Wall clock time and date at job start Tue Mar 31 2020 16:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 C 1.50703 * 109.47208 * 239.99466 * 2 1 3 5 5 H 1.07993 * 120.00080 * 239.99664 * 4 2 1 6 6 C 1.37873 * 119.99637 * 60.00344 * 4 2 1 7 7 N 1.31515 * 120.00360 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46821 * 59.99750 * 8 6 4 10 10 H 1.48498 * 109.47435 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47285 * 300.00125 * 8 6 4 12 12 C 1.53006 * 109.47103 * 119.99486 * 2 1 3 13 13 N 1.46496 * 109.47004 * 300.00187 * 12 2 1 14 14 C 1.34780 * 119.99451 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00583 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99519 * 179.97438 * 14 13 12 17 17 C 1.50705 * 109.46936 * 180.02562 * 16 14 13 18 18 C 1.36323 * 120.05334 * 100.00232 * 17 16 14 19 19 C 1.40914 * 118.25907 * 179.97438 * 18 17 16 20 20 C 1.40368 * 121.29969 * 179.97438 * 19 18 17 21 21 C 1.36185 * 119.63389 * 180.02562 * 20 19 18 22 22 C 1.39308 * 120.85875 * 359.70832 * 21 20 19 23 23 C 1.36116 * 121.03966 * 0.58155 * 22 21 20 24 24 C 1.40552 * 119.75752 * 359.44484 * 23 22 21 25 25 N 1.33763 * 121.00089 * 180.22939 * 24 23 22 26 26 C 1.31556 * 121.26451 * 179.97438 * 25 24 23 27 27 O 1.35579 * 119.20586 * 180.02562 * 26 25 24 28 28 H 1.08997 * 109.46992 * 300.00303 * 1 2 3 29 29 H 1.09001 * 109.47234 * 60.00295 * 1 2 3 30 30 H 1.09006 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47388 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46675 * 299.99414 * 3 2 1 33 33 H 1.08993 * 109.47452 * 59.99468 * 3 2 1 34 34 H 0.97000 * 120.00322 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47319 * 179.97438 * 12 2 1 36 36 H 1.08997 * 109.46860 * 60.00140 * 12 2 1 37 37 H 0.96998 * 120.00166 * 0.02562 * 13 12 2 38 38 H 1.08998 * 109.47110 * 60.00143 * 16 14 13 39 39 H 1.08997 * 109.47341 * 300.00130 * 16 14 13 40 40 H 1.08002 * 120.87705 * 359.95385 * 18 17 16 41 41 H 1.08004 * 120.18165 * 0.04860 * 20 19 18 42 42 H 1.08005 * 119.56980 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.48042 * 180.30625 * 22 21 20 44 44 H 1.08002 * 120.12395 * 179.72832 * 23 22 21 45 45 H 0.96701 * 113.99726 * 270.01784 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5201 -4.0079 10 1 1.8270 -0.4202 -5.2204 11 1 3.8075 -1.1193 -4.0076 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6695 15 8 2.5741 -1.4773 3.7809 16 6 1.3749 0.2196 4.9000 17 6 1.8772 -0.4908 6.1305 18 6 2.9572 -0.0054 6.8060 19 6 3.3944 -0.6992 7.9520 20 6 4.4998 -0.2563 8.6951 21 6 4.8934 -0.9533 9.7969 22 6 4.2095 -2.0979 10.2004 23 6 3.1373 -2.5584 9.4996 24 6 2.7013 -1.8662 8.3567 25 7 1.6477 -2.2941 7.6523 26 6 1.2349 -1.6499 6.5820 27 8 0.1620 -2.1204 5.8995 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 0.7082 1.1607 -3.4844 35 1 3.1300 -0.7216 1.2492 36 1 1.6767 -1.7488 1.2494 37 1 0.9936 0.7579 2.3563 38 1 0.2849 0.2204 4.8999 39 1 1.7390 1.2470 4.9000 40 1 3.4648 0.8873 6.4716 41 1 5.0349 0.6326 8.3951 42 1 5.7438 -0.6113 10.3682 43 1 4.5379 -2.6308 11.0805 44 1 2.6206 -3.4499 9.8233 45 1 0.3859 -2.7487 5.1994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362998857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:44 Heat of formation + Delta-G solvation = -53.980558 kcal Electronic energy + Delta-G solvation = -27187.771178 eV Core-core repulsion = 23362.170113 eV Total energy + Delta-G solvation = -3825.601066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.10752 -40.67394 -39.26882 -38.09153 -36.84597 -35.09857 -34.97090 -32.97002 -32.34366 -30.66019 -29.01783 -27.53589 -27.37918 -26.41813 -24.95032 -23.87806 -23.08115 -21.51043 -20.58513 -20.06478 -18.99814 -18.51277 -17.90186 -17.56930 -17.11802 -16.66336 -16.43206 -16.33029 -15.93678 -15.45379 -15.19511 -14.89097 -14.79267 -14.64898 -14.53703 -14.29304 -13.99770 -13.88590 -13.25946 -13.06965 -13.01832 -12.97781 -12.64638 -12.62977 -12.44138 -12.34378 -12.29158 -12.22193 -12.13195 -11.56124 -11.46137 -11.25953 -10.85269 -10.67584 -10.52248 -10.38753 -9.91366 -9.56538 -9.21315 -8.01795 -6.17330 -0.61117 -0.27177 0.98368 1.43414 1.45141 1.51196 1.70543 1.75992 2.37620 2.52992 2.60769 3.08705 3.21762 3.40229 3.65237 3.69298 3.88659 3.94650 4.10355 4.22030 4.34660 4.42320 4.44990 4.48174 4.54794 4.64102 4.74597 4.80620 4.98420 5.01114 5.03663 5.08750 5.09023 5.13612 5.22295 5.39256 5.40473 5.45596 5.50405 5.61928 5.68090 5.69779 5.89957 6.18113 6.24064 6.42053 6.44841 6.70189 6.83656 6.87165 7.34438 7.50346 8.96569 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.002309 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.623839 B =12123.696150 C =12295.434318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.591 6.591 16 C -0.087 4.087 17 C -0.140 4.140 18 C -0.033 4.033 19 C -0.129 4.129 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.086 4.086 23 C -0.124 4.124 24 C 0.118 3.882 25 N -0.532 5.532 26 C 0.344 3.656 27 O -0.490 6.490 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.260 0.740 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.411 0.589 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.176 0.824 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.134 0.866 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 2.888 23.962 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.359 5.359 14 C 0.298 3.702 15 O -0.473 6.473 16 C -0.126 4.126 17 C -0.144 4.144 18 C -0.058 4.058 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.138 4.138 22 C -0.105 4.105 23 C -0.143 4.143 24 C -0.003 4.003 25 N -0.251 5.251 26 C 0.151 3.849 27 O -0.299 6.299 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.248 0.752 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.193 0.807 41 H 0.177 0.823 42 H 0.180 0.820 43 H 0.179 0.821 44 H 0.152 0.848 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 4.097 1.895 24.537 24.948 hybrid contribution 0.362 -0.254 -2.086 2.132 sum 4.459 1.641 22.451 22.948 Atomic orbital electron populations 1.21680 0.97104 0.98639 1.00525 1.18352 0.93235 0.93092 0.90278 1.21676 0.97903 0.97783 1.00570 1.21254 1.31691 1.12136 0.91700 0.93918 1.25427 0.95200 0.95606 1.00885 1.69893 1.36898 1.23238 1.23623 0.85870 0.78628 0.78822 0.79793 1.20401 1.20839 1.20298 1.21220 0.96873 0.95013 0.84326 1.46110 1.52645 1.32006 1.05130 1.21035 0.79637 0.84319 0.85222 1.90680 1.40373 1.28702 1.87501 1.20595 1.04403 1.00834 0.86814 1.20198 0.97839 0.97721 0.98612 1.21708 0.92885 0.99338 0.91894 1.19126 0.99243 0.96655 0.98035 1.21361 0.94278 1.00728 0.94707 1.21379 1.00677 0.94927 0.96794 1.21325 0.93438 0.96132 0.99630 1.20987 0.98785 1.00721 0.93788 1.19023 0.91344 0.94004 0.95881 1.67475 1.14822 1.33987 1.08842 1.19394 0.86133 0.90280 0.89137 1.84579 1.28908 1.65085 1.51346 0.94089 0.92037 0.96436 0.96341 0.92048 0.93994 0.93042 0.94506 0.94500 0.75173 0.85556 0.84082 0.80699 0.82305 0.81969 0.82144 0.84769 0.72769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 2 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 3 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 4 C -0.53 -27.52 8.01 25.60 0.21 -27.32 16 5 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 6 C 0.03 1.49 5.15 84.65 0.44 1.93 16 7 N -0.90 -47.19 9.35 21.45 0.20 -46.99 16 8 Si 0.94 42.23 29.54 68.60 2.03 44.26 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.05 4.50 86.38 0.39 6.44 16 13 N -0.71 -21.90 4.96 -463.06 -2.30 -24.20 16 14 C 0.51 15.20 7.82 87.66 0.69 15.88 16 15 O -0.59 -22.72 15.96 -3.03 -0.05 -22.77 16 16 C -0.09 -1.78 5.48 29.10 0.16 -1.62 16 17 C -0.14 -3.46 4.41 -19.88 -0.09 -3.55 16 18 C -0.03 -0.70 9.49 22.48 0.21 -0.49 16 19 C -0.13 -2.88 5.74 -21.27 -0.12 -3.01 16 20 C -0.09 -1.40 9.77 22.31 0.22 -1.18 16 21 C -0.12 -1.46 9.96 22.05 0.22 -1.24 16 22 C -0.09 -1.20 9.94 22.03 0.22 -0.98 16 23 C -0.12 -2.62 9.98 22.34 0.22 -2.39 16 24 C 0.12 3.18 6.60 40.25 0.27 3.45 16 25 N -0.53 -16.68 10.37 -302.14 -3.13 -19.81 16 26 C 0.34 10.15 7.60 85.16 0.65 10.80 16 27 O -0.49 -13.65 12.75 -88.87 -1.13 -14.78 16 28 H 0.04 1.43 6.86 -2.39 -0.02 1.42 16 29 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 30 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 33 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 34 H 0.26 13.24 8.31 -92.71 -0.77 12.46 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.41 10.74 6.16 -92.71 -0.57 10.17 16 38 H 0.13 2.27 7.84 -2.39 -0.02 2.25 16 39 H 0.14 1.87 8.00 -2.39 -0.02 1.85 16 40 H 0.18 2.37 8.04 -2.91 -0.02 2.35 16 41 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 43 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.41 9.96 9.06 -74.06 -0.67 9.29 16 Total: -1.00 -69.93 371.19 0.21 -69.71 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.21 Total: 24.81 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.81 Total: -10.23 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -5.23 Total: -91.00 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.18 Total: -37.56 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.93 0.21 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362998857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.732 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds