Wall clock time and date at job start Tue Mar 31 2020 16:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.50707 * 109.46824 * 239.99585 * 2 1 3 5 5 H 1.08001 * 119.99707 * 239.99955 * 4 2 1 6 6 C 1.37869 * 119.99733 * 60.00304 * 4 2 1 7 7 N 1.31511 * 120.00576 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47180 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46929 * 120.00123 * 8 6 4 11 11 H 1.48501 * 109.47286 * 240.00441 * 8 6 4 12 12 C 1.52999 * 109.46946 * 119.99864 * 2 1 3 13 13 N 1.46494 * 109.47083 * 300.00076 * 12 2 1 14 14 C 1.34786 * 120.00060 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99484 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00060 * 179.97438 * 14 13 12 17 17 C 1.50695 * 109.47019 * 180.02562 * 16 14 13 18 18 C 1.36081 * 119.01793 * 125.00230 * 17 16 14 19 19 C 1.40808 * 118.81106 * 179.97438 * 18 17 16 20 20 C 1.40190 * 122.18918 * 180.02562 * 19 18 17 21 21 C 1.36262 * 119.48068 * 179.97438 * 20 19 18 22 22 C 1.39312 * 120.98264 * 0.02562 * 21 20 19 23 23 C 1.36263 * 121.05723 * 359.97438 * 22 21 20 24 24 C 1.40164 * 119.52784 * 0.27741 * 23 22 21 25 25 C 1.41066 * 122.05628 * 180.29010 * 24 23 22 26 26 O 1.35488 * 120.12731 * 359.44938 * 25 24 23 27 27 N 1.31768 * 119.74788 * 179.70086 * 25 24 23 28 28 H 1.08999 * 109.47117 * 300.00462 * 1 2 3 29 29 H 1.09005 * 109.46784 * 60.00302 * 1 2 3 30 30 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47014 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47059 * 299.99530 * 3 2 1 33 33 H 1.08996 * 109.47026 * 59.99876 * 3 2 1 34 34 H 0.96996 * 120.00434 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47288 * 179.97438 * 12 2 1 36 36 H 1.09007 * 109.47060 * 59.99976 * 12 2 1 37 37 H 0.97002 * 120.00552 * 359.97438 * 13 12 2 38 38 H 1.08994 * 109.47198 * 59.99464 * 16 14 13 39 39 H 1.09006 * 109.46887 * 300.00270 * 16 14 13 40 40 H 1.07997 * 120.59319 * 359.97126 * 18 17 16 41 41 H 1.08001 * 120.26072 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.51192 * 179.97438 * 21 20 19 43 43 H 1.07999 * 119.46947 * 179.97438 * 22 21 20 44 44 H 1.08002 * 120.23206 * 179.97438 * 23 22 21 45 45 H 0.96704 * 113.99931 * 270.25296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 3.1473 -2.2867 -3.6038 10 1 1.1676 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4453 14 6 1.8777 -0.4908 3.6696 15 8 2.5749 -1.4768 3.7808 16 6 1.3758 0.2200 4.9000 17 6 1.8790 -0.4897 6.1304 18 6 2.5734 0.2176 7.0628 19 6 3.0411 -0.4498 8.2111 20 6 3.7629 0.2094 9.2160 21 6 4.1889 -0.4906 10.3047 22 6 3.9181 -1.8511 10.4335 23 6 3.2192 -2.5225 9.4756 24 6 2.7700 -1.8358 8.3394 25 6 2.0371 -2.4765 7.3184 26 8 1.7554 -3.7985 7.4106 27 7 1.6319 -1.7853 6.2722 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 0.7090 1.1612 -3.4844 35 1 3.1300 -0.7217 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.9943 0.7583 2.3564 38 1 0.2858 0.2202 4.9003 39 1 1.7391 1.2477 4.8995 40 1 2.7624 1.2718 6.9245 41 1 3.9797 1.2637 9.1279 42 1 4.7453 0.0166 11.0789 43 1 4.2678 -2.3821 11.3065 44 1 3.0172 -3.5774 9.5889 45 1 2.4284 -4.3723 7.0194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413065211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:41 Heat of formation + Delta-G solvation = -52.865938 kcal Electronic energy + Delta-G solvation = -26979.801259 eV Core-core repulsion = 23154.248527 eV Total energy + Delta-G solvation = -3825.552732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06144 -40.62805 -38.82318 -38.35323 -37.69280 -34.94437 -33.42064 -33.02696 -32.47151 -31.62923 -28.80283 -27.54586 -27.38834 -26.40841 -25.08464 -23.81630 -23.06938 -21.50943 -20.58817 -19.69856 -18.90529 -18.38851 -18.00013 -17.57837 -17.12904 -16.64225 -16.45176 -16.33830 -16.17248 -15.44244 -15.07248 -14.92588 -14.83271 -14.50621 -14.45289 -14.31544 -13.97061 -13.68382 -13.38167 -13.13808 -13.09026 -12.82017 -12.70649 -12.64636 -12.57842 -12.50337 -12.22831 -12.14255 -12.06852 -11.47286 -11.25772 -11.03950 -10.80373 -10.66302 -10.39906 -10.35030 -10.04237 -9.87872 -8.90199 -8.02651 -6.18102 -0.64366 -0.10660 0.89992 1.40053 1.44110 1.53576 1.79788 1.94522 2.39490 2.54506 2.56913 3.06052 3.20594 3.41029 3.65066 3.81077 3.94733 3.98842 4.19230 4.25363 4.35550 4.46538 4.47856 4.49617 4.54260 4.62281 4.73528 4.78089 4.91255 5.00890 5.04921 5.07912 5.10420 5.14396 5.21225 5.39654 5.45768 5.48628 5.55313 5.64282 5.67366 5.68726 5.92419 6.16810 6.22947 6.44319 6.53863 6.75506 6.86115 7.02430 7.43007 7.49419 8.96304 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027043 B = 0.002234 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.121053 B =12528.322232 C =12901.127072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.041 0.959 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.152 3.848 13 N -0.712 5.712 14 C 0.508 3.492 15 O -0.582 6.582 16 C -0.085 4.085 17 C 0.122 3.878 18 C -0.154 4.154 19 C -0.033 4.033 20 C -0.117 4.117 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.139 4.139 25 C 0.333 3.667 26 O -0.487 6.487 27 N -0.519 5.519 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.014 0.986 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.410 0.590 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.144 0.856 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 2.517 27.539 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.059 0.941 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.028 3.972 13 N -0.365 5.365 14 C 0.295 3.705 15 O -0.461 6.461 16 C -0.125 4.125 17 C -0.002 4.002 18 C -0.173 4.173 19 C -0.038 4.038 20 C -0.135 4.135 21 C -0.113 4.113 22 C -0.136 4.136 23 C -0.115 4.115 24 C -0.143 4.143 25 C 0.140 3.860 26 O -0.296 6.296 27 N -0.238 5.238 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.248 0.752 38 H 0.145 0.855 39 H 0.168 0.832 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.161 0.839 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 3.560 1.758 27.029 27.319 hybrid contribution 0.715 -0.527 -1.215 1.505 sum 4.275 1.231 25.814 26.194 Atomic orbital electron populations 1.21674 0.97132 0.98509 1.00544 1.18369 0.93236 0.93229 0.90184 1.21660 0.97897 0.97598 1.00615 1.21296 1.31588 1.12030 0.91728 0.94113 1.25441 0.95200 0.95641 1.00911 1.69904 1.37009 1.23229 1.23538 0.85724 0.78143 0.78715 0.80314 1.20243 1.20704 1.20522 1.21170 0.96691 0.94782 0.84567 1.46090 1.53190 1.32111 1.05082 1.20994 0.79961 0.84321 0.85244 1.90659 1.40017 1.28136 1.87336 1.20764 1.04281 1.00578 0.86896 1.20022 0.96474 0.88000 0.95732 1.22011 0.99121 1.02652 0.93522 1.18404 0.97468 0.92064 0.95874 1.21300 0.97569 1.01570 0.93035 1.21460 0.97589 0.94347 0.97890 1.21355 0.97578 0.95163 0.99536 1.21141 0.97068 1.01011 0.92248 1.19198 1.01632 0.95334 0.98116 1.19511 0.91691 0.86009 0.88812 1.84600 1.51805 1.12346 1.80870 1.66630 1.22680 1.10428 1.24065 0.94133 0.91836 0.96695 0.96340 0.91909 0.93953 0.93001 0.94724 0.95240 0.75244 0.85513 0.83166 0.80672 0.82243 0.82166 0.82641 0.83861 0.72225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 2 C 0.05 2.36 0.50 -52.92 -0.03 2.34 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.47 8.01 25.60 0.21 -28.26 16 5 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 6 C 0.03 1.48 5.15 84.65 0.44 1.92 16 7 N -0.90 -48.13 9.35 21.44 0.20 -47.93 16 8 Si 0.94 43.22 29.54 68.60 2.03 45.24 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.67 4.50 86.38 0.39 7.06 16 13 N -0.71 -24.69 4.96 -463.05 -2.30 -26.99 16 14 C 0.51 17.57 7.76 87.66 0.68 18.25 16 15 O -0.58 -25.78 15.31 -3.03 -0.05 -25.83 16 16 C -0.09 -2.00 6.07 29.10 0.18 -1.82 16 17 C 0.12 3.35 5.72 41.93 0.24 3.59 16 18 C -0.15 -3.22 9.44 22.40 0.21 -3.01 16 19 C -0.03 -0.70 5.75 -21.29 -0.12 -0.82 16 20 C -0.12 -1.61 9.81 22.28 0.22 -1.39 16 21 C -0.09 -1.01 9.95 22.07 0.22 -0.79 16 22 C -0.12 -1.43 9.95 22.07 0.22 -1.21 16 23 C -0.10 -1.64 9.59 22.28 0.21 -1.43 16 24 C -0.14 -3.29 5.75 -21.24 -0.12 -3.41 16 25 C 0.33 9.59 7.82 85.40 0.67 10.25 16 26 O -0.49 -12.19 12.86 -87.88 -1.13 -13.32 16 27 N -0.52 -17.24 9.14 -297.07 -2.72 -19.96 16 28 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 29 H 0.06 3.16 6.07 -2.38 -0.01 3.15 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 3.08 6.07 -2.38 -0.01 3.07 16 33 H 0.04 1.52 6.86 -2.39 -0.02 1.50 16 34 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 35 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.41 11.86 6.16 -92.71 -0.57 11.29 16 38 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.15 2.17 7.81 -2.38 -0.02 2.15 16 40 H 0.18 2.22 7.89 -2.91 -0.02 2.20 16 41 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.14 2.05 7.68 -2.91 -0.02 2.03 16 45 H 0.42 6.98 9.06 -74.05 -0.67 6.31 16 Total: -1.00 -75.77 369.81 0.60 -75.17 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.21 Total: 21.90 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 4.77 Total: -8.29 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -4.81 Total: -94.87 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.18 Total: -39.15 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -75.77 0.60 -75.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413065211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.301 kcal (2) G-P(sol) polarization free energy of solvation -75.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds