Wall clock time and date at job start Tue Mar 31 2020 16:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 C 1.50703 * 109.47208 * 239.99466 * 2 1 3 5 5 H 1.07993 * 120.00080 * 239.99664 * 4 2 1 6 6 C 1.37873 * 119.99637 * 60.00344 * 4 2 1 7 7 N 1.31515 * 120.00360 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46821 * 59.99750 * 8 6 4 10 10 H 1.48498 * 109.47435 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47285 * 300.00125 * 8 6 4 12 12 C 1.53006 * 109.47103 * 119.99486 * 2 1 3 13 13 N 1.46496 * 109.47004 * 300.00187 * 12 2 1 14 14 C 1.34780 * 119.99451 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00583 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99519 * 179.97438 * 14 13 12 17 17 C 1.50705 * 109.46936 * 180.02562 * 16 14 13 18 18 C 1.36323 * 120.05334 * 100.00232 * 17 16 14 19 19 C 1.40914 * 118.25907 * 179.97438 * 18 17 16 20 20 C 1.40368 * 121.29969 * 179.97438 * 19 18 17 21 21 C 1.36185 * 119.63389 * 180.02562 * 20 19 18 22 22 C 1.39308 * 120.85875 * 359.70832 * 21 20 19 23 23 C 1.36116 * 121.03966 * 0.58155 * 22 21 20 24 24 C 1.40552 * 119.75752 * 359.44484 * 23 22 21 25 25 N 1.33763 * 121.00089 * 180.22939 * 24 23 22 26 26 C 1.31556 * 121.26451 * 179.97438 * 25 24 23 27 27 O 1.35579 * 119.20586 * 180.02562 * 26 25 24 28 28 H 1.08997 * 109.46992 * 300.00303 * 1 2 3 29 29 H 1.09001 * 109.47234 * 60.00295 * 1 2 3 30 30 H 1.09006 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47388 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46675 * 299.99414 * 3 2 1 33 33 H 1.08993 * 109.47452 * 59.99468 * 3 2 1 34 34 H 0.97000 * 120.00322 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47319 * 179.97438 * 12 2 1 36 36 H 1.08997 * 109.46860 * 60.00140 * 12 2 1 37 37 H 0.96998 * 120.00166 * 0.02562 * 13 12 2 38 38 H 1.08998 * 109.47110 * 60.00143 * 16 14 13 39 39 H 1.08997 * 109.47341 * 300.00130 * 16 14 13 40 40 H 1.08002 * 120.87705 * 359.95385 * 18 17 16 41 41 H 1.08004 * 120.18165 * 0.04860 * 20 19 18 42 42 H 1.08005 * 119.56980 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.48042 * 180.30625 * 22 21 20 44 44 H 1.08002 * 120.12395 * 179.72832 * 23 22 21 45 45 H 0.96701 * 113.99726 * 270.01784 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5201 -4.0079 10 1 1.8270 -0.4202 -5.2204 11 1 3.8075 -1.1193 -4.0076 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6695 15 8 2.5741 -1.4773 3.7809 16 6 1.3749 0.2196 4.9000 17 6 1.8772 -0.4908 6.1305 18 6 2.9572 -0.0054 6.8060 19 6 3.3944 -0.6992 7.9520 20 6 4.4998 -0.2563 8.6951 21 6 4.8934 -0.9533 9.7969 22 6 4.2095 -2.0979 10.2004 23 6 3.1373 -2.5584 9.4996 24 6 2.7013 -1.8662 8.3567 25 7 1.6477 -2.2941 7.6523 26 6 1.2349 -1.6499 6.5820 27 8 0.1620 -2.1204 5.8995 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 0.7082 1.1607 -3.4844 35 1 3.1300 -0.7216 1.2492 36 1 1.6767 -1.7488 1.2494 37 1 0.9936 0.7579 2.3563 38 1 0.2849 0.2204 4.8999 39 1 1.7390 1.2470 4.9000 40 1 3.4648 0.8873 6.4716 41 1 5.0349 0.6326 8.3951 42 1 5.7438 -0.6113 10.3682 43 1 4.5379 -2.6308 11.0805 44 1 2.6206 -3.4499 9.8233 45 1 0.3859 -2.7487 5.1994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362998857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:45 Heat of formation + Delta-G solvation = -32.212136 kcal Electronic energy + Delta-G solvation = -27186.827229 eV Core-core repulsion = 23362.170113 eV Total energy + Delta-G solvation = -3824.657116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.23055 -39.43761 -38.32654 -36.45993 -35.97201 -34.18543 -33.35101 -31.85113 -30.85109 -29.87663 -28.00918 -25.77460 -25.59252 -24.84071 -24.05294 -22.94135 -22.30528 -20.22529 -19.17479 -18.85285 -18.14276 -17.31769 -16.84452 -16.20022 -15.78406 -15.42752 -15.22962 -14.89708 -14.70343 -14.51619 -14.37732 -13.88425 -13.52395 -13.35424 -13.25679 -13.03249 -12.87324 -12.24760 -12.13587 -12.10155 -11.67329 -11.57214 -11.51481 -11.38988 -11.23049 -10.88190 -10.76591 -10.68329 -10.43240 -10.24417 -9.69961 -9.68477 -9.60801 -9.32825 -8.84937 -8.70605 -8.52178 -8.43592 -8.37179 -6.05729 -4.16095 0.18692 0.56996 1.78853 2.56998 2.92142 3.27514 3.32100 3.35305 3.47414 3.66014 3.94152 4.25188 4.37454 4.41107 4.52342 4.63651 4.77047 4.87773 4.97573 5.13990 5.18718 5.21032 5.27864 5.40442 5.57630 5.74816 5.78423 5.82604 6.11855 6.16822 6.19102 6.24935 6.26452 6.45462 6.57513 6.70866 6.77342 6.87498 6.95158 6.96600 7.30267 7.36795 7.50989 7.65446 7.75050 7.96058 7.96593 8.10050 8.33937 8.58684 8.84305 9.49965 10.95585 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.002309 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.623839 B =12123.696150 C =12295.434318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.713 5.713 14 C 0.507 3.493 15 O -0.553 6.553 16 C -0.102 4.102 17 C -0.119 4.119 18 C -0.038 4.038 19 C -0.110 4.110 20 C -0.089 4.089 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.096 4.096 24 C 0.148 3.852 25 N -0.498 5.498 26 C 0.368 3.632 27 O -0.483 6.483 28 H 0.007 0.993 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.261 0.739 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.399 0.601 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 1.219 21.968 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.292 3.708 15 O -0.432 6.432 16 C -0.142 4.142 17 C -0.123 4.123 18 C -0.064 4.064 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.143 4.143 22 C -0.120 4.120 23 C -0.115 4.115 24 C 0.027 3.973 25 N -0.217 5.217 26 C 0.174 3.826 27 O -0.291 6.291 28 H 0.026 0.974 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.234 0.766 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.852 0.206 22.530 22.711 hybrid contribution 0.655 0.312 -1.617 1.773 sum 3.507 0.518 20.912 21.211 Atomic orbital electron populations 1.21836 0.97695 0.99217 1.00145 1.18354 0.92832 0.92738 0.90531 1.21837 0.98564 0.98368 1.00127 1.20934 1.31613 1.12142 0.89903 0.92533 1.24875 0.94831 0.94914 0.98855 1.69786 1.36533 1.22717 1.23385 0.86633 0.79235 0.79814 0.82179 1.20270 1.21302 1.20289 1.21730 0.98121 0.95796 0.83396 1.46318 1.52356 1.31791 1.05918 1.20343 0.80815 0.84975 0.84633 1.90690 1.38636 1.26865 1.86993 1.20623 1.03638 0.99961 0.89990 1.20098 0.96920 0.97648 0.97642 1.21274 0.93754 0.98802 0.92529 1.18810 0.98246 0.96854 0.97275 1.20977 0.95191 0.99746 0.94829 1.20897 1.00296 0.95804 0.97256 1.20888 0.95137 0.96342 0.99629 1.20791 0.97193 1.00053 0.93478 1.18545 0.91139 0.92642 0.94959 1.67533 1.13488 1.32745 1.07952 1.19082 0.85488 0.89287 0.88757 1.84612 1.28502 1.64854 1.51142 0.97440 0.89576 0.95418 0.95468 0.89562 0.97481 0.92908 0.92745 0.92694 0.76552 0.87016 0.87748 0.83845 0.85158 0.85537 0.85319 0.84743 0.73131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -13.00 8.01 -34.44 -0.28 -13.27 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.17 9.35 55.43 0.52 -22.65 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.65 16 13 N -0.71 -11.60 4.96 -60.29 -0.30 -11.90 16 14 C 0.51 7.87 7.82 -10.98 -0.09 7.79 16 15 O -0.55 -10.60 15.96 5.56 0.09 -10.51 16 16 C -0.10 -1.16 5.48 -29.03 -0.16 -1.32 16 17 C -0.12 -1.54 4.41 -104.65 -0.46 -2.00 16 18 C -0.04 -0.44 9.49 -39.26 -0.37 -0.81 16 19 C -0.11 -1.31 5.74 -106.78 -0.61 -1.92 16 20 C -0.09 -0.81 9.77 -39.52 -0.39 -1.20 16 21 C -0.12 -0.99 9.96 -39.92 -0.40 -1.39 16 22 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 23 C -0.10 -1.03 9.98 -39.47 -0.39 -1.43 16 24 C 0.15 1.99 6.60 -84.85 -0.56 1.43 16 25 N -0.50 -7.51 10.37 -11.05 -0.11 -7.62 16 26 C 0.37 5.30 7.60 -17.01 -0.13 5.18 16 27 O -0.48 -6.47 12.75 -18.43 -0.24 -6.71 16 28 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 29 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 34 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.40 5.79 6.16 -40.82 -0.25 5.54 16 38 H 0.11 1.14 7.84 -51.93 -0.41 0.73 16 39 H 0.10 0.91 8.00 -51.93 -0.42 0.50 16 40 H 0.14 1.24 8.04 -52.49 -0.42 0.81 16 41 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.41 4.59 9.06 45.56 0.41 5.00 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -30.95 371.19 -8.64 -39.59 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.35 Total: 8.59 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.82 Total: -9.82 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.10 Total: -42.17 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.15 Total: -17.21 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.95 -8.64 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362998857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.382 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds