16 26 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 27 C -0.15 -6.10 10.05 22.27 0.22 -5.88 16 28 C -0.09 -3.99 8.20 22.27 0.18 -3.81 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 2.13 7.44 -2.39 -0.02 2.11 16 37 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.06 2.02 7.44 -2.39 -0.02 2.00 16 39 H 0.40 14.24 8.35 -92.70 -0.77 13.47 16 40 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 41 H 0.10 4.48 7.01 -2.91 -0.02 4.46 16 42 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 44 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 45 H 0.11 5.33 6.02 -2.91 -0.02 5.32 16 Total: -1.00 -61.38 377.05 4.54 -56.84 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.23 Total: 38.86 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.42 Total: -22.62 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -2.91 Total: -87.36 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: 0.76 Total: -26.67 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -61.38 4.54 -56.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.389 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds