Wall clock time and date at job start Tue Mar 31 2020 15:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46913 * 2 1 4 4 N 1.30253 * 125.62028 * 89.98057 * 3 2 1 5 5 C 1.34479 * 108.70176 * 179.77393 * 4 3 2 6 6 C 1.50706 * 126.16787 * 180.26610 * 5 4 3 7 7 C 1.34326 * 107.66824 * 0.38680 * 5 4 3 8 8 C 1.50702 * 126.44501 * 179.87597 * 7 5 4 9 9 N 1.46499 * 109.46885 * 89.71508 * 8 7 5 10 10 C 1.34777 * 119.99693 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00324 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99852 * 180.27536 * 10 9 8 13 13 H 1.08999 * 109.47024 * 59.71879 * 12 10 9 14 14 C 1.50699 * 109.46787 * 299.72182 * 12 10 9 15 15 H 1.08001 * 120.00238 * 334.04034 * 14 12 10 16 16 C 1.37879 * 120.00030 * 154.04272 * 14 12 10 17 17 N 1.31509 * 120.00218 * 173.51502 * 16 14 12 18 18 Si 1.86800 * 119.99627 * 353.51705 * 16 14 12 19 19 H 1.48501 * 109.47388 * 84.82049 * 18 16 14 20 20 H 1.48500 * 109.46995 * 204.81996 * 18 16 14 21 21 H 1.48503 * 109.47321 * 324.81655 * 18 16 14 22 22 C 1.50700 * 109.47265 * 179.72365 * 12 10 9 23 23 C 1.38238 * 119.99900 * 65.81563 * 22 12 10 24 24 C 1.38234 * 119.99624 * 179.79076 * 23 22 12 25 25 C 1.38237 * 119.99929 * 0.44375 * 24 23 22 26 26 C 1.38227 * 120.00300 * 359.81150 * 25 24 23 27 27 C 1.38231 * 119.99894 * 246.09443 * 22 12 10 28 28 O 1.33967 * 125.62067 * 269.99189 * 3 2 1 29 29 H 1.08993 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47326 * 300.00190 * 1 2 3 31 31 H 1.09001 * 109.46911 * 60.00125 * 1 2 3 32 32 H 1.09001 * 109.47326 * 239.99810 * 2 1 3 33 33 H 1.09001 * 109.46911 * 119.99875 * 2 1 3 34 34 H 1.09000 * 109.46960 * 270.14658 * 6 5 4 35 35 H 1.09000 * 109.46994 * 30.14465 * 6 5 4 36 36 H 1.08997 * 109.47006 * 150.14338 * 6 5 4 37 37 H 1.09001 * 109.46903 * 329.71247 * 8 7 5 38 38 H 1.08999 * 109.47073 * 209.71606 * 8 7 5 39 39 H 0.97001 * 120.00349 * 359.97438 * 9 8 7 40 40 H 0.97007 * 119.99814 * 179.97438 * 17 16 14 41 41 H 1.07994 * 120.00136 * 0.02562 * 23 22 12 42 42 H 1.08002 * 119.99724 * 180.28088 * 24 23 22 43 43 H 1.08004 * 119.99790 * 179.83942 * 25 24 23 44 44 H 1.07997 * 120.00096 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00360 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0588 5 6 2.7185 3.3474 0.6675 6 6 3.1268 4.4811 1.5726 7 6 2.7196 3.3657 -0.6756 8 6 3.1278 4.5195 -1.5549 9 7 4.5623 4.4329 -1.8395 10 6 5.1536 5.3656 -2.6121 11 8 4.4980 6.2763 -3.0722 12 6 6.6280 5.2730 -2.9100 13 1 6.8374 4.3324 -3.4193 14 6 7.4054 5.3299 -1.6203 15 1 6.9844 5.8241 -0.7572 16 6 8.6544 4.7510 -1.5421 17 7 9.3860 4.9093 -0.4608 18 14 9.3072 3.7418 -2.9721 19 1 9.9403 4.6446 -3.9668 20 1 10.3140 2.7707 -2.4737 21 1 8.1862 3.0079 -3.6125 22 6 7.0353 6.4241 -3.7932 23 6 6.9766 7.7188 -3.3123 24 6 7.3544 8.7743 -4.1210 25 6 7.7821 8.5358 -5.4138 26 6 7.8358 7.2417 -5.8964 27 6 7.4621 6.1858 -5.0862 28 8 2.2925 2.1564 -1.0890 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2574 5.0998 1.7948 35 1 3.5320 4.0773 2.5005 36 1 3.8863 5.0860 1.0773 37 1 2.9147 5.4586 -1.0442 38 1 2.5689 4.4794 -2.4898 39 1 5.0867 3.7047 -1.4712 40 1 10.2646 4.5017 -0.4057 41 1 6.6393 7.9053 -2.3035 42 1 7.3128 9.7854 -3.7438 43 1 8.0748 9.3607 -6.0465 44 1 8.1695 7.0555 -6.9065 45 1 7.5041 5.1746 -5.4633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436490090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:14 Heat of formation + Delta-G solvation = -24.360665 kcal Electronic energy + Delta-G solvation = -27494.124461 eV Core-core repulsion = 23669.807810 eV Total energy + Delta-G solvation = -3824.316651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.49788 -41.02759 -39.47281 -36.45158 -36.20108 -35.53942 -34.84533 -33.35700 -31.98880 -31.62029 -30.02217 -28.95275 -26.89021 -25.43537 -24.33161 -23.36202 -22.69743 -22.51568 -21.59259 -21.04469 -19.10361 -18.41955 -18.08517 -17.60102 -17.33586 -16.79036 -16.47875 -16.23251 -15.85291 -15.60307 -15.44234 -15.13457 -14.82430 -14.47890 -14.35424 -14.27384 -14.24176 -14.07986 -13.83274 -13.60321 -13.52104 -13.43368 -13.10894 -12.97717 -12.74501 -12.62469 -12.08942 -12.04771 -12.00923 -11.95990 -11.67169 -11.63120 -11.42638 -10.90144 -10.71719 -10.12914 -9.74477 -9.62861 -9.36683 -8.35374 -6.42850 0.18647 0.64899 0.71487 1.32205 1.37484 1.41300 1.44943 1.52683 1.78625 2.29612 2.46739 2.89901 2.95760 3.16365 3.50528 3.72423 3.99157 4.07309 4.14562 4.20340 4.21086 4.22027 4.32439 4.35669 4.40272 4.50923 4.59840 4.61818 4.64818 4.72387 4.81957 4.88929 4.91338 4.94513 5.03073 5.04136 5.18579 5.24715 5.32636 5.35122 5.36517 5.43160 5.70071 5.74742 5.95128 6.18683 6.30189 6.52605 6.60002 6.61761 7.22538 7.31369 8.78825 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.003372 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.538958 B = 8301.844974 C = 8967.727550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.028 4.028 3 C 0.203 3.797 4 N -0.508 5.508 5 C 0.009 3.991 6 C -0.075 4.075 7 C -0.082 4.082 8 C 0.217 3.783 9 N -0.719 5.719 10 C 0.540 3.460 11 O -0.576 6.576 12 C 0.025 3.975 13 H 0.074 0.926 14 C -0.502 4.502 15 H 0.045 0.955 16 C 0.041 3.959 17 N -0.928 5.928 18 Si 0.915 3.085 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.239 1.239 22 C -0.057 4.057 23 C -0.100 4.100 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.153 4.153 28 O -0.204 6.204 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.408 0.592 40 H 0.269 0.731 41 H 0.093 0.907 42 H 0.135 0.865 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 -6.786 -3.752 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.004 4.004 4 N -0.238 5.238 5 C -0.111 4.111 6 C -0.132 4.132 7 C -0.135 4.135 8 C 0.094 3.906 9 N -0.371 5.371 10 C 0.329 3.671 11 O -0.456 6.456 12 C 0.004 3.996 13 H 0.092 0.908 14 C -0.540 4.540 15 H 0.063 0.937 16 C -0.160 4.160 17 N -0.566 5.566 18 Si 0.739 3.261 19 H -0.188 1.188 20 H -0.212 1.212 21 H -0.163 1.163 22 C -0.058 4.058 23 C -0.119 4.119 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.144 4.144 27 C -0.171 4.171 28 O -0.091 6.091 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.244 0.756 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.153 0.847 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.383 -6.406 -3.406 15.223 hybrid contribution 1.015 -0.415 -0.362 1.154 sum -12.368 -6.821 -3.768 14.618 Atomic orbital electron populations 1.21762 0.91846 1.04430 1.02176 1.20419 0.97711 0.81599 1.06829 1.27331 0.97339 0.97751 0.78013 1.70410 1.18363 1.03862 1.31139 1.21926 1.01658 0.95096 0.92431 1.20238 1.02226 0.92904 0.97849 1.22962 1.08745 0.86976 0.94777 1.19427 0.81801 0.91689 0.97679 1.45943 1.08806 1.29911 1.52478 1.20871 0.89873 0.80270 0.76075 1.90587 1.66555 1.34907 1.53578 1.18435 0.89644 0.95487 0.96073 0.90823 1.20472 1.01674 1.37023 0.94782 0.93677 1.25610 0.96217 0.96483 0.97675 1.69992 1.11642 1.44899 1.30042 0.86178 0.79460 0.79814 0.80683 1.18772 1.21159 1.16276 1.20080 0.96943 0.95226 0.93588 1.20846 0.99041 0.93071 0.98907 1.21368 0.99880 0.98935 0.94985 1.21349 1.00855 0.97497 0.95685 1.21351 1.00113 0.92612 1.00366 1.21237 1.02254 0.99916 0.93697 1.84384 1.64231 1.22343 1.38176 0.88189 0.92805 0.92675 0.86884 0.86321 0.88709 0.90211 0.90929 0.88047 0.89653 0.75628 0.92158 0.88894 0.84714 0.83259 0.83526 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.03 -0.41 6.56 29.85 0.20 -0.22 16 3 C 0.20 5.13 7.60 88.34 0.67 5.80 16 4 N -0.51 -15.01 11.29 -291.98 -3.30 -18.31 16 5 C 0.01 0.28 7.11 41.26 0.29 0.57 16 6 C -0.08 -1.97 10.05 71.24 0.72 -1.25 16 7 C -0.08 -2.45 6.75 24.79 0.17 -2.28 16 8 C 0.22 6.68 5.83 85.63 0.50 7.18 16 9 N -0.72 -26.22 5.45 -466.78 -2.54 -28.76 16 10 C 0.54 23.16 7.03 87.66 0.62 23.77 16 11 O -0.58 -26.65 15.41 -3.02 -0.05 -26.70 16 12 C 0.02 1.13 1.89 -13.03 -0.02 1.11 16 13 H 0.07 3.22 5.15 -2.39 -0.01 3.20 16 14 C -0.50 -26.27 8.03 25.60 0.21 -26.07 16 15 H 0.04 2.64 8.05 -2.91 -0.02 2.62 16 16 C 0.04 2.20 5.47 84.66 0.46 2.66 16 17 N -0.93 -54.07 13.96 21.45 0.30 -53.77 16 18 Si 0.91 40.81 26.73 68.60 1.83 42.64 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.24 -9.60 6.31 99.48 0.63 -8.97 16 22 C -0.06 -2.55 3.95 -19.87 -0.08 -2.63 16 23 C -0.10 -4.43 8.30 22.27 0.18 -4.25 16 24 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 25 C -0.14 -4.30 10.05 22.27 0.22 -4.08 16 26 C -0.13 -4.15 10.05 22.27 0.22 -3.93 16 27 C -0.15 -5.95 9.25 22.27 0.21 -5.74 16 28 O -0.20 -5.82 10.78 -3.72 -0.04 -5.86 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.06 7.80 -2.39 -0.02 2.04 16 37 H 0.10 3.02 7.81 -2.39 -0.02 3.01 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.41 14.89 8.35 -92.71 -0.77 14.11 16 40 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 41 H 0.09 4.42 7.90 -2.91 -0.02 4.40 16 42 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 43 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 44 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 45 H 0.12 4.22 7.96 -2.91 -0.02 4.20 16 Total: -1.00 -69.31 382.63 1.85 -67.45 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.15 Total: 38.31 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 5.50 Total: -15.00 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -5.54 Total: -100.84 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.09 Total: -32.56 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.83 Total: 42.64 kcal Total: -69.31 1.85 -67.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436490090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.092 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds