Wall clock time and date at job start Tue Mar 31 2020 16:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47396 * 2 1 4 4 C 1.53005 * 109.47353 * 119.99665 * 2 1 3 5 5 N 1.46500 * 109.47345 * 174.99826 * 4 2 1 6 6 C 1.46497 * 119.99478 * 96.11544 * 5 4 2 7 7 C 1.50697 * 109.47465 * 73.52842 * 6 5 4 8 8 H 1.07999 * 119.99614 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99891 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99678 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00396 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47429 * 89.99315 * 11 9 7 13 13 H 1.48499 * 109.47254 * 209.99804 * 11 9 7 14 14 H 1.48504 * 109.47041 * 329.99230 * 11 9 7 15 15 C 1.34768 * 119.99872 * 276.11581 * 5 4 2 16 16 O 1.21571 * 120.00804 * 3.30074 * 15 5 4 17 17 C 1.47683 * 119.99777 * 183.30513 * 15 5 4 18 18 C 1.40585 * 120.26024 * 28.15087 * 17 15 5 19 19 N 1.30810 * 121.50491 * 179.76088 * 18 17 15 20 20 C 1.33895 * 121.71682 * 0.50722 * 19 18 17 21 21 C 1.40322 * 120.72340 * 179.74134 * 20 19 18 22 22 C 1.37694 * 119.67551 * 180.02562 * 21 20 19 23 23 O 1.35779 * 119.59154 * 180.02562 * 22 21 20 24 24 C 1.39924 * 120.81535 * 359.97438 * 22 21 20 25 25 C 1.35939 * 120.76572 * 0.03004 * 24 22 21 26 26 C 1.40640 * 119.84090 * 359.95291 * 25 24 22 27 27 C 1.39110 * 120.26279 * 208.43062 * 17 15 5 28 28 H 1.09000 * 109.47051 * 299.99928 * 1 2 3 29 29 H 1.09001 * 109.47165 * 60.00135 * 1 2 3 30 30 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47139 * 239.99530 * 2 1 3 32 32 H 1.08999 * 109.47360 * 59.99665 * 3 2 1 33 33 H 1.08997 * 109.47468 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46853 * 300.00056 * 3 2 1 35 35 H 1.09006 * 109.46661 * 54.99792 * 4 2 1 36 36 H 1.09001 * 109.47214 * 295.00438 * 4 2 1 37 37 H 1.08999 * 109.47655 * 313.52164 * 6 5 4 38 38 H 1.09007 * 109.47099 * 193.53109 * 6 5 4 39 39 H 0.97003 * 119.99835 * 180.02562 * 10 9 7 40 40 H 1.07991 * 119.24214 * 0.02562 * 18 17 15 41 41 H 1.07993 * 120.15967 * 359.97438 * 21 20 19 42 42 H 0.96700 * 113.99777 * 90.00256 * 23 22 21 43 43 H 1.07995 * 119.61768 * 179.97438 * 24 22 21 44 44 H 1.07996 * 120.07845 * 179.97438 * 25 24 22 45 45 H 1.08005 * 120.99762 * 359.94841 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3338 0.1637 1.8768 7 6 4.2782 -0.0765 3.3635 8 1 3.6818 -0.8860 3.7577 9 6 4.9896 0.7365 4.2202 10 7 4.9414 0.5266 5.5176 11 14 6.0217 2.1361 3.5382 12 1 5.1945 3.3665 3.4556 13 1 7.1811 2.3783 4.4340 14 1 6.5102 1.7761 2.1829 15 6 4.0760 -1.8338 0.5054 16 8 3.3862 -2.6205 -0.1136 17 6 5.5454 -1.9822 0.5066 18 6 6.3027 -1.5262 1.5997 19 7 7.6046 -1.6495 1.6284 20 6 8.2814 -2.2059 0.6159 21 6 9.6789 -2.3227 0.6662 22 6 10.3532 -2.8981 -0.3875 23 8 11.7054 -3.0108 -0.3368 24 6 9.6622 -3.3691 -1.5093 25 6 8.3086 -3.2687 -1.5849 26 6 7.5897 -2.6866 -0.5256 27 6 6.1916 -2.5691 -0.5766 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1583 2.1370 37 1 3.9644 1.1652 1.6565 38 1 5.3640 0.0726 1.5323 39 1 5.4416 1.0988 6.1204 40 1 5.7975 -1.0676 2.4368 41 1 10.2228 -1.9624 1.5267 42 1 12.0167 -3.8362 0.0593 43 1 10.2106 -3.8166 -2.3249 44 1 7.7865 -3.6355 -2.4563 45 1 5.6344 -2.9246 -1.4308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548634019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:13 Heat of formation + Delta-G solvation = -12.003593 kcal Electronic energy + Delta-G solvation = -28188.667054 eV Core-core repulsion = 24364.886246 eV Total energy + Delta-G solvation = -3823.780808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90572 -39.54547 -38.23166 -36.27608 -35.74032 -34.25895 -33.04034 -32.50294 -30.25335 -29.63199 -28.46357 -26.90306 -26.10246 -23.99516 -23.69129 -22.51009 -22.11702 -20.39337 -19.55893 -18.61703 -17.74794 -17.21233 -16.67150 -16.56100 -15.73978 -15.59930 -14.92010 -14.86430 -14.52537 -14.39488 -14.23020 -13.97729 -13.81441 -13.27454 -13.19742 -13.00549 -12.67386 -12.48838 -12.36303 -12.15422 -11.94835 -11.59840 -11.47041 -11.33073 -11.10092 -10.97173 -10.86732 -10.79575 -10.46277 -10.36041 -10.28587 -10.13002 -9.76144 -9.55284 -9.06500 -8.86730 -8.46386 -8.19960 -7.86607 -6.38602 -4.43849 0.31559 0.79312 1.92351 2.71107 3.13278 3.21963 3.25072 3.42391 3.61757 3.91635 4.15791 4.26811 4.53622 4.71291 4.85447 4.89140 4.94043 5.06055 5.10192 5.21440 5.22697 5.25904 5.36991 5.59668 5.72074 5.81868 5.86407 5.93176 5.95750 5.96132 6.08282 6.18563 6.22175 6.23295 6.26421 6.28144 6.35088 6.41196 6.49173 6.50926 6.63351 6.68160 6.95623 7.11156 7.29383 7.46862 7.90500 8.21243 8.25132 8.63361 8.72056 9.18421 10.71982 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.004558 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.446633 B = 6141.062820 C = 8009.509759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.148 4.148 4 C 0.128 3.872 5 N -0.576 5.576 6 C 0.182 3.818 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.088 3.912 10 N -0.872 5.872 11 Si 0.864 3.136 12 H -0.271 1.271 13 H -0.278 1.278 14 H -0.260 1.260 15 C 0.561 3.439 16 O -0.559 6.559 17 C -0.184 4.184 18 C 0.155 3.845 19 N -0.485 5.485 20 C 0.155 3.845 21 C -0.127 4.127 22 C 0.124 3.876 23 O -0.498 6.498 24 C -0.154 4.154 25 C -0.066 4.066 26 C -0.130 4.130 27 C -0.003 4.003 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.049 0.951 39 H 0.271 0.729 40 H 0.224 0.776 41 H 0.142 0.858 42 H 0.392 0.608 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 -4.237 -12.259 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.205 4.205 4 C 0.005 3.995 5 N -0.304 5.304 6 C 0.061 3.939 7 C -0.592 4.592 8 H 0.104 0.896 9 C -0.119 4.119 10 N -0.507 5.507 11 Si 0.690 3.310 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.185 1.185 15 C 0.349 3.651 16 O -0.440 6.440 17 C -0.189 4.189 18 C -0.015 4.015 19 N -0.193 5.193 20 C 0.033 3.967 21 C -0.146 4.146 22 C 0.078 3.922 23 O -0.308 6.308 24 C -0.173 4.173 25 C -0.085 4.085 26 C -0.132 4.132 27 C -0.030 4.030 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.239 0.761 41 H 0.160 0.840 42 H 0.248 0.752 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.222 -3.728 -11.928 13.191 hybrid contribution 0.247 0.105 -0.618 0.674 sum 4.469 -3.623 -12.546 13.802 Atomic orbital electron populations 1.21739 0.95059 1.01599 1.01509 1.21487 0.95535 0.96645 0.99464 1.21915 1.01636 0.95775 1.01176 1.21446 0.79347 1.00955 0.97766 1.47760 1.06987 1.26631 1.49069 1.20613 0.91350 0.88314 0.93608 1.21280 1.31747 1.17760 0.88394 0.89585 1.24880 0.95625 0.96727 0.94660 1.69869 1.40296 1.38321 1.02244 0.87006 0.80776 0.83009 0.80242 1.19635 1.20296 1.18465 1.17938 0.86660 0.81172 0.79361 1.90700 1.64257 1.44156 1.44917 1.21165 0.95528 1.04533 0.97710 1.25544 0.89001 0.88651 0.98314 1.68326 1.09631 1.15596 1.25785 1.18948 0.93725 0.94171 0.89822 1.21255 0.92113 1.02050 0.99217 1.18378 0.82717 0.97992 0.93118 1.84784 1.17369 1.44342 1.84334 1.21068 0.94475 1.02786 0.98928 1.20871 0.93697 0.96722 0.97191 1.18793 0.94045 1.03728 0.96683 1.21813 0.92385 0.91506 0.97261 0.92544 0.92976 0.92710 0.91116 0.92374 0.92298 0.93496 0.91005 0.89239 0.94618 0.93425 0.91854 0.76117 0.84049 0.75200 0.85087 0.84808 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 37.15 0.34 -1.41 16 2 C -0.11 -1.68 3.08 -90.62 -0.28 -1.96 16 3 C -0.15 -2.15 8.43 37.16 0.31 -1.84 16 4 C 0.13 2.24 4.66 -4.04 -0.02 2.22 16 5 N -0.58 -11.36 2.23 -176.23 -0.39 -11.75 16 6 C 0.18 3.86 3.19 -5.20 -0.02 3.84 16 7 C -0.55 -13.63 7.60 -34.44 -0.26 -13.89 16 8 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.09 2.26 5.45 -17.82 -0.10 2.17 16 10 N -0.87 -24.07 13.96 55.43 0.77 -23.30 16 11 Si 0.86 19.47 27.47 -169.99 -4.67 14.80 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 15 C 0.56 11.29 7.41 -12.41 -0.09 11.20 16 16 O -0.56 -11.89 16.32 5.30 0.09 -11.81 16 17 C -0.18 -3.53 5.49 -104.83 -0.58 -4.11 16 18 C 0.16 3.21 8.56 -17.10 -0.15 3.07 16 19 N -0.49 -9.81 10.30 -10.69 -0.11 -9.92 16 20 C 0.15 2.70 6.60 -84.80 -0.56 2.14 16 21 C -0.13 -1.89 9.93 -39.00 -0.39 -2.28 16 22 C 0.12 1.54 6.69 -39.15 -0.26 1.28 16 23 O -0.50 -5.15 13.47 -19.05 -0.26 -5.41 16 24 C -0.15 -1.71 9.89 -39.78 -0.39 -2.10 16 25 C -0.07 -0.79 9.75 -39.50 -0.39 -1.17 16 26 C -0.13 -2.02 5.74 -106.79 -0.61 -2.63 16 27 C 0.00 -0.05 9.46 -38.45 -0.36 -0.41 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.94 6.05 -51.93 -0.31 0.62 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.28 7.66 -51.93 -0.40 0.88 16 36 H 0.09 1.59 7.84 -51.93 -0.41 1.18 16 37 H 0.04 0.74 5.54 -51.93 -0.29 0.45 16 38 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.22 5.05 3.43 -52.49 -0.18 4.87 16 41 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.39 2.06 9.06 45.56 0.41 2.47 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.15 2.06 7.94 -52.48 -0.42 1.64 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -29.97 365.73 -8.00 -37.97 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.15 Total: 9.80 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.80 Total: -5.90 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.27 Total: -44.97 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.17 Total: -17.22 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.97 -8.00 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548634019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.968 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds