Wall clock time and date at job start Tue Mar 31 2020 15:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46794 * 2 1 4 4 C 1.53002 * 109.46666 * 240.00299 * 2 1 3 5 5 C 1.50700 * 109.47545 * 59.99932 * 4 2 1 6 6 H 1.08000 * 119.99836 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00342 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99842 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00449 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46861 * 90.00111 * 9 7 5 11 11 H 1.48493 * 109.47611 * 210.00032 * 9 7 5 12 12 H 1.48499 * 109.46944 * 330.00464 * 9 7 5 13 13 C 1.52998 * 109.47290 * 119.99895 * 2 1 3 14 14 N 1.46496 * 109.47110 * 300.00208 * 13 2 1 15 15 C 1.34783 * 119.99620 * 180.02562 * 14 13 2 16 16 O 1.21564 * 120.00114 * 359.97438 * 15 14 13 17 17 C 1.47678 * 119.99525 * 180.02562 * 15 14 13 18 18 C 1.40581 * 120.26591 * 0.02562 * 17 15 14 19 19 N 1.30808 * 121.51129 * 180.02562 * 18 17 15 20 20 C 1.33900 * 121.71751 * 359.95239 * 19 18 17 21 21 C 1.40310 * 120.72827 * 180.02562 * 20 19 18 22 22 C 1.37695 * 119.67902 * 180.02562 * 21 20 19 23 23 O 1.35781 * 119.59645 * 180.02562 * 22 21 20 24 24 C 1.39926 * 120.81032 * 359.97438 * 22 21 20 25 25 C 1.35929 * 120.76697 * 0.26361 * 24 22 21 26 26 C 1.40637 * 119.84142 * 359.49452 * 25 24 22 27 27 C 1.39112 * 120.26163 * 179.97438 * 17 15 14 28 28 H 1.08999 * 109.46529 * 299.99483 * 1 2 3 29 29 H 1.08995 * 109.47408 * 59.99981 * 1 2 3 30 30 H 1.08998 * 109.46565 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46979 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47103 * 300.00063 * 3 2 1 33 33 H 1.08994 * 109.46929 * 60.00218 * 3 2 1 34 34 H 1.09000 * 109.46712 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.46817 * 299.99341 * 4 2 1 36 36 H 0.96996 * 120.00480 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47058 * 180.02562 * 13 2 1 38 38 H 1.09004 * 109.46768 * 60.00230 * 13 2 1 39 39 H 0.96994 * 120.00291 * 359.97438 * 14 13 2 40 40 H 1.07997 * 119.24567 * 359.97438 * 18 17 15 41 41 H 1.08005 * 120.15932 * 0.04691 * 21 20 19 42 42 H 0.96697 * 113.99224 * 269.97480 * 23 22 21 43 43 H 1.08002 * 119.61410 * 179.97438 * 24 22 21 44 44 H 1.08007 * 120.08056 * 179.72036 * 25 24 22 45 45 H 1.08006 * 120.99147 * 359.97438 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3807 7 6 1.8710 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 2.2252 1.4410 -5.6613 11 1 1.0835 -0.5805 -6.3614 12 1 -0.0608 1.0352 -4.9613 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8779 -0.4909 3.6695 16 8 2.5768 -1.4792 3.7810 17 6 1.3851 0.2050 4.8753 18 6 0.5752 1.3475 4.7527 19 7 0.1258 1.9829 5.8041 20 6 0.4130 1.5777 7.0476 21 6 -0.0806 2.2748 8.1607 22 6 0.2287 1.8394 9.4299 23 8 -0.2504 2.5149 10.5059 24 6 1.0297 0.7087 9.6244 25 6 1.5255 0.0171 8.5644 26 6 1.2241 0.4325 7.2550 27 6 1.7179 -0.2655 6.1414 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2496 35 1 1.6767 -1.7488 -1.2492 36 1 2.8620 -1.8818 -4.7337 37 1 3.1301 -0.7208 1.2494 38 1 1.6768 -1.7489 1.2492 39 1 0.9944 0.7582 2.3564 40 1 0.3188 1.7093 3.7680 41 1 -0.7005 3.1484 8.0227 42 1 0.3315 3.2215 10.8176 43 1 1.2606 0.3845 10.6284 44 1 2.1464 -0.8515 8.7274 45 1 2.3375 -1.1417 6.2640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548705778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:44 Heat of formation + Delta-G solvation = -62.881330 kcal Electronic energy + Delta-G solvation = -26603.601665 eV Core-core repulsion = 22777.614633 eV Total energy + Delta-G solvation = -3825.987032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.12592 -40.84028 -39.42119 -38.60489 -36.74439 -35.30442 -34.42537 -33.94650 -31.42053 -30.87680 -29.07197 -27.94443 -27.74909 -25.57917 -25.25683 -24.40888 -23.29801 -22.08043 -20.39785 -19.80972 -18.97228 -18.49777 -18.30822 -17.70740 -16.97403 -16.68673 -16.53983 -16.36983 -15.93872 -15.68678 -15.39562 -15.21079 -14.93199 -14.74502 -14.70562 -14.37147 -14.11781 -13.91929 -13.77467 -13.43660 -13.18624 -12.86867 -12.71683 -12.59584 -12.54639 -12.31812 -12.21953 -11.96871 -11.84102 -11.56823 -11.52030 -11.43912 -10.97282 -10.84553 -10.58442 -10.49757 -10.17906 -9.79751 -9.32966 -8.12645 -6.19989 -0.93437 -0.51674 0.69064 1.40149 1.43652 1.43996 1.54192 2.05077 2.09611 2.45781 2.84929 2.95774 3.21943 3.32237 3.50077 3.54775 3.67343 3.76048 3.90659 3.97978 4.09656 4.15492 4.23499 4.29344 4.60778 4.64437 4.70577 4.73475 4.75850 4.82324 4.94904 4.97750 5.10006 5.14643 5.16140 5.23975 5.32717 5.36456 5.46300 5.53019 5.55277 5.57800 5.58682 5.82199 5.91790 6.31593 6.45747 6.69144 6.77025 6.95294 7.10119 7.47584 8.99682 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033588 B = 0.002045 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.426943 B =13691.957569 C =14326.450721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.124 4.124 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.260 1.260 13 C 0.141 3.859 14 N -0.701 5.701 15 C 0.562 3.438 16 O -0.578 6.578 17 C -0.208 4.208 18 C 0.169 3.831 19 N -0.495 5.495 20 C 0.141 3.859 21 C -0.152 4.152 22 C 0.152 3.848 23 O -0.503 6.503 24 C -0.142 4.142 25 C -0.062 4.062 26 C -0.135 4.135 27 C 0.021 3.979 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.070 0.930 34 H -0.013 1.013 35 H -0.013 1.013 36 H 0.259 0.741 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.412 0.588 40 H 0.184 0.816 41 H 0.145 0.855 42 H 0.419 0.581 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 9.294 29.430 31.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.182 4.182 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.184 1.184 13 C 0.017 3.983 14 N -0.354 5.354 15 C 0.349 3.651 16 O -0.460 6.460 17 C -0.213 4.213 18 C -0.005 4.005 19 N -0.203 5.203 20 C 0.020 3.980 21 C -0.171 4.171 22 C 0.105 3.895 23 O -0.318 6.318 24 C -0.160 4.160 25 C -0.080 4.080 26 C -0.137 4.137 27 C -0.006 4.006 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.251 0.749 40 H 0.200 0.800 41 H 0.163 0.837 42 H 0.281 0.719 43 H 0.183 0.817 44 H 0.184 0.816 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.825 8.913 29.330 31.032 hybrid contribution 0.707 -0.190 -1.420 1.597 sum -4.118 8.723 27.910 29.530 Atomic orbital electron populations 1.21727 0.93602 1.01118 1.01726 1.20721 0.96699 0.96340 0.92783 1.21727 1.00079 0.94612 1.01752 1.18970 0.94375 0.94243 0.92200 1.21598 1.30309 1.12047 0.91061 0.90901 1.25943 0.95779 0.95894 1.02712 1.70117 1.38835 1.24926 1.24026 0.85548 0.79168 0.78083 0.78858 1.20226 1.21700 1.18379 1.21301 0.98150 0.95521 0.83313 1.45880 1.52774 1.31986 1.04711 1.18256 0.79714 0.83472 0.83617 1.90765 1.40029 1.27894 1.87267 1.20827 1.05783 1.00618 0.94058 1.23344 0.89462 0.88971 0.98692 1.68018 1.22742 1.31110 0.98397 1.19036 0.94479 0.92592 0.91860 1.21326 1.03357 1.02214 0.90233 1.18546 0.92489 0.92489 0.85980 1.84731 1.49830 1.52393 1.44838 1.21524 0.97365 0.95651 1.01434 1.21280 0.97717 0.99685 0.89337 1.19002 1.01611 0.97528 0.95565 1.22146 0.91816 0.96626 0.89991 0.91163 0.92490 0.94283 0.94247 0.92463 0.91139 0.99418 0.99432 0.93236 0.92963 0.93008 0.74908 0.79958 0.83699 0.71945 0.81750 0.81643 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.05 71.99 0.58 -3.47 16 2 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.05 7.65 25.60 0.20 -26.86 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 7 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 8 N -0.94 -56.64 13.29 21.44 0.28 -56.36 16 9 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 13 C 0.14 4.83 4.56 86.38 0.39 5.22 16 14 N -0.70 -18.66 4.91 -466.14 -2.29 -20.95 16 15 C 0.56 16.00 7.77 86.74 0.67 16.68 16 16 O -0.58 -20.92 16.38 -3.92 -0.06 -20.99 16 17 C -0.21 -4.73 5.89 -20.00 -0.12 -4.85 16 18 C 0.17 3.41 10.68 85.42 0.91 4.33 16 19 N -0.49 -10.95 10.30 -187.74 -1.93 -12.89 16 20 C 0.14 2.88 6.60 40.23 0.27 3.14 16 21 C -0.15 -2.54 9.93 22.65 0.22 -2.32 16 22 C 0.15 1.91 6.69 22.55 0.15 2.06 16 23 O -0.50 -4.68 13.47 -91.09 -1.23 -5.91 16 24 C -0.14 -1.41 9.89 22.14 0.22 -1.20 16 25 C -0.06 -0.73 9.75 22.32 0.22 -0.51 16 26 C -0.14 -2.45 5.74 -21.27 -0.12 -2.57 16 27 C 0.02 0.42 9.45 23.01 0.22 0.64 16 28 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 29 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.99 6.62 -2.38 -0.02 1.98 16 33 H 0.07 1.68 6.86 -2.39 -0.02 1.66 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.41 8.43 4.19 -92.71 -0.39 8.04 16 40 H 0.18 2.66 6.37 -2.91 -0.02 2.64 16 41 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.42 -0.35 9.06 -74.06 -0.67 -1.02 16 43 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 44 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.16 2.97 7.70 -2.91 -0.02 2.94 16 Total: -1.00 -74.52 371.24 1.72 -72.79 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -0.02 Total: 12.24 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 4.95 Total: -13.34 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -3.94 Total: -90.19 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.29 Total: -26.89 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -74.52 1.72 -72.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548705778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.913 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds