Wall clock time and date at job start Tue Mar 31 2020 16:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.50707 * 109.46824 * 239.99585 * 2 1 3 5 5 H 1.08001 * 119.99707 * 239.99955 * 4 2 1 6 6 C 1.37869 * 119.99733 * 60.00304 * 4 2 1 7 7 N 1.31511 * 120.00576 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47180 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46929 * 120.00123 * 8 6 4 11 11 H 1.48501 * 109.47286 * 240.00441 * 8 6 4 12 12 C 1.52999 * 109.46946 * 119.99864 * 2 1 3 13 13 N 1.46494 * 109.47083 * 300.00076 * 12 2 1 14 14 C 1.34786 * 120.00060 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99484 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00060 * 179.97438 * 14 13 12 17 17 C 1.50695 * 109.47019 * 180.02562 * 16 14 13 18 18 C 1.36081 * 119.01793 * 125.00230 * 17 16 14 19 19 C 1.40808 * 118.81106 * 179.97438 * 18 17 16 20 20 C 1.40190 * 122.18918 * 180.02562 * 19 18 17 21 21 C 1.36262 * 119.48068 * 179.97438 * 20 19 18 22 22 C 1.39312 * 120.98264 * 0.02562 * 21 20 19 23 23 C 1.36263 * 121.05723 * 359.97438 * 22 21 20 24 24 C 1.40164 * 119.52784 * 0.27741 * 23 22 21 25 25 C 1.41066 * 122.05628 * 180.29010 * 24 23 22 26 26 O 1.35488 * 120.12731 * 359.44938 * 25 24 23 27 27 N 1.31768 * 119.74788 * 179.70086 * 25 24 23 28 28 H 1.08999 * 109.47117 * 300.00462 * 1 2 3 29 29 H 1.09005 * 109.46784 * 60.00302 * 1 2 3 30 30 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47014 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47059 * 299.99530 * 3 2 1 33 33 H 1.08996 * 109.47026 * 59.99876 * 3 2 1 34 34 H 0.96996 * 120.00434 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47288 * 179.97438 * 12 2 1 36 36 H 1.09007 * 109.47060 * 59.99976 * 12 2 1 37 37 H 0.97002 * 120.00552 * 359.97438 * 13 12 2 38 38 H 1.08994 * 109.47198 * 59.99464 * 16 14 13 39 39 H 1.09006 * 109.46887 * 300.00270 * 16 14 13 40 40 H 1.07997 * 120.59319 * 359.97126 * 18 17 16 41 41 H 1.08001 * 120.26072 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.51192 * 179.97438 * 21 20 19 43 43 H 1.07999 * 119.46947 * 179.97438 * 22 21 20 44 44 H 1.08002 * 120.23206 * 179.97438 * 23 22 21 45 45 H 0.96704 * 113.99931 * 270.25296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 3.1473 -2.2867 -3.6038 10 1 1.1676 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4453 14 6 1.8777 -0.4908 3.6696 15 8 2.5749 -1.4768 3.7808 16 6 1.3758 0.2200 4.9000 17 6 1.8790 -0.4897 6.1304 18 6 2.5734 0.2176 7.0628 19 6 3.0411 -0.4498 8.2111 20 6 3.7629 0.2094 9.2160 21 6 4.1889 -0.4906 10.3047 22 6 3.9181 -1.8511 10.4335 23 6 3.2192 -2.5225 9.4756 24 6 2.7700 -1.8358 8.3394 25 6 2.0371 -2.4765 7.3184 26 8 1.7554 -3.7985 7.4106 27 7 1.6319 -1.7853 6.2722 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 0.7090 1.1612 -3.4844 35 1 3.1300 -0.7217 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.9943 0.7583 2.3564 38 1 0.2858 0.2202 4.9003 39 1 1.7391 1.2477 4.8995 40 1 2.7624 1.2718 6.9245 41 1 3.9797 1.2637 9.1279 42 1 4.7453 0.0166 11.0789 43 1 4.2678 -2.3821 11.3065 44 1 3.0172 -3.5774 9.5889 45 1 2.4284 -4.3723 7.0194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413065211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:42 Heat of formation + Delta-G solvation = -29.080818 kcal Electronic energy + Delta-G solvation = -26978.769858 eV Core-core repulsion = 23154.248527 eV Total energy + Delta-G solvation = -3824.521332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.24169 -39.24765 -38.04535 -37.19789 -36.18895 -33.22448 -32.55846 -32.02703 -31.08129 -30.58978 -27.80574 -25.70896 -25.52137 -24.75006 -24.30331 -22.87888 -22.33053 -20.13097 -18.90400 -18.69029 -18.07523 -17.40608 -16.75890 -16.27961 -15.75062 -15.42460 -15.26435 -15.02257 -14.67576 -14.51306 -14.20418 -13.81594 -13.68768 -13.22129 -13.10354 -12.91293 -12.77116 -12.29087 -12.18887 -12.06651 -11.83721 -11.65197 -11.44276 -11.31708 -11.18536 -10.85630 -10.65134 -10.36602 -10.26347 -10.19018 -9.61544 -9.55489 -9.44456 -9.30864 -9.17446 -8.76098 -8.42634 -8.26469 -8.13418 -6.01106 -4.10852 0.11460 0.65592 1.63332 2.74369 3.14233 3.27772 3.35602 3.36349 3.41097 3.71605 3.92861 4.24361 4.38026 4.41585 4.53080 4.60072 4.81798 4.87648 4.96765 5.17712 5.25707 5.27378 5.32561 5.41817 5.51231 5.60990 5.76660 5.77196 6.10484 6.13442 6.24782 6.30556 6.36597 6.52879 6.53823 6.81786 6.84424 6.96130 7.04200 7.08752 7.31789 7.37992 7.57410 7.70935 7.90409 8.02830 8.10012 8.19178 8.40476 8.78751 8.90560 9.54920 11.00321 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027043 B = 0.002234 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.121053 B =12528.322232 C =12901.127072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.134 3.866 13 N -0.719 5.719 14 C 0.511 3.489 15 O -0.537 6.537 16 C -0.098 4.098 17 C 0.161 3.839 18 C -0.167 4.167 19 C -0.009 4.009 20 C -0.114 4.114 21 C -0.097 4.097 22 C -0.129 4.129 23 C -0.076 4.076 24 C -0.126 4.126 25 C 0.356 3.644 26 O -0.477 6.477 27 N -0.473 5.473 28 H 0.007 0.993 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.007 0.993 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.397 0.603 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 0.627 24.936 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.012 3.988 13 N -0.371 5.371 14 C 0.295 3.705 15 O -0.414 6.414 16 C -0.139 4.139 17 C 0.036 3.964 18 C -0.187 4.187 19 C -0.014 4.014 20 C -0.132 4.132 21 C -0.116 4.116 22 C -0.147 4.147 23 C -0.096 4.096 24 C -0.129 4.129 25 C 0.162 3.838 26 O -0.285 6.285 27 N -0.191 5.191 28 H 0.026 0.974 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.232 0.768 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.152 0.848 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.868 -0.154 24.417 24.586 hybrid contribution 0.860 0.099 -0.558 1.030 sum 3.728 -0.055 23.860 24.149 Atomic orbital electron populations 1.21827 0.97734 0.99211 1.00065 1.18368 0.92826 0.92753 0.90629 1.21825 0.98533 0.98377 1.00079 1.21029 1.31291 1.12015 0.89901 0.92439 1.24881 0.94906 0.94945 0.98853 1.69809 1.36813 1.22793 1.23081 0.86527 0.78644 0.79754 0.83024 1.19782 1.21065 1.21080 1.21670 0.97948 0.95790 0.83402 1.46273 1.52988 1.31910 1.05901 1.20091 0.81158 0.84894 0.84326 1.90679 1.38005 1.25989 1.86684 1.20724 1.03399 0.99491 0.90237 1.19751 0.94232 0.88093 0.94325 1.21653 1.01294 1.01315 0.94420 1.18031 0.96466 0.92066 0.94840 1.20949 0.98428 1.00207 0.93639 1.20992 0.98503 0.94442 0.97657 1.20913 0.99562 0.94713 0.99525 1.20940 0.96070 1.00252 0.92328 1.18996 1.01579 0.94538 0.97816 1.19225 0.90666 0.85641 0.88229 1.84652 1.50826 1.12377 1.80641 1.66729 1.20964 1.08871 1.22518 0.97434 0.89644 0.95444 0.95499 0.89625 0.97449 0.93087 0.92937 0.92833 0.76808 0.87107 0.87339 0.84011 0.84916 0.85564 0.85600 0.84775 0.73640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.05 1.28 0.50 -155.65 -0.08 1.20 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.50 -13.28 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 8 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.13 2.89 4.50 -4.05 -0.02 2.87 16 13 N -0.72 -12.75 4.96 -60.29 -0.30 -13.05 16 14 C 0.51 8.93 7.76 -10.98 -0.09 8.84 16 15 O -0.54 -11.54 15.31 5.56 0.09 -11.45 16 16 C -0.10 -1.24 6.07 -29.04 -0.18 -1.41 16 17 C 0.16 2.26 5.72 -83.01 -0.48 1.78 16 18 C -0.17 -1.91 9.44 -39.39 -0.37 -2.28 16 19 C -0.01 -0.10 5.75 -106.83 -0.61 -0.72 16 20 C -0.11 -0.98 9.81 -39.56 -0.39 -1.37 16 21 C -0.10 -0.71 9.95 -39.89 -0.40 -1.11 16 22 C -0.13 -0.98 9.95 -39.89 -0.40 -1.38 16 23 C -0.08 -0.70 9.59 -39.57 -0.38 -1.08 16 24 C -0.13 -1.50 5.75 -106.74 -0.61 -2.11 16 25 C 0.36 4.92 7.82 -16.51 -0.13 4.79 16 26 O -0.48 -5.60 12.86 -18.15 -0.23 -5.83 16 27 N -0.47 -7.60 9.14 -9.46 -0.09 -7.69 16 28 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 29 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 33 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 34 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.40 6.20 6.16 -40.82 -0.25 5.95 16 38 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.11 0.99 7.81 -51.93 -0.41 0.59 16 40 H 0.14 1.17 7.89 -52.49 -0.41 0.75 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.13 0.99 7.68 -52.49 -0.40 0.59 16 45 H 0.40 3.00 9.06 45.56 0.41 3.41 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -33.29 369.81 -8.68 -41.97 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.33 Total: 6.97 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.89 Total: -9.17 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.13 Total: -43.88 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.15 Total: -17.29 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.29 -8.68 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413065211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.890 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds