Wall clock time and date at job start Tue Mar 31 2020 15:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47313 * 2 1 4 4 N 1.30259 * 125.61990 * 90.01958 * 3 2 1 5 5 C 1.34478 * 108.70207 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.16667 * 180.02562 * 5 4 3 7 7 C 1.34329 * 107.66747 * 0.02562 * 5 4 3 8 8 C 1.50703 * 126.44139 * 179.74103 * 7 5 4 9 9 N 1.46497 * 109.46994 * 89.99969 * 8 7 5 10 10 C 1.34781 * 119.99949 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99782 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.00093 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.47313 * 300.00011 * 12 10 9 14 14 C 1.50709 * 109.47079 * 59.99989 * 12 10 9 15 15 H 1.08001 * 119.99544 * 33.93858 * 14 12 10 16 16 C 1.37874 * 119.99814 * 213.93659 * 14 12 10 17 17 N 1.31517 * 120.00134 * 6.39754 * 16 14 12 18 18 Si 1.86797 * 119.99699 * 186.38924 * 16 14 12 19 19 H 1.48504 * 109.47396 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47128 * 120.00147 * 18 16 14 21 21 H 1.48500 * 109.47230 * 240.00260 * 18 16 14 22 22 C 1.50695 * 109.47157 * 179.97438 * 12 10 9 23 23 C 1.38239 * 120.00128 * 293.85154 * 22 12 10 24 24 C 1.38232 * 119.99825 * 179.80665 * 23 22 12 25 25 C 1.38235 * 120.00232 * 0.40088 * 24 23 22 26 26 C 1.38241 * 119.99980 * 359.84876 * 25 24 23 27 27 C 1.38233 * 119.99604 * 359.96306 * 26 25 24 28 28 O 1.33965 * 125.61917 * 270.00494 * 3 2 1 29 29 H 1.08996 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47316 * 300.00457 * 1 2 3 31 31 H 1.09004 * 109.46841 * 59.99925 * 1 2 3 32 32 H 1.08996 * 109.47552 * 239.99979 * 2 1 3 33 33 H 1.09001 * 109.47049 * 119.99588 * 2 1 3 34 34 H 1.09001 * 109.46873 * 269.99953 * 6 5 4 35 35 H 1.09004 * 109.46929 * 29.98895 * 6 5 4 36 36 H 1.08994 * 109.47287 * 149.99779 * 6 5 4 37 37 H 1.08998 * 109.46974 * 209.99959 * 8 7 5 38 38 H 1.08999 * 109.47152 * 329.99929 * 8 7 5 39 39 H 0.97008 * 120.00201 * 359.97438 * 9 8 7 40 40 H 0.96994 * 119.99948 * 179.97438 * 17 16 14 41 41 H 1.07996 * 119.99772 * 359.97438 * 23 22 12 42 42 H 1.08000 * 120.00158 * 180.22801 * 24 23 22 43 43 H 1.07995 * 120.00317 * 179.83463 * 25 24 23 44 44 H 1.07996 * 120.00151 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.99906 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2856 2.1359 1.0589 5 6 2.7149 3.3488 0.6675 6 6 3.1176 4.4844 1.5727 7 6 2.7202 3.3656 -0.6756 8 6 3.1232 4.5213 -1.5549 9 7 4.5578 4.4406 -1.8404 10 6 5.1446 5.3753 -2.6140 11 8 4.4848 6.2829 -3.0741 12 6 6.6205 5.2926 -2.9072 13 1 7.1796 5.3355 -1.9726 14 6 6.9205 3.9952 -3.6130 15 1 6.1980 3.5719 -4.2950 16 6 8.1173 3.3488 -3.3878 17 7 8.9424 3.7949 -2.4659 18 14 8.5668 1.8392 -4.3921 19 1 7.4773 1.5443 -5.3572 20 1 9.8280 2.0952 -5.1331 21 1 8.7526 0.6784 -3.4848 22 6 7.0232 6.4475 -3.7876 23 6 6.5404 6.5325 -5.0801 24 6 6.9067 7.5940 -5.8862 25 6 7.7623 8.5661 -5.4027 26 6 8.2492 8.4784 -4.1119 27 6 7.8798 7.4189 -3.3045 28 8 2.2924 2.1564 -1.0890 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2459 5.1012 1.7914 35 1 3.5208 4.0826 2.5023 36 1 3.8771 5.0906 1.0792 37 1 2.5638 4.4791 -2.4894 38 1 2.9066 5.4594 -1.0438 39 1 5.0854 3.7143 -1.4726 40 1 9.7842 3.3399 -2.3073 41 1 5.8749 5.7711 -5.4591 42 1 6.5266 7.6625 -6.8948 43 1 8.0506 9.3940 -6.0334 44 1 8.9180 9.2376 -3.7342 45 1 8.2605 7.3501 -2.2961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436490087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:12 Heat of formation + Delta-G solvation = -8.415743 kcal Electronic energy + Delta-G solvation = -27408.762532 eV Core-core repulsion = 23585.137305 eV Total energy + Delta-G solvation = -3823.625227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.36780 -39.20319 -37.79031 -35.21617 -34.99522 -33.78270 -33.66882 -31.17611 -30.83293 -29.96333 -28.56912 -27.21008 -25.73754 -23.99396 -23.22156 -21.63139 -21.56486 -20.93394 -20.47268 -19.40176 -17.05417 -16.89400 -16.56178 -16.04777 -15.87933 -15.30548 -15.13358 -14.62106 -14.49834 -14.24941 -13.91950 -13.89102 -13.42305 -13.29429 -13.11667 -12.80133 -12.74994 -12.55181 -12.33675 -12.26391 -12.09134 -11.96093 -11.68843 -11.50232 -11.42570 -11.10015 -11.03401 -10.89039 -10.51664 -10.42128 -10.30479 -10.04637 -9.47481 -8.97850 -8.75341 -8.50185 -8.45698 -7.97301 -7.64680 -6.31571 -4.36590 1.34710 2.34586 2.37284 2.57484 2.62096 3.16705 3.25898 3.29196 3.62227 3.84836 4.08290 4.26066 4.61829 4.75569 4.80292 4.87532 4.89559 5.05431 5.06582 5.31299 5.44832 5.49522 5.57349 5.59935 5.70138 5.73238 5.76974 5.78509 5.84028 5.87547 6.00817 6.12531 6.16825 6.26987 6.35302 6.46880 6.56654 6.83806 6.94218 7.00274 7.16064 7.34520 7.41639 7.59822 7.72467 7.72674 7.92062 8.03409 8.25495 8.67450 9.12498 9.29419 10.77134 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.003524 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.566464 B = 7943.510200 C = 9185.197516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C 0.194 3.806 4 N -0.482 5.482 5 C 0.007 3.993 6 C -0.074 4.074 7 C -0.060 4.060 8 C 0.210 3.790 9 N -0.728 5.728 10 C 0.531 3.469 11 O -0.565 6.565 12 C 0.050 3.950 13 H 0.094 0.906 14 C -0.516 4.516 15 H 0.063 0.937 16 C 0.076 3.924 17 N -0.878 5.878 18 Si 0.896 3.104 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.282 1.282 22 C -0.012 4.012 23 C -0.085 4.085 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.120 4.120 28 O -0.192 6.192 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.409 0.591 40 H 0.267 0.733 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 -2.715 5.065 12.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.013 4.013 4 N -0.212 5.212 5 C -0.114 4.114 6 C -0.132 4.132 7 C -0.113 4.113 8 C 0.086 3.914 9 N -0.382 5.382 10 C 0.321 3.679 11 O -0.444 6.444 12 C 0.029 3.971 13 H 0.111 0.889 14 C -0.553 4.553 15 H 0.081 0.919 16 C -0.129 4.129 17 N -0.514 5.514 18 Si 0.723 3.277 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.014 4.014 23 C -0.103 4.103 24 C -0.152 4.152 25 C -0.166 4.166 26 C -0.150 4.150 27 C -0.138 4.138 28 O -0.079 6.079 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.244 0.756 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.092 -2.322 5.386 12.547 hybrid contribution 0.773 -1.038 -1.100 1.698 sum -10.319 -3.360 4.286 11.668 Atomic orbital electron populations 1.21777 0.93172 1.02854 1.02929 1.20058 0.96740 0.84362 1.05275 1.26234 0.99574 0.96695 0.78809 1.70352 1.17074 1.03492 1.30275 1.21569 1.03078 0.94663 0.92060 1.20175 1.01702 0.93180 0.98108 1.23213 1.06624 0.86604 0.94861 1.19414 0.84258 0.90631 0.97142 1.46033 1.07202 1.31028 1.53939 1.21712 0.91762 0.79231 0.75155 1.90593 1.66707 1.34973 1.52094 1.18133 0.87083 0.93595 0.98284 0.88865 1.20711 1.03217 1.04273 1.27111 0.91902 1.24944 0.96133 0.97399 0.94437 1.69881 1.10509 1.40596 1.30429 0.86461 0.78837 0.82089 0.80310 1.19466 1.20597 1.20797 1.20038 0.93650 0.93023 0.94641 1.20836 0.98790 0.96814 0.93848 1.20961 0.99470 0.95678 0.99133 1.20809 1.00326 0.99394 0.96095 1.20907 1.00909 0.98529 0.94640 1.21001 0.99009 0.94190 0.99579 1.84411 1.63629 1.22383 1.37463 0.90948 0.91828 0.92128 0.88773 0.87655 0.90709 0.90469 0.90143 0.90339 0.88754 0.75577 0.92322 0.87077 0.87556 0.87677 0.87508 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.03 -0.24 6.56 -27.88 -0.18 -0.42 16 3 C 0.19 2.63 7.60 -12.94 -0.10 2.53 16 4 N -0.48 -7.18 11.29 -7.36 -0.08 -7.27 16 5 C 0.01 0.10 7.11 -82.81 -0.59 -0.48 16 6 C -0.07 -0.88 10.04 36.01 0.36 -0.52 16 7 C -0.06 -0.91 6.75 -35.69 -0.24 -1.15 16 8 C 0.21 3.29 5.83 -5.19 -0.03 3.26 16 9 N -0.73 -13.43 5.45 -61.47 -0.33 -13.77 16 10 C 0.53 11.54 7.04 -10.98 -0.08 11.46 16 11 O -0.56 -13.28 15.42 5.56 0.09 -13.19 16 12 C 0.05 1.17 2.45 -94.07 -0.23 0.94 16 13 H 0.09 2.31 7.00 -51.93 -0.36 1.95 16 14 C -0.52 -12.83 7.46 -34.44 -0.26 -13.09 16 15 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 16 C 0.08 1.92 5.45 -17.82 -0.10 1.82 16 17 N -0.88 -23.02 12.78 55.43 0.71 -22.31 16 18 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.01 -0.29 4.30 -104.62 -0.45 -0.74 16 23 C -0.08 -1.89 8.31 -39.58 -0.33 -2.22 16 24 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 25 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 27 C -0.12 -2.58 9.67 -39.58 -0.38 -2.96 16 28 O -0.19 -2.95 10.78 5.36 0.06 -2.89 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.95 7.80 -51.93 -0.41 0.54 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.37 7.81 -51.93 -0.41 0.96 16 39 H 0.41 7.61 8.35 -40.82 -0.34 7.27 16 40 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.11 2.51 7.89 -52.49 -0.41 2.09 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.11 2.33 7.96 -52.49 -0.42 1.91 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -30.11 387.43 -8.72 -38.83 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.54 Total: 11.06 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.43 Total: -11.35 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.29 Total: -43.34 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.14 Total: -16.09 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.11 -8.72 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436490087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.412 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds