Wall clock time and date at job start Tue Mar 31 2020 16:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47396 * 2 1 4 4 C 1.53005 * 109.47353 * 119.99665 * 2 1 3 5 5 N 1.46500 * 109.47345 * 174.99826 * 4 2 1 6 6 C 1.46497 * 119.99478 * 96.11544 * 5 4 2 7 7 C 1.50697 * 109.47465 * 73.52842 * 6 5 4 8 8 H 1.07999 * 119.99614 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99891 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99678 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00396 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47429 * 89.99315 * 11 9 7 13 13 H 1.48499 * 109.47254 * 209.99804 * 11 9 7 14 14 H 1.48504 * 109.47041 * 329.99230 * 11 9 7 15 15 C 1.34768 * 119.99872 * 276.11581 * 5 4 2 16 16 O 1.21571 * 120.00804 * 3.30074 * 15 5 4 17 17 C 1.47683 * 119.99777 * 183.30513 * 15 5 4 18 18 C 1.40585 * 120.26024 * 28.15087 * 17 15 5 19 19 N 1.30810 * 121.50491 * 179.76088 * 18 17 15 20 20 C 1.33895 * 121.71682 * 0.50722 * 19 18 17 21 21 C 1.40322 * 120.72340 * 179.74134 * 20 19 18 22 22 C 1.37694 * 119.67551 * 180.02562 * 21 20 19 23 23 O 1.35779 * 119.59154 * 180.02562 * 22 21 20 24 24 C 1.39924 * 120.81535 * 359.97438 * 22 21 20 25 25 C 1.35939 * 120.76572 * 0.03004 * 24 22 21 26 26 C 1.40640 * 119.84090 * 359.95291 * 25 24 22 27 27 C 1.39110 * 120.26279 * 208.43062 * 17 15 5 28 28 H 1.09000 * 109.47051 * 299.99928 * 1 2 3 29 29 H 1.09001 * 109.47165 * 60.00135 * 1 2 3 30 30 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47139 * 239.99530 * 2 1 3 32 32 H 1.08999 * 109.47360 * 59.99665 * 3 2 1 33 33 H 1.08997 * 109.47468 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46853 * 300.00056 * 3 2 1 35 35 H 1.09006 * 109.46661 * 54.99792 * 4 2 1 36 36 H 1.09001 * 109.47214 * 295.00438 * 4 2 1 37 37 H 1.08999 * 109.47655 * 313.52164 * 6 5 4 38 38 H 1.09007 * 109.47099 * 193.53109 * 6 5 4 39 39 H 0.97003 * 119.99835 * 180.02562 * 10 9 7 40 40 H 1.07991 * 119.24214 * 0.02562 * 18 17 15 41 41 H 1.07993 * 120.15967 * 359.97438 * 21 20 19 42 42 H 0.96700 * 113.99777 * 90.00256 * 23 22 21 43 43 H 1.07995 * 119.61768 * 179.97438 * 24 22 21 44 44 H 1.07996 * 120.07845 * 179.97438 * 25 24 22 45 45 H 1.08005 * 120.99762 * 359.94841 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3338 0.1637 1.8768 7 6 4.2782 -0.0765 3.3635 8 1 3.6818 -0.8860 3.7577 9 6 4.9896 0.7365 4.2202 10 7 4.9414 0.5266 5.5176 11 14 6.0217 2.1361 3.5382 12 1 5.1945 3.3665 3.4556 13 1 7.1811 2.3783 4.4340 14 1 6.5102 1.7761 2.1829 15 6 4.0760 -1.8338 0.5054 16 8 3.3862 -2.6205 -0.1136 17 6 5.5454 -1.9822 0.5066 18 6 6.3027 -1.5262 1.5997 19 7 7.6046 -1.6495 1.6284 20 6 8.2814 -2.2059 0.6159 21 6 9.6789 -2.3227 0.6662 22 6 10.3532 -2.8981 -0.3875 23 8 11.7054 -3.0108 -0.3368 24 6 9.6622 -3.3691 -1.5093 25 6 8.3086 -3.2687 -1.5849 26 6 7.5897 -2.6866 -0.5256 27 6 6.1916 -2.5691 -0.5766 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1583 2.1370 37 1 3.9644 1.1652 1.6565 38 1 5.3640 0.0726 1.5323 39 1 5.4416 1.0988 6.1204 40 1 5.7975 -1.0676 2.4368 41 1 10.2228 -1.9624 1.5267 42 1 12.0167 -3.8362 0.0593 43 1 10.2106 -3.8166 -2.3249 44 1 7.7865 -3.6355 -2.4563 45 1 5.6344 -2.9246 -1.4308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548634019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:12 Heat of formation + Delta-G solvation = -31.618266 kcal Electronic energy + Delta-G solvation = -28189.517610 eV Core-core repulsion = 24364.886246 eV Total energy + Delta-G solvation = -3824.631364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20909 -40.90182 -39.33924 -37.75338 -36.86577 -35.72294 -34.44186 -34.20656 -31.45381 -30.81971 -30.20150 -28.02107 -27.45552 -25.24141 -25.11804 -24.15780 -23.26179 -21.68101 -20.78631 -19.84172 -19.14871 -19.04912 -18.06754 -17.74200 -17.01259 -16.95030 -16.48613 -15.99815 -15.92821 -15.72195 -15.66393 -15.24337 -14.97706 -14.84045 -14.50988 -14.33619 -14.27544 -13.72039 -13.52996 -13.36617 -13.20202 -13.02851 -12.86836 -12.67147 -12.63779 -12.33104 -12.26141 -11.92084 -11.82682 -11.77081 -11.70666 -11.55598 -11.50205 -11.04030 -10.87322 -10.44257 -9.71026 -9.52254 -9.27376 -8.39649 -6.46811 -0.86054 -0.44243 0.73694 1.31045 1.37330 1.42393 1.46788 2.02545 2.13665 2.25690 2.84165 2.95707 3.03668 3.35017 3.53791 3.60949 3.78556 3.87169 3.90128 3.98492 4.03740 4.18643 4.19246 4.44466 4.49727 4.59596 4.66193 4.68734 4.72651 4.74206 4.85764 4.87762 4.95332 5.01466 5.06273 5.08660 5.18172 5.23740 5.25137 5.28624 5.41360 5.45527 5.46323 5.64680 5.67693 6.05434 6.50256 6.62040 6.77208 6.84139 7.08130 7.20923 8.75036 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.004558 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.446633 B = 6141.062820 C = 8009.509759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C -0.146 4.146 4 C 0.124 3.876 5 N -0.580 5.580 6 C 0.195 3.805 7 C -0.542 4.542 8 H 0.046 0.954 9 C 0.042 3.958 10 N -0.922 5.922 11 Si 0.918 3.082 12 H -0.255 1.255 13 H -0.282 1.282 14 H -0.252 1.252 15 C 0.561 3.439 16 O -0.576 6.576 17 C -0.215 4.215 18 C 0.137 3.863 19 N -0.515 5.515 20 C 0.134 3.866 21 C -0.160 4.160 22 C 0.154 3.846 23 O -0.501 6.501 24 C -0.142 4.142 25 C -0.054 4.054 26 C -0.140 4.140 27 C 0.018 3.982 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.272 0.728 40 H 0.194 0.806 41 H 0.135 0.865 42 H 0.418 0.582 43 H 0.172 0.828 44 H 0.174 0.826 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 -4.649 -16.270 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.203 4.203 4 C 0.002 3.998 5 N -0.308 5.308 6 C 0.073 3.927 7 C -0.580 4.580 8 H 0.064 0.936 9 C -0.160 4.160 10 N -0.559 5.559 11 Si 0.741 3.259 12 H -0.179 1.179 13 H -0.208 1.208 14 H -0.176 1.176 15 C 0.349 3.651 16 O -0.458 6.458 17 C -0.220 4.220 18 C -0.034 4.034 19 N -0.224 5.224 20 C 0.013 3.987 21 C -0.180 4.180 22 C 0.107 3.893 23 O -0.316 6.316 24 C -0.160 4.160 25 C -0.073 4.073 26 C -0.142 4.142 27 C -0.009 4.009 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.210 0.790 41 H 0.153 0.847 42 H 0.279 0.721 43 H 0.190 0.810 44 H 0.191 0.809 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.826 -4.156 -15.945 17.477 hybrid contribution -0.010 0.018 0.534 0.534 sum 5.815 -4.138 -15.411 16.984 Atomic orbital electron populations 1.21706 0.92768 1.02128 1.02756 1.21407 0.97351 0.96413 0.97150 1.21891 1.00501 0.95536 1.02348 1.21581 0.78355 1.00851 0.99062 1.47792 1.07704 1.26455 1.48829 1.20365 0.91963 0.89070 0.91264 1.21317 1.30228 1.16045 0.90417 0.93583 1.25545 0.96719 0.99088 0.94663 1.69991 1.42239 1.40042 1.03656 0.86140 0.79289 0.80705 0.79738 1.17886 1.20804 1.17606 1.18135 0.87250 0.80715 0.78958 1.90665 1.64793 1.44521 1.45840 1.21014 0.94683 1.07414 0.98895 1.24927 0.89565 0.90440 0.98425 1.68185 1.09507 1.16874 1.27811 1.19287 0.94727 0.94603 0.90044 1.21303 0.91315 1.04650 1.00707 1.18490 0.83460 0.95105 0.92225 1.84716 1.15921 1.46397 1.84532 1.21498 0.94276 1.01165 0.99015 1.21283 0.94123 0.95011 0.96873 1.19028 0.93790 1.04129 0.97265 1.22116 0.92963 0.89191 0.96594 0.91997 0.90988 0.92606 0.92217 0.92377 0.94028 0.91114 0.91776 0.90122 0.93538 0.93181 0.91855 0.79026 0.84719 0.72056 0.81041 0.80864 0.81131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.19 71.98 0.66 -2.50 16 2 C -0.10 -3.06 3.08 -10.79 -0.03 -3.10 16 3 C -0.15 -4.08 8.43 71.98 0.61 -3.47 16 4 C 0.12 4.49 4.66 86.38 0.40 4.89 16 5 N -0.58 -23.79 2.23 -829.75 -1.85 -25.65 16 6 C 0.20 8.59 3.19 85.63 0.27 8.86 16 7 C -0.54 -28.32 7.60 25.60 0.19 -28.12 16 8 H 0.05 2.72 8.06 -2.91 -0.02 2.69 16 9 C 0.04 2.27 5.45 84.65 0.46 2.73 16 10 N -0.92 -53.65 13.96 21.45 0.30 -53.35 16 11 Si 0.92 41.25 27.47 68.60 1.88 43.13 16 12 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 15 C 0.56 23.21 7.41 86.74 0.64 23.85 16 16 O -0.58 -24.76 16.32 -3.94 -0.06 -24.82 16 17 C -0.21 -8.42 5.49 -20.00 -0.11 -8.53 16 18 C 0.14 5.97 8.56 85.42 0.73 6.70 16 19 N -0.51 -21.67 10.30 -187.74 -1.93 -23.60 16 20 C 0.13 4.64 6.60 40.23 0.27 4.91 16 21 C -0.16 -4.60 9.93 22.65 0.22 -4.37 16 22 C 0.15 3.25 6.69 22.55 0.15 3.40 16 23 O -0.50 -8.27 13.47 -91.07 -1.23 -9.49 16 24 C -0.14 -2.36 9.89 22.14 0.22 -2.15 16 25 C -0.05 -1.04 9.75 22.32 0.22 -0.82 16 26 C -0.14 -4.05 5.74 -21.27 -0.12 -4.17 16 27 C 0.02 0.55 9.46 23.01 0.22 0.77 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.30 6.05 -2.39 -0.01 1.28 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 2.38 7.66 -2.38 -0.02 2.37 16 36 H 0.08 3.01 7.84 -2.39 -0.02 3.00 16 37 H 0.05 1.95 5.54 -2.39 -0.01 1.94 16 38 H 0.05 2.27 3.27 -2.38 -0.01 2.27 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.19 9.41 3.43 -2.92 -0.01 9.40 16 41 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.42 2.54 9.06 -74.06 -0.67 1.87 16 43 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 45 H 0.17 4.35 7.94 -2.91 -0.02 4.33 16 Total: -1.00 -69.91 365.73 2.42 -67.50 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.31 Total: 27.42 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.00 Total: -1.12 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.49 Total: -102.60 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.29 Total: -34.32 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.88 Total: 43.13 kcal Total: -69.91 2.42 -67.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548634019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.880 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds