Wall clock time and date at job start Tue Mar 31 2020 15:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46794 * 2 1 4 4 C 1.53002 * 109.46666 * 240.00299 * 2 1 3 5 5 C 1.50700 * 109.47545 * 59.99932 * 4 2 1 6 6 H 1.08000 * 119.99836 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00342 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99842 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00449 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46861 * 90.00111 * 9 7 5 11 11 H 1.48493 * 109.47611 * 210.00032 * 9 7 5 12 12 H 1.48499 * 109.46944 * 330.00464 * 9 7 5 13 13 C 1.52998 * 109.47290 * 119.99895 * 2 1 3 14 14 N 1.46496 * 109.47110 * 300.00208 * 13 2 1 15 15 C 1.34783 * 119.99620 * 180.02562 * 14 13 2 16 16 O 1.21564 * 120.00114 * 359.97438 * 15 14 13 17 17 C 1.47678 * 119.99525 * 180.02562 * 15 14 13 18 18 C 1.40581 * 120.26591 * 0.02562 * 17 15 14 19 19 N 1.30808 * 121.51129 * 180.02562 * 18 17 15 20 20 C 1.33900 * 121.71751 * 359.95239 * 19 18 17 21 21 C 1.40310 * 120.72827 * 180.02562 * 20 19 18 22 22 C 1.37695 * 119.67902 * 180.02562 * 21 20 19 23 23 O 1.35781 * 119.59645 * 180.02562 * 22 21 20 24 24 C 1.39926 * 120.81032 * 359.97438 * 22 21 20 25 25 C 1.35929 * 120.76697 * 0.26361 * 24 22 21 26 26 C 1.40637 * 119.84142 * 359.49452 * 25 24 22 27 27 C 1.39112 * 120.26163 * 179.97438 * 17 15 14 28 28 H 1.08999 * 109.46529 * 299.99483 * 1 2 3 29 29 H 1.08995 * 109.47408 * 59.99981 * 1 2 3 30 30 H 1.08998 * 109.46565 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46979 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47103 * 300.00063 * 3 2 1 33 33 H 1.08994 * 109.46929 * 60.00218 * 3 2 1 34 34 H 1.09000 * 109.46712 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.46817 * 299.99341 * 4 2 1 36 36 H 0.96996 * 120.00480 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47058 * 180.02562 * 13 2 1 38 38 H 1.09004 * 109.46768 * 60.00230 * 13 2 1 39 39 H 0.96994 * 120.00291 * 359.97438 * 14 13 2 40 40 H 1.07997 * 119.24567 * 359.97438 * 18 17 15 41 41 H 1.08005 * 120.15932 * 0.04691 * 21 20 19 42 42 H 0.96697 * 113.99224 * 269.97480 * 23 22 21 43 43 H 1.08002 * 119.61410 * 179.97438 * 24 22 21 44 44 H 1.08007 * 120.08056 * 179.72036 * 25 24 22 45 45 H 1.08006 * 120.99147 * 359.97438 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3807 7 6 1.8710 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 2.2252 1.4410 -5.6613 11 1 1.0835 -0.5805 -6.3614 12 1 -0.0608 1.0352 -4.9613 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8779 -0.4909 3.6695 16 8 2.5768 -1.4792 3.7810 17 6 1.3851 0.2050 4.8753 18 6 0.5752 1.3475 4.7527 19 7 0.1258 1.9829 5.8041 20 6 0.4130 1.5777 7.0476 21 6 -0.0806 2.2748 8.1607 22 6 0.2287 1.8394 9.4299 23 8 -0.2504 2.5149 10.5059 24 6 1.0297 0.7087 9.6244 25 6 1.5255 0.0171 8.5644 26 6 1.2241 0.4325 7.2550 27 6 1.7179 -0.2655 6.1414 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2496 35 1 1.6767 -1.7488 -1.2492 36 1 2.8620 -1.8818 -4.7337 37 1 3.1301 -0.7208 1.2494 38 1 1.6768 -1.7489 1.2492 39 1 0.9944 0.7582 2.3564 40 1 0.3188 1.7093 3.7680 41 1 -0.7005 3.1484 8.0227 42 1 0.3315 3.2215 10.8176 43 1 1.2606 0.3845 10.6284 44 1 2.1464 -0.8515 8.7274 45 1 2.3375 -1.1417 6.2640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548705778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:45 Heat of formation + Delta-G solvation = -40.122806 kcal Electronic energy + Delta-G solvation = -26602.614782 eV Core-core repulsion = 22777.614633 eV Total energy + Delta-G solvation = -3825.000148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -41.36277 -39.78811 -38.69943 -37.16263 -36.11145 -33.77118 -33.61322 -32.16802 -30.72701 -30.09847 -27.19102 -26.55286 -26.47294 -24.56590 -24.39865 -22.81819 -22.60994 -21.00854 -19.51030 -18.74139 -17.95843 -17.57349 -17.00648 -16.37825 -16.13337 -15.50990 -15.39194 -15.23267 -14.95963 -14.51658 -14.46404 -14.21629 -13.92036 -13.58446 -13.43113 -13.14935 -12.87109 -12.75639 -12.50655 -12.23564 -12.08216 -11.90956 -11.29153 -11.21204 -11.04382 -10.87571 -10.77358 -10.66743 -10.46685 -10.34490 -10.27379 -9.92012 -9.73707 -9.22109 -9.16710 -8.95812 -8.88611 -8.62525 -8.37857 -6.01886 -4.03310 -0.21002 0.18677 1.40922 2.13899 3.02319 3.18889 3.29887 3.37166 3.38935 3.45577 3.71437 3.95424 4.16465 4.37414 4.41889 4.44403 4.45155 4.60572 4.75179 4.94519 5.22641 5.33602 5.34995 5.40017 5.48122 5.57114 5.60427 5.69967 5.77982 5.84064 5.98086 6.11681 6.16159 6.18008 6.23114 6.33825 6.45429 6.59477 6.68456 7.01685 7.03972 7.08063 7.08496 7.44425 7.56632 7.61649 7.73041 7.96474 8.21631 8.38286 9.01392 9.59996 11.09481 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033588 B = 0.002045 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.426943 B =13691.957569 C =14326.450721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.127 3.873 14 N -0.713 5.713 15 C 0.557 3.443 16 O -0.539 6.539 17 C -0.190 4.190 18 C 0.169 3.831 19 N -0.477 5.477 20 C 0.156 3.844 21 C -0.129 4.129 22 C 0.134 3.866 23 O -0.496 6.496 24 C -0.145 4.145 25 C -0.065 4.065 26 C -0.122 4.122 27 C 0.015 3.985 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.398 0.602 40 H 0.164 0.836 41 H 0.144 0.856 42 H 0.396 0.604 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 7.383 26.934 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.364 5.364 15 C 0.342 3.658 16 O -0.417 6.417 17 C -0.196 4.196 18 C -0.005 4.005 19 N -0.184 5.184 20 C 0.035 3.965 21 C -0.148 4.148 22 C 0.088 3.912 23 O -0.307 6.307 24 C -0.164 4.164 25 C -0.084 4.084 26 C -0.124 4.124 27 C -0.012 4.012 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.234 0.766 40 H 0.181 0.819 41 H 0.162 0.838 42 H 0.253 0.747 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.585 6.941 26.804 27.919 hybrid contribution 0.325 0.392 -0.887 1.023 sum -3.260 7.332 25.917 27.130 Atomic orbital electron populations 1.21781 0.95187 1.01288 1.00317 1.20929 0.95543 0.95903 0.94996 1.21780 1.00646 0.95829 1.00313 1.19089 0.96387 0.95243 0.89402 1.21173 1.31219 1.12100 0.90489 0.92223 1.25017 0.95336 0.95074 0.99121 1.69960 1.36938 1.22974 1.23468 0.86638 0.79188 0.79394 0.83028 1.20782 1.21356 1.19935 1.21716 0.99132 0.96134 0.82518 1.46144 1.52718 1.31799 1.05744 1.17922 0.80700 0.84113 0.83042 1.90787 1.38157 1.26029 1.86721 1.21085 1.03857 0.99577 0.95034 1.23120 0.89984 0.89515 0.97910 1.67993 1.22015 1.30567 0.97850 1.18725 0.94117 0.92018 0.91649 1.21240 1.02116 1.01582 0.89871 1.18432 0.94014 0.92599 0.86166 1.84793 1.48830 1.51489 1.45590 1.21211 0.98395 0.96491 1.00257 1.20966 0.97933 0.99098 0.90412 1.18855 1.01273 0.97572 0.94689 1.21976 0.92496 0.96718 0.89970 0.95294 0.91269 0.93249 0.93251 0.91282 0.95288 0.96293 0.96279 0.93028 0.91436 0.91428 0.76567 0.81919 0.83781 0.74720 0.84541 0.84206 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 2 C -0.07 -1.33 0.54 -154.50 -0.08 -1.42 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.32 7.65 -34.44 -0.26 -13.58 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 C 0.13 2.15 4.56 -4.04 -0.02 2.13 16 14 N -0.71 -9.83 4.91 -61.31 -0.30 -10.13 16 15 C 0.56 8.03 7.77 -12.40 -0.10 7.93 16 16 O -0.54 -9.59 16.38 5.31 0.09 -9.50 16 17 C -0.19 -2.25 5.89 -104.83 -0.62 -2.87 16 18 C 0.17 1.82 10.68 -17.10 -0.18 1.64 16 19 N -0.48 -5.55 10.30 -10.69 -0.11 -5.66 16 20 C 0.16 1.69 6.60 -84.80 -0.56 1.13 16 21 C -0.13 -1.18 9.93 -39.00 -0.39 -1.56 16 22 C 0.13 1.02 6.69 -39.15 -0.26 0.76 16 23 O -0.50 -3.07 13.47 -19.05 -0.26 -3.33 16 24 C -0.15 -0.97 9.89 -39.78 -0.39 -1.37 16 25 C -0.07 -0.48 9.75 -39.51 -0.39 -0.86 16 26 C -0.12 -1.20 5.74 -106.79 -0.61 -1.82 16 27 C 0.01 0.16 9.45 -38.44 -0.36 -0.20 16 28 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 29 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 33 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.40 4.56 4.19 -40.82 -0.17 4.39 16 40 H 0.16 1.38 6.37 -52.49 -0.33 1.05 16 41 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 42 H 0.40 0.48 9.06 45.56 0.41 0.90 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.16 1.49 7.70 -52.48 -0.40 1.09 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -33.14 371.24 -8.24 -41.38 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.13 Total: 2.66 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.84 Total: -11.62 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.33 Total: -41.14 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.17 Total: -12.83 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.14 -8.24 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548705778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.256 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.06 seconds