Wall clock time and date at job start Tue Mar 31 2020 15:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46913 * 2 1 4 4 N 1.30253 * 125.62028 * 89.98057 * 3 2 1 5 5 C 1.34479 * 108.70176 * 179.77393 * 4 3 2 6 6 C 1.50706 * 126.16787 * 180.26610 * 5 4 3 7 7 C 1.34326 * 107.66824 * 0.38680 * 5 4 3 8 8 C 1.50702 * 126.44501 * 179.87597 * 7 5 4 9 9 N 1.46499 * 109.46885 * 89.71508 * 8 7 5 10 10 C 1.34777 * 119.99693 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00324 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99852 * 180.27536 * 10 9 8 13 13 H 1.08999 * 109.47024 * 59.71879 * 12 10 9 14 14 C 1.50699 * 109.46787 * 299.72182 * 12 10 9 15 15 H 1.08001 * 120.00238 * 334.04034 * 14 12 10 16 16 C 1.37879 * 120.00030 * 154.04272 * 14 12 10 17 17 N 1.31509 * 120.00218 * 173.51502 * 16 14 12 18 18 Si 1.86800 * 119.99627 * 353.51705 * 16 14 12 19 19 H 1.48501 * 109.47388 * 84.82049 * 18 16 14 20 20 H 1.48500 * 109.46995 * 204.81996 * 18 16 14 21 21 H 1.48503 * 109.47321 * 324.81655 * 18 16 14 22 22 C 1.50700 * 109.47265 * 179.72365 * 12 10 9 23 23 C 1.38238 * 119.99900 * 65.81563 * 22 12 10 24 24 C 1.38234 * 119.99624 * 179.79076 * 23 22 12 25 25 C 1.38237 * 119.99929 * 0.44375 * 24 23 22 26 26 C 1.38227 * 120.00300 * 359.81150 * 25 24 23 27 27 C 1.38231 * 119.99894 * 246.09443 * 22 12 10 28 28 O 1.33967 * 125.62067 * 269.99189 * 3 2 1 29 29 H 1.08993 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47326 * 300.00190 * 1 2 3 31 31 H 1.09001 * 109.46911 * 60.00125 * 1 2 3 32 32 H 1.09001 * 109.47326 * 239.99810 * 2 1 3 33 33 H 1.09001 * 109.46911 * 119.99875 * 2 1 3 34 34 H 1.09000 * 109.46960 * 270.14658 * 6 5 4 35 35 H 1.09000 * 109.46994 * 30.14465 * 6 5 4 36 36 H 1.08997 * 109.47006 * 150.14338 * 6 5 4 37 37 H 1.09001 * 109.46903 * 329.71247 * 8 7 5 38 38 H 1.08999 * 109.47073 * 209.71606 * 8 7 5 39 39 H 0.97001 * 120.00349 * 359.97438 * 9 8 7 40 40 H 0.97007 * 119.99814 * 179.97438 * 17 16 14 41 41 H 1.07994 * 120.00136 * 0.02562 * 23 22 12 42 42 H 1.08002 * 119.99724 * 180.28088 * 24 23 22 43 43 H 1.08004 * 119.99790 * 179.83942 * 25 24 23 44 44 H 1.07997 * 120.00096 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00360 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0588 5 6 2.7185 3.3474 0.6675 6 6 3.1268 4.4811 1.5726 7 6 2.7196 3.3657 -0.6756 8 6 3.1278 4.5195 -1.5549 9 7 4.5623 4.4329 -1.8395 10 6 5.1536 5.3656 -2.6121 11 8 4.4980 6.2763 -3.0722 12 6 6.6280 5.2730 -2.9100 13 1 6.8374 4.3324 -3.4193 14 6 7.4054 5.3299 -1.6203 15 1 6.9844 5.8241 -0.7572 16 6 8.6544 4.7510 -1.5421 17 7 9.3860 4.9093 -0.4608 18 14 9.3072 3.7418 -2.9721 19 1 9.9403 4.6446 -3.9668 20 1 10.3140 2.7707 -2.4737 21 1 8.1862 3.0079 -3.6125 22 6 7.0353 6.4241 -3.7932 23 6 6.9766 7.7188 -3.3123 24 6 7.3544 8.7743 -4.1210 25 6 7.7821 8.5358 -5.4138 26 6 7.8358 7.2417 -5.8964 27 6 7.4621 6.1858 -5.0862 28 8 2.2925 2.1564 -1.0890 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2574 5.0998 1.7948 35 1 3.5320 4.0773 2.5005 36 1 3.8863 5.0860 1.0773 37 1 2.9147 5.4586 -1.0442 38 1 2.5689 4.4794 -2.4898 39 1 5.0867 3.7047 -1.4712 40 1 10.2646 4.5017 -0.4057 41 1 6.6393 7.9053 -2.3035 42 1 7.3128 9.7854 -3.7438 43 1 8.0748 9.3607 -6.0465 44 1 8.1695 7.0555 -6.9065 45 1 7.5041 5.1746 -5.4633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436490090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:15 Heat of formation + Delta-G solvation = -3.792325 kcal Electronic energy + Delta-G solvation = -27493.232551 eV Core-core repulsion = 23669.807810 eV Total energy + Delta-G solvation = -3823.424741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.39400 -39.40442 -37.95629 -35.23838 -35.05738 -33.85809 -33.66744 -31.53834 -30.88314 -30.12467 -28.66091 -27.47852 -25.81640 -23.82005 -23.15857 -21.84824 -21.59822 -21.08501 -20.50256 -19.44502 -17.16433 -17.04871 -16.80796 -16.16873 -16.02343 -15.41261 -15.21466 -14.67961 -14.50490 -14.36343 -14.08263 -13.85965 -13.39133 -13.24260 -13.11401 -12.95032 -12.80643 -12.68234 -12.58698 -12.35262 -12.10480 -12.01634 -11.95470 -11.86050 -11.45566 -11.17473 -11.00532 -10.89093 -10.52655 -10.45861 -10.31272 -9.95152 -9.58959 -9.12994 -8.81816 -8.62436 -8.53794 -8.12086 -7.81935 -6.32213 -4.36886 1.31172 2.15767 2.22403 2.53843 2.60656 3.15742 3.21663 3.26329 3.46560 3.81794 3.95408 4.21614 4.58836 4.63919 4.75398 4.84319 4.88463 4.99454 5.03005 5.27329 5.42228 5.46299 5.54188 5.56631 5.61323 5.65305 5.71957 5.73638 5.81164 5.85203 5.93436 6.00878 6.04484 6.10184 6.28214 6.31402 6.37682 6.46557 6.73755 6.84477 6.88612 7.17259 7.25175 7.26634 7.59689 7.71052 7.80307 8.08449 8.19787 8.66081 8.96077 9.26017 10.78623 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.003372 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.538958 B = 8301.844974 C = 8967.727550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.194 3.806 4 N -0.481 5.481 5 C 0.016 3.984 6 C -0.077 4.077 7 C -0.067 4.067 8 C 0.212 3.788 9 N -0.727 5.727 10 C 0.541 3.459 11 O -0.557 6.557 12 C 0.023 3.977 13 H 0.069 0.931 14 C -0.516 4.516 15 H 0.083 0.917 16 C 0.089 3.911 17 N -0.880 5.880 18 Si 0.863 3.137 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.264 1.264 22 C -0.029 4.029 23 C -0.070 4.070 24 C -0.130 4.130 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.136 4.136 28 O -0.195 6.195 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.409 0.591 40 H 0.269 0.731 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -5.903 -1.390 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.014 4.014 4 N -0.211 5.211 5 C -0.105 4.105 6 C -0.134 4.134 7 C -0.120 4.120 8 C 0.088 3.912 9 N -0.382 5.382 10 C 0.330 3.670 11 O -0.435 6.435 12 C 0.002 3.998 13 H 0.087 0.913 14 C -0.553 4.553 15 H 0.101 0.899 16 C -0.116 4.116 17 N -0.515 5.515 18 Si 0.689 3.311 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.031 4.031 23 C -0.088 4.088 24 C -0.148 4.148 25 C -0.160 4.160 26 C -0.147 4.147 27 C -0.154 4.154 28 O -0.082 6.082 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.244 0.756 40 H 0.079 0.921 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.837 -5.510 -1.051 14.009 hybrid contribution 0.946 -0.728 -1.138 1.649 sum -11.891 -6.238 -2.188 13.605 Atomic orbital electron populations 1.21779 0.93159 1.02859 1.02958 1.20056 0.96759 0.84327 1.05235 1.26246 0.99604 0.96679 0.78825 1.70370 1.16876 1.03572 1.30247 1.21619 1.02211 0.94601 0.92096 1.20217 1.01727 0.93198 0.98285 1.23163 1.07226 0.86624 0.94937 1.19414 0.83615 0.91021 0.97178 1.46000 1.07525 1.30906 1.53736 1.21096 0.90257 0.79995 0.75638 1.90612 1.66310 1.34086 1.52465 1.18504 0.89137 0.94762 0.97408 0.91341 1.20509 1.01669 1.38539 0.94552 0.89878 1.24925 0.95964 0.95323 0.95431 1.69863 1.11016 1.42938 1.27716 0.87022 0.79422 0.81090 0.83540 1.18908 1.21100 1.18878 1.20061 0.95189 0.95466 0.92336 1.20843 0.96910 0.91839 0.99195 1.21037 1.00743 0.98576 0.94429 1.20864 1.02767 0.96261 0.96139 1.20873 1.01751 0.93075 0.99048 1.20966 1.02001 0.98308 0.94131 1.84384 1.63936 1.22370 1.37535 0.90945 0.91769 0.92160 0.88859 0.87613 0.90717 0.90346 0.89756 0.88496 0.90266 0.75597 0.92099 0.86396 0.87091 0.87327 0.87287 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.03 -0.22 6.56 -27.88 -0.18 -0.40 16 3 C 0.19 2.54 7.60 -12.95 -0.10 2.44 16 4 N -0.48 -7.18 11.29 -7.36 -0.08 -7.26 16 5 C 0.02 0.23 7.11 -82.81 -0.59 -0.36 16 6 C -0.08 -0.99 10.05 36.01 0.36 -0.63 16 7 C -0.07 -0.99 6.75 -35.69 -0.24 -1.23 16 8 C 0.21 3.21 5.83 -5.19 -0.03 3.18 16 9 N -0.73 -12.96 5.45 -61.47 -0.34 -13.30 16 10 C 0.54 11.32 7.03 -10.98 -0.08 11.25 16 11 O -0.56 -12.61 15.41 5.56 0.09 -12.53 16 12 C 0.02 0.52 1.89 -94.07 -0.18 0.34 16 13 H 0.07 1.51 5.15 -51.93 -0.27 1.25 16 14 C -0.52 -12.97 8.03 -34.44 -0.28 -13.25 16 15 H 0.08 2.28 8.05 -52.49 -0.42 1.85 16 16 C 0.09 2.34 5.47 -17.82 -0.10 2.24 16 17 N -0.88 -24.75 13.96 55.43 0.77 -23.98 16 18 Si 0.86 19.91 26.73 -169.99 -4.54 15.36 16 19 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.26 -5.70 6.31 56.52 0.36 -5.34 16 22 C -0.03 -0.66 3.95 -104.62 -0.41 -1.07 16 23 C -0.07 -1.52 8.30 -39.58 -0.33 -1.84 16 24 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 25 C -0.14 -2.50 10.05 -39.59 -0.40 -2.90 16 26 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 27 C -0.14 -2.77 9.25 -39.58 -0.37 -3.14 16 28 O -0.20 -2.84 10.78 5.36 0.06 -2.79 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.14 7.80 -51.93 -0.40 0.73 16 37 H 0.10 1.41 7.81 -51.93 -0.41 1.00 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.41 7.25 8.35 -40.82 -0.34 6.91 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.12 2.63 7.90 -52.49 -0.41 2.22 16 42 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.11 2.02 7.96 -52.49 -0.42 1.61 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -31.10 382.63 -8.12 -39.22 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.50 Total: 11.15 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.34 Total: -11.65 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.36 Total: -44.54 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.14 Total: -15.31 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.54 Total: 15.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.10 -8.12 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436490090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.431 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds