Wall clock time and date at job start Tue Mar 31 2020 14:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46770 * 2 1 4 4 N 1.30176 * 126.80710 * 270.16945 * 3 2 1 5 5 O 1.20921 * 111.60500 * 180.25411 * 4 3 2 6 6 C 1.34033 * 111.57134 * 359.74483 * 5 4 3 7 7 C 1.50701 * 126.78097 * 180.02562 * 6 5 4 8 8 C 1.35454 * 106.44484 * 0.02562 * 6 5 4 9 9 C 1.50698 * 128.00771 * 179.97438 * 8 6 5 10 10 N 1.46499 * 109.47414 * 90.02531 * 9 8 6 11 11 C 1.34779 * 120.00219 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99681 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99955 * 179.97438 * 11 10 9 14 14 H 1.08991 * 109.47355 * 59.99841 * 13 11 10 15 15 C 1.50704 * 109.46746 * 299.99858 * 13 11 10 16 16 H 1.07999 * 120.00229 * 324.87818 * 15 13 11 17 17 C 1.37879 * 119.99984 * 144.88507 * 15 13 11 18 18 N 1.31515 * 119.99954 * 5.18946 * 17 15 13 19 19 Si 1.86797 * 120.00183 * 185.19103 * 17 15 13 20 20 H 1.48496 * 109.47132 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46858 * 119.99630 * 19 17 15 22 22 H 1.48493 * 109.47195 * 239.99614 * 19 17 15 23 23 C 1.50701 * 109.46978 * 180.02562 * 13 11 10 24 24 C 1.38234 * 120.00044 * 66.00816 * 23 13 11 25 25 C 1.38240 * 119.99371 * 179.81098 * 24 23 13 26 26 C 1.38235 * 120.00326 * 0.39860 * 25 24 23 27 27 C 1.38237 * 119.99640 * 359.85566 * 26 25 24 28 28 C 1.38226 * 120.00192 * 359.95671 * 27 26 25 29 29 H 1.08994 * 109.47603 * 59.99871 * 1 2 3 30 30 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47152 * 299.99158 * 1 2 3 32 32 H 1.09004 * 109.47152 * 240.00842 * 2 1 3 33 33 H 1.08994 * 109.47603 * 120.00129 * 2 1 3 34 34 H 1.09003 * 109.46858 * 270.00057 * 7 6 5 35 35 H 1.08995 * 109.46953 * 29.99712 * 7 6 5 36 36 H 1.09000 * 109.47024 * 149.99832 * 7 6 5 37 37 H 1.09001 * 109.47077 * 330.02240 * 9 8 6 38 38 H 1.09004 * 109.47274 * 210.02414 * 9 8 6 39 39 H 0.97005 * 119.99615 * 359.97438 * 10 9 8 40 40 H 0.96999 * 120.00475 * 180.02562 * 18 17 15 41 41 H 1.07994 * 120.00305 * 359.97438 * 24 23 13 42 42 H 1.08000 * 119.99452 * 180.22958 * 25 24 23 43 43 H 1.07994 * 120.00076 * 179.83246 * 26 25 24 44 44 H 1.08001 * 119.99280 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.00157 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1572 -1.0423 5 8 2.6838 3.2554 -0.7252 6 6 2.7356 3.3948 0.6069 7 6 3.1750 4.6179 1.3697 8 6 2.3152 2.2191 1.1321 9 6 2.1843 1.8465 2.5864 10 7 0.8416 2.1913 3.0600 11 6 0.4948 1.9471 4.3394 12 8 1.2943 1.4415 5.0983 13 6 -0.8863 2.3023 4.8267 14 1 -1.6286 1.7570 4.2440 15 6 -1.1102 3.7839 4.6651 16 1 -0.2913 4.4728 4.8101 17 6 -2.3608 4.2598 4.3324 18 7 -3.3803 3.4325 4.2561 19 14 -2.6070 6.0795 3.9901 20 1 -1.3126 6.7913 4.1419 21 1 -3.1115 6.2587 2.6049 22 1 -3.5927 6.6352 4.9517 23 6 -1.0167 1.9307 6.2813 24 6 -0.2618 2.5899 7.2334 25 6 -0.3844 2.2515 8.5682 26 6 -1.2558 1.2485 8.9498 27 6 -2.0067 0.5859 7.9970 28 6 -1.8870 0.9268 6.6628 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 4.2484 4.5661 1.5522 35 1 2.9482 5.5105 0.7868 36 1 2.6462 4.6617 2.3218 37 1 2.9265 2.3919 3.1694 38 1 2.3467 0.7749 2.7030 39 1 0.2023 2.5960 2.4530 40 1 -4.2600 3.7672 4.0217 41 1 0.4217 3.3708 6.9349 42 1 0.2026 2.7691 9.3125 43 1 -1.3495 0.9824 9.9923 44 1 -2.6872 -0.1980 8.2952 45 1 -2.4734 0.4087 5.9183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361468904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:29 Heat of formation + Delta-G solvation = 12.878757 kcal Electronic energy + Delta-G solvation = -28037.925785 eV Core-core repulsion = 24215.223956 eV Total energy + Delta-G solvation = -3822.701828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.99599 -40.82372 -39.34598 -37.22047 -35.55898 -35.48185 -34.01366 -32.84984 -32.29671 -31.50378 -29.80692 -28.79377 -27.38127 -25.63722 -25.26358 -23.19327 -22.80864 -22.14350 -21.05935 -20.83201 -18.73917 -18.65039 -18.26374 -17.52997 -17.50074 -16.73612 -16.29547 -16.11536 -15.71009 -15.61913 -15.31736 -15.16147 -14.64429 -14.49704 -14.11399 -14.05835 -14.04014 -13.90749 -13.65757 -13.52547 -13.31789 -13.23106 -13.13320 -12.84369 -12.73708 -12.53855 -12.39294 -12.17298 -11.91114 -11.78537 -11.66176 -11.23565 -11.07367 -10.68351 -10.54426 -10.12755 -9.90669 -9.52562 -9.22385 -8.19697 -6.30751 0.38724 0.78930 0.83135 1.05593 1.41445 1.45715 1.54810 1.97193 2.09038 2.43474 2.69224 3.10202 3.10531 3.30916 3.44177 3.73439 3.87586 4.16033 4.24864 4.28657 4.32873 4.37185 4.37606 4.46421 4.55169 4.57008 4.65619 4.67389 4.74003 4.82727 4.90897 4.92481 4.97859 5.00604 5.08196 5.13779 5.17635 5.27335 5.39733 5.48138 5.62567 5.67326 5.81675 5.85945 5.97284 6.26330 6.43434 6.71866 6.78880 7.23068 7.36386 7.54286 8.88297 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.004193 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.123618 B = 6676.468510 C = 7647.048311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.036 3.964 4 N -0.391 5.391 5 O 0.087 5.913 6 C 0.004 3.996 7 C -0.079 4.079 8 C -0.232 4.232 9 C 0.209 3.791 10 N -0.713 5.713 11 C 0.531 3.469 12 O -0.588 6.588 13 C 0.053 3.947 14 H 0.064 0.936 15 C -0.512 4.512 16 H 0.058 0.942 17 C 0.033 3.967 18 N -0.905 5.905 19 Si 0.951 3.049 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.288 1.288 23 C -0.036 4.036 24 C -0.109 4.109 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.131 4.131 28 C -0.142 4.142 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.405 0.595 40 H 0.265 0.735 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 -1.953 -4.016 10.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.123 4.123 4 N -0.099 5.099 5 O 0.027 5.973 6 C -0.061 4.061 7 C -0.136 4.136 8 C -0.237 4.237 9 C 0.086 3.914 10 N -0.364 5.364 11 C 0.321 3.679 12 O -0.470 6.470 13 C 0.032 3.968 14 H 0.082 0.918 15 C -0.550 4.550 16 H 0.076 0.924 17 C -0.169 4.169 18 N -0.542 5.542 19 Si 0.776 3.224 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.214 1.214 23 C -0.037 4.037 24 C -0.127 4.127 25 C -0.153 4.153 26 C -0.163 4.163 27 C -0.149 4.149 28 C -0.161 4.161 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.240 0.760 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.358 -2.494 -4.874 10.842 hybrid contribution -0.892 1.042 0.057 1.373 sum 8.466 -1.453 -4.818 9.849 Atomic orbital electron populations 1.21691 0.93712 1.03226 1.01532 1.20051 0.96514 0.87198 1.04589 1.23794 1.00425 0.99924 0.88165 1.73817 1.18358 0.93225 1.24485 1.84779 1.62658 1.26848 1.23053 1.24897 0.98958 0.98942 0.83308 1.20605 1.03826 0.90703 0.98470 1.20915 1.11094 0.94911 0.96759 1.19234 0.85009 1.00640 0.86555 1.45898 1.14865 1.64125 1.11559 1.21322 0.90345 0.75114 0.81159 1.90562 1.54312 1.45996 1.56089 1.17995 0.90116 0.98116 0.90584 0.91834 1.20800 0.95655 0.89848 1.48655 0.92405 1.25594 0.95616 1.01441 0.94269 1.70027 1.00501 1.36316 1.47392 0.85608 0.78425 0.80659 0.77678 1.18587 1.20313 1.21447 1.20110 0.94036 0.92857 0.96701 1.20854 0.99109 0.99345 0.93432 1.21329 0.99811 0.98694 0.95485 1.21263 0.97659 0.97271 1.00067 1.21287 1.00279 1.00748 0.92555 1.21123 0.99775 0.98285 0.96882 0.93122 0.89855 0.93614 0.88954 0.88739 0.86848 0.87977 0.89152 0.90373 0.90873 0.75988 0.92561 0.88365 0.84649 0.83694 0.84471 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.89 71.98 0.71 -2.67 16 2 C -0.05 -1.03 6.44 29.85 0.19 -0.84 16 3 C 0.04 0.99 6.58 43.58 0.29 1.27 16 4 N -0.39 -11.37 12.07 -49.55 -0.60 -11.97 16 5 O 0.09 2.35 11.20 71.70 0.80 3.15 16 6 C 0.00 0.09 7.49 25.04 0.19 0.27 16 7 C -0.08 -1.34 10.24 71.24 0.73 -0.61 16 8 C -0.23 -6.17 5.69 -19.73 -0.11 -6.28 16 9 C 0.21 6.08 5.92 85.63 0.51 6.59 16 10 N -0.71 -25.19 5.45 -466.78 -2.54 -27.73 16 11 C 0.53 22.89 7.04 87.66 0.62 23.51 16 12 O -0.59 -27.61 15.42 -3.03 -0.05 -27.65 16 13 C 0.05 2.52 2.38 -13.03 -0.03 2.49 16 14 H 0.06 3.27 7.13 -2.39 -0.02 3.26 16 15 C -0.51 -25.18 7.47 25.60 0.19 -24.99 16 16 H 0.06 2.85 7.82 -2.91 -0.02 2.83 16 17 C 0.03 1.63 5.45 84.65 0.46 2.10 16 18 N -0.91 -48.00 12.84 21.45 0.28 -47.72 16 19 Si 0.95 40.08 29.54 68.60 2.03 42.10 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 23 C -0.04 -1.69 4.30 -19.87 -0.09 -1.77 16 24 C -0.11 -4.82 8.31 22.27 0.18 -4.64 16 25 C -0.14 -5.01 10.05 22.27 0.22 -4.78 16 26 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 27 C -0.13 -4.77 10.05 22.27 0.22 -4.55 16 28 C -0.14 -6.21 9.67 22.27 0.22 -5.99 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.09 1.98 7.65 -2.39 -0.02 1.96 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 37 H 0.08 2.21 8.08 -2.39 -0.02 2.20 16 38 H 0.07 2.13 7.65 -2.39 -0.02 2.12 16 39 H 0.41 14.46 8.35 -92.70 -0.77 13.69 16 40 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 41 H 0.10 4.44 7.89 -2.91 -0.02 4.42 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 45 H 0.10 4.54 7.96 -2.91 -0.02 4.52 16 Total: -1.00 -62.75 386.76 4.87 -57.87 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.23 Total: 37.53 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 4.73 Total: -25.59 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.87 Total: -87.42 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.76 Total: -24.51 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.10 kcal Total: -62.75 4.87 -57.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.753 kcal (2) G-P(sol) polarization free energy of solvation -62.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds