Wall clock time and date at job start Tue Mar 31 2020 14:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46770 * 2 1 4 4 N 1.30176 * 126.80710 * 270.16945 * 3 2 1 5 5 O 1.20921 * 111.60500 * 180.25411 * 4 3 2 6 6 C 1.34033 * 111.57134 * 359.74483 * 5 4 3 7 7 C 1.50701 * 126.78097 * 180.02562 * 6 5 4 8 8 C 1.35454 * 106.44484 * 0.02562 * 6 5 4 9 9 C 1.50698 * 128.00771 * 179.97438 * 8 6 5 10 10 N 1.46499 * 109.47414 * 90.02531 * 9 8 6 11 11 C 1.34779 * 120.00219 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99681 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99955 * 179.97438 * 11 10 9 14 14 H 1.08991 * 109.47355 * 59.99841 * 13 11 10 15 15 C 1.50704 * 109.46746 * 299.99858 * 13 11 10 16 16 H 1.07999 * 120.00229 * 324.87818 * 15 13 11 17 17 C 1.37879 * 119.99984 * 144.88507 * 15 13 11 18 18 N 1.31515 * 119.99954 * 5.18946 * 17 15 13 19 19 Si 1.86797 * 120.00183 * 185.19103 * 17 15 13 20 20 H 1.48496 * 109.47132 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46858 * 119.99630 * 19 17 15 22 22 H 1.48493 * 109.47195 * 239.99614 * 19 17 15 23 23 C 1.50701 * 109.46978 * 180.02562 * 13 11 10 24 24 C 1.38234 * 120.00044 * 66.00816 * 23 13 11 25 25 C 1.38240 * 119.99371 * 179.81098 * 24 23 13 26 26 C 1.38235 * 120.00326 * 0.39860 * 25 24 23 27 27 C 1.38237 * 119.99640 * 359.85566 * 26 25 24 28 28 C 1.38226 * 120.00192 * 359.95671 * 27 26 25 29 29 H 1.08994 * 109.47603 * 59.99871 * 1 2 3 30 30 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47152 * 299.99158 * 1 2 3 32 32 H 1.09004 * 109.47152 * 240.00842 * 2 1 3 33 33 H 1.08994 * 109.47603 * 120.00129 * 2 1 3 34 34 H 1.09003 * 109.46858 * 270.00057 * 7 6 5 35 35 H 1.08995 * 109.46953 * 29.99712 * 7 6 5 36 36 H 1.09000 * 109.47024 * 149.99832 * 7 6 5 37 37 H 1.09001 * 109.47077 * 330.02240 * 9 8 6 38 38 H 1.09004 * 109.47274 * 210.02414 * 9 8 6 39 39 H 0.97005 * 119.99615 * 359.97438 * 10 9 8 40 40 H 0.96999 * 120.00475 * 180.02562 * 18 17 15 41 41 H 1.07994 * 120.00305 * 359.97438 * 24 23 13 42 42 H 1.08000 * 119.99452 * 180.22958 * 25 24 23 43 43 H 1.07994 * 120.00076 * 179.83246 * 26 25 24 44 44 H 1.08001 * 119.99280 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.00157 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1572 -1.0423 5 8 2.6838 3.2554 -0.7252 6 6 2.7356 3.3948 0.6069 7 6 3.1750 4.6179 1.3697 8 6 2.3152 2.2191 1.1321 9 6 2.1843 1.8465 2.5864 10 7 0.8416 2.1913 3.0600 11 6 0.4948 1.9471 4.3394 12 8 1.2943 1.4415 5.0983 13 6 -0.8863 2.3023 4.8267 14 1 -1.6286 1.7570 4.2440 15 6 -1.1102 3.7839 4.6651 16 1 -0.2913 4.4728 4.8101 17 6 -2.3608 4.2598 4.3324 18 7 -3.3803 3.4325 4.2561 19 14 -2.6070 6.0795 3.9901 20 1 -1.3126 6.7913 4.1419 21 1 -3.1115 6.2587 2.6049 22 1 -3.5927 6.6352 4.9517 23 6 -1.0167 1.9307 6.2813 24 6 -0.2618 2.5899 7.2334 25 6 -0.3844 2.2515 8.5682 26 6 -1.2558 1.2485 8.9498 27 6 -2.0067 0.5859 7.9970 28 6 -1.8870 0.9268 6.6628 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 4.2484 4.5661 1.5522 35 1 2.9482 5.5105 0.7868 36 1 2.6462 4.6617 2.3218 37 1 2.9265 2.3919 3.1694 38 1 2.3467 0.7749 2.7030 39 1 0.2023 2.5960 2.4530 40 1 -4.2600 3.7672 4.0217 41 1 0.4217 3.3708 6.9349 42 1 0.2026 2.7691 9.3125 43 1 -1.3495 0.9824 9.9923 44 1 -2.6872 -0.1980 8.2952 45 1 -2.4734 0.4087 5.9183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361468904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:30 Heat of formation + Delta-G solvation = 27.493155 kcal Electronic energy + Delta-G solvation = -28037.292057 eV Core-core repulsion = 24215.223956 eV Total energy + Delta-G solvation = -3822.068100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.92055 -39.18939 -37.79994 -36.03899 -34.39900 -33.67636 -32.77900 -31.28440 -31.09335 -29.93692 -28.53485 -27.45485 -26.05142 -24.33673 -23.79643 -21.64585 -21.51345 -20.71229 -19.94921 -19.32374 -17.61037 -17.12664 -16.76950 -16.09519 -15.86797 -15.25163 -14.92668 -14.60113 -14.43244 -14.19207 -13.95508 -13.79205 -13.41113 -13.29392 -13.17746 -12.82430 -12.57348 -12.51197 -12.30126 -12.24337 -12.13074 -11.66600 -11.59026 -11.53680 -11.36400 -11.08753 -11.02559 -10.78161 -10.42839 -10.27945 -10.09308 -9.92262 -9.44333 -9.29994 -8.80888 -8.61089 -8.41566 -7.94491 -7.60821 -6.30785 -4.37282 1.42710 2.13512 2.38087 2.41286 3.08759 3.15081 3.24657 3.26560 3.66290 4.07960 4.19745 4.24913 4.42440 4.82214 4.83654 4.91890 5.06511 5.10116 5.24902 5.33112 5.34806 5.45876 5.59244 5.69306 5.72211 5.79232 5.83441 5.88033 5.90161 5.95000 6.04446 6.11130 6.19314 6.25149 6.33096 6.49217 6.59615 6.84536 6.96950 7.08936 7.17337 7.37057 7.44414 7.59405 7.73983 7.94540 8.05510 8.28224 8.31984 8.66719 9.17682 9.29045 10.77433 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.004193 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.123618 B = 6676.468510 C = 7647.048311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.039 3.961 4 N -0.370 5.370 5 O 0.093 5.907 6 C -0.009 4.009 7 C -0.079 4.079 8 C -0.215 4.215 9 C 0.202 3.798 10 N -0.726 5.726 11 C 0.529 3.471 12 O -0.566 6.566 13 C 0.052 3.948 14 H 0.088 0.912 15 C -0.514 4.514 16 H 0.063 0.937 17 C 0.074 3.926 18 N -0.876 5.876 19 Si 0.896 3.104 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.008 4.008 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.406 0.594 40 H 0.266 0.734 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.220 -2.289 -4.870 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.121 4.121 4 N -0.076 5.076 5 O 0.030 5.970 6 C -0.074 4.074 7 C -0.136 4.136 8 C -0.219 4.219 9 C 0.078 3.922 10 N -0.379 5.379 11 C 0.318 3.682 12 O -0.445 6.445 13 C 0.030 3.970 14 H 0.106 0.894 15 C -0.552 4.552 16 H 0.081 0.919 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.723 3.277 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.010 4.010 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.136 4.136 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.240 0.760 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.525 -2.848 -5.698 10.642 hybrid contribution -0.672 1.185 0.287 1.392 sum 7.854 -1.662 -5.411 9.681 Atomic orbital electron populations 1.21734 0.93464 1.02450 1.02931 1.19956 0.96859 0.88017 1.03515 1.23453 1.01105 0.99174 0.88329 1.73824 1.17144 0.92712 1.23891 1.84797 1.62591 1.27063 1.22540 1.24362 1.00878 0.98470 0.83682 1.20430 1.02458 0.91451 0.99246 1.21035 1.09302 0.94078 0.97504 1.19231 0.86748 1.00501 0.85752 1.46006 1.13706 1.65386 1.12822 1.21687 0.91165 0.75046 0.80253 1.90590 1.54004 1.44713 1.55197 1.18109 0.89666 0.99005 0.90171 0.89401 1.20708 0.95917 0.89211 1.49370 0.91866 1.24971 0.95802 0.98167 0.94185 1.69921 1.00256 1.34881 1.46077 0.86468 0.78558 0.84668 0.78039 1.19447 1.20726 1.20788 1.20005 0.92721 0.91505 0.96720 1.20806 0.98573 0.98880 0.92065 1.20949 0.99694 0.98572 0.96066 1.20793 0.99177 0.98554 0.98208 1.20897 1.00151 1.00370 0.93585 1.20977 0.99379 0.97822 0.95414 0.92569 0.91665 0.91493 0.90354 0.89528 0.89380 0.89714 0.88273 0.90929 0.90995 0.75951 0.92397 0.87172 0.87638 0.87754 0.87604 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 37.16 0.37 -1.38 16 2 C -0.05 -0.53 6.44 -27.88 -0.18 -0.71 16 3 C 0.04 0.54 6.58 -82.10 -0.54 0.00 16 4 N -0.37 -5.48 12.07 33.42 0.40 -5.07 16 5 O 0.09 1.29 11.20 17.19 0.19 1.48 16 6 C -0.01 -0.12 7.49 -35.30 -0.26 -0.38 16 7 C -0.08 -0.74 10.24 36.01 0.37 -0.37 16 8 C -0.21 -2.91 5.69 -104.42 -0.59 -3.51 16 9 C 0.20 2.96 5.92 -5.19 -0.03 2.93 16 10 N -0.73 -12.59 5.45 -61.47 -0.33 -12.93 16 11 C 0.53 11.09 7.04 -10.98 -0.08 11.01 16 12 O -0.57 -13.05 15.42 5.56 0.09 -12.96 16 13 C 0.05 1.18 2.38 -94.07 -0.22 0.95 16 14 H 0.09 2.14 7.13 -51.93 -0.37 1.77 16 15 C -0.51 -12.38 7.47 -34.44 -0.26 -12.63 16 16 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 17 C 0.07 1.82 5.45 -17.82 -0.10 1.73 16 18 N -0.88 -22.65 12.84 55.43 0.71 -21.94 16 19 Si 0.90 19.45 29.54 -169.99 -5.02 14.42 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 C -0.01 -0.19 4.30 -104.62 -0.45 -0.64 16 24 C -0.09 -1.87 8.31 -39.58 -0.33 -2.20 16 25 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 26 C -0.15 -2.75 10.05 -39.58 -0.40 -3.14 16 27 C -0.13 -2.52 10.05 -39.59 -0.40 -2.92 16 28 C -0.12 -2.53 9.67 -39.59 -0.38 -2.92 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.94 7.65 -51.93 -0.40 0.54 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 37 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.07 1.06 7.65 -51.93 -0.40 0.66 16 39 H 0.41 7.05 8.35 -40.82 -0.34 6.71 16 40 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 41 H 0.11 2.43 7.89 -52.49 -0.41 2.02 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.11 2.31 7.96 -52.48 -0.42 1.89 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -28.84 386.76 -8.54 -37.38 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.53 Total: 10.99 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -3.88 Total: -17.21 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.78 Total: -39.94 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.28 Total: -11.48 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.84 -8.54 -37.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.871 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds