Wall clock time and date at job start Tue Mar 31 2020 15:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 C 1.52995 * 109.46938 * 239.99851 * 2 1 3 5 5 C 1.50702 * 109.46920 * 120.00238 * 2 1 3 6 6 C 1.34180 * 126.11492 * 75.00428 * 5 2 1 7 7 O 1.35018 * 107.25756 * 180.02562 * 6 5 2 8 8 C 1.34201 * 107.73876 * 359.97438 * 7 6 5 9 9 N 1.38650 * 125.69561 * 179.74033 * 8 7 6 10 10 C 1.34778 * 120.00146 * 0.02562 * 9 8 7 11 11 O 1.21275 * 119.99759 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99995 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.46841 * 59.99968 * 12 10 9 14 14 C 1.50703 * 109.46851 * 300.00426 * 12 10 9 15 15 H 1.08004 * 120.00249 * 324.87944 * 14 12 10 16 16 C 1.37884 * 119.99703 * 144.88328 * 14 12 10 17 17 N 1.31511 * 120.00028 * 5.18999 * 16 14 12 18 18 Si 1.86800 * 119.99721 * 185.19158 * 16 14 12 19 19 H 1.48499 * 109.47409 * 59.99675 * 18 16 14 20 20 H 1.48506 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47353 * 299.99783 * 18 16 14 22 22 C 1.50696 * 109.47390 * 180.02562 * 12 10 9 23 23 C 1.38233 * 119.99981 * 66.00510 * 22 12 10 24 24 C 1.38231 * 119.99765 * 179.79084 * 23 22 12 25 25 C 1.38236 * 120.00299 * 0.44786 * 24 23 22 26 26 C 1.38235 * 119.99648 * 359.80798 * 25 24 23 27 27 C 1.38234 * 119.99824 * 246.28556 * 22 12 10 28 28 N 1.30952 * 108.60460 * 359.97438 * 8 7 6 29 29 H 1.09002 * 109.46937 * 299.99938 * 1 2 3 30 30 H 1.08995 * 109.47297 * 59.99443 * 1 2 3 31 31 H 1.08999 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47046 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47404 * 300.00492 * 3 2 1 34 34 H 1.09002 * 109.47078 * 60.00148 * 3 2 1 35 35 H 1.08996 * 109.47569 * 299.99916 * 4 2 1 36 36 H 1.09005 * 109.47304 * 60.00275 * 4 2 1 37 37 H 1.09005 * 109.47393 * 179.97438 * 4 2 1 38 38 H 1.08000 * 126.36711 * 359.97438 * 6 5 2 39 39 H 0.97001 * 119.99828 * 180.02562 * 9 8 7 40 40 H 0.97000 * 120.00059 * 180.02562 * 17 16 14 41 41 H 1.08000 * 119.99989 * 0.02562 * 23 22 12 42 42 H 1.08007 * 120.00360 * 180.27832 * 24 23 22 43 43 H 1.07994 * 120.00585 * 179.83447 * 25 24 23 44 44 H 1.08005 * 120.00197 * 180.02562 * 26 25 24 45 45 H 1.08006 * 120.00023 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 2.0314 -2.0368 1.4336 7 8 2.5632 -2.2553 2.6553 8 6 2.8820 -1.0627 3.1816 9 7 3.4496 -0.8548 4.4294 10 6 3.7279 -1.9053 5.2267 11 8 3.4822 -3.0324 4.8524 12 6 4.3443 -1.6793 6.5831 13 1 3.6796 -1.0602 7.1856 14 6 5.6709 -0.9827 6.4222 15 1 6.2991 -1.2069 5.5728 16 6 6.0828 -0.0592 7.3596 17 7 5.3677 0.1395 8.4453 18 14 7.6564 0.9098 7.0873 19 1 7.5421 1.6975 5.8336 20 1 7.8751 1.8306 8.2317 21 1 8.8028 -0.0278 6.9798 22 6 4.5535 -3.0056 7.2672 23 6 5.4602 -3.9133 6.7525 24 6 5.6552 -5.1282 7.3825 25 6 4.9369 -5.4392 8.5218 26 6 4.0264 -4.5337 9.0335 27 6 3.8345 -3.3169 8.4061 28 7 2.5628 -0.1278 2.3220 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.6715 -2.7895 0.7478 39 1 3.6465 0.0467 4.7286 40 1 5.6573 0.7895 9.1045 41 1 6.0189 -3.6717 5.8604 42 1 6.3669 -5.8356 6.9829 43 1 5.0873 -6.3894 9.0125 44 1 3.4654 -4.7764 9.9239 45 1 3.1231 -2.6094 8.8058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585109886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:59 Heat of formation + Delta-G solvation = 0.760663 kcal Electronic energy + Delta-G solvation = -27672.763132 eV Core-core repulsion = 23849.535824 eV Total energy + Delta-G solvation = -3823.227308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.01152 -39.51797 -37.95290 -37.26053 -34.68837 -33.81445 -33.33168 -31.24337 -30.01805 -28.93683 -27.62140 -27.36586 -27.00256 -24.25922 -23.01437 -22.38549 -21.67597 -20.91037 -19.99881 -18.66336 -17.63049 -16.96740 -16.48674 -16.29892 -16.01214 -15.77185 -14.83550 -14.61670 -14.34040 -14.22899 -14.10314 -14.05133 -13.69227 -13.28068 -13.15561 -12.55988 -12.48309 -12.40422 -12.17683 -11.83247 -11.75309 -11.73994 -11.28974 -11.21837 -11.18862 -11.07272 -10.98757 -10.96266 -10.51744 -10.37771 -10.18895 -10.14603 -10.05704 -9.59714 -9.14740 -8.82164 -8.02567 -7.86543 -7.73244 -6.39882 -4.49026 1.76987 2.24716 2.30815 2.55169 2.74696 3.16755 3.22231 3.24476 3.53685 3.60707 4.18975 4.48953 4.69596 4.74997 4.91434 4.97052 5.14023 5.25367 5.44826 5.50346 5.62768 5.65889 5.66143 5.71714 5.78929 5.82056 5.85771 5.88380 5.94413 5.97131 6.09718 6.16004 6.22200 6.36517 6.39849 6.40804 6.48010 6.70557 6.85135 6.88074 7.03058 7.29214 7.32177 7.43298 7.50037 7.61563 7.81272 7.95310 8.28508 8.52369 8.71549 9.18660 10.67964 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.003612 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.929221 B = 7750.637567 C = 9318.918918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.140 4.140 5 C 0.020 3.980 6 C -0.107 4.107 7 O -0.184 6.184 8 C 0.441 3.559 9 N -0.609 5.609 10 C 0.525 3.475 11 O -0.519 6.519 12 C 0.061 3.939 13 H 0.098 0.902 14 C -0.527 4.527 15 H 0.065 0.935 16 C 0.078 3.922 17 N -0.873 5.873 18 Si 0.901 3.099 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.015 4.015 23 C -0.085 4.085 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.115 4.115 28 N -0.514 5.514 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.208 0.792 39 H 0.442 0.558 40 H 0.270 0.730 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -0.939 -11.166 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 C -0.187 4.187 4 C -0.198 4.198 5 C -0.101 4.101 6 C -0.179 4.179 7 O -0.069 6.069 8 C 0.145 3.855 9 N -0.268 5.268 10 C 0.315 3.685 11 O -0.391 6.391 12 C 0.040 3.960 13 H 0.116 0.884 14 C -0.564 4.564 15 H 0.084 0.916 16 C -0.128 4.128 17 N -0.507 5.507 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.199 1.199 22 C -0.016 4.016 23 C -0.103 4.103 24 C -0.152 4.152 25 C -0.163 4.163 26 C -0.149 4.149 27 C -0.133 4.133 28 N -0.253 5.253 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.225 0.775 39 H 0.285 0.715 40 H 0.080 0.920 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.727 -1.097 -11.017 12.955 hybrid contribution 0.972 0.173 0.078 0.990 sum -5.755 -0.925 -10.939 12.395 Atomic orbital electron populations 1.21887 0.93481 1.02014 1.02129 1.18894 0.95181 0.95443 0.89170 1.21700 1.01446 0.93955 1.01614 1.21920 1.01572 1.00066 0.96216 1.21322 1.02189 0.90936 0.95622 1.24385 1.08278 0.98435 0.86775 1.84695 1.61719 1.32543 1.27933 1.21884 0.95100 0.78996 0.89536 1.43096 1.60075 1.14040 1.09619 1.22506 0.75033 0.82890 0.88066 1.90699 1.50715 1.22770 1.74942 1.18102 0.98752 0.92901 0.86276 0.88406 1.20644 1.02247 1.23190 1.10340 0.91633 1.24965 0.97385 0.96075 0.94375 1.69889 1.38656 1.33656 1.08503 0.86485 0.82879 0.79779 0.78088 1.19669 1.20924 1.19852 1.19913 0.93258 0.94099 0.94372 1.20829 0.97421 0.92971 0.99114 1.20957 1.00327 0.97229 0.96643 1.20829 0.98755 0.99144 0.97618 1.20915 0.99434 0.94770 0.99816 1.20982 0.99852 0.96065 0.96382 1.70643 1.22151 1.30292 1.02172 0.92269 0.92023 0.92552 0.92417 0.92926 0.91721 0.92489 0.91880 0.92253 0.77549 0.71503 0.91966 0.87086 0.87468 0.87580 0.87395 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.46 37.16 0.31 -0.99 16 2 C 0.01 0.15 0.95 -155.67 -0.15 0.01 16 3 C -0.13 -1.45 8.04 37.16 0.30 -1.15 16 4 C -0.14 -1.26 8.19 37.16 0.30 -0.95 16 5 C 0.02 0.29 5.53 -82.79 -0.46 -0.17 16 6 C -0.11 -1.59 11.43 29.30 0.34 -1.25 16 7 O -0.18 -3.55 9.09 -17.87 -0.16 -3.71 16 8 C 0.44 8.48 8.88 -86.60 -0.77 7.71 16 9 N -0.61 -11.87 5.29 -13.06 -0.07 -11.94 16 10 C 0.52 11.47 7.00 -10.99 -0.08 11.39 16 11 O -0.52 -12.41 14.17 -16.29 -0.23 -12.65 16 12 C 0.06 1.38 2.38 -94.08 -0.22 1.16 16 13 H 0.10 2.31 7.13 -51.93 -0.37 1.94 16 14 C -0.53 -12.63 7.46 -34.44 -0.26 -12.89 16 15 H 0.07 1.59 7.82 -52.48 -0.41 1.18 16 16 C 0.08 1.90 5.45 -17.82 -0.10 1.81 16 17 N -0.87 -22.05 12.84 55.43 0.71 -21.34 16 18 Si 0.90 19.32 29.54 -169.99 -5.02 14.30 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C -0.02 -0.35 4.30 -104.63 -0.45 -0.80 16 23 C -0.09 -1.86 8.31 -39.59 -0.33 -2.19 16 24 C -0.13 -2.57 10.05 -39.58 -0.40 -2.97 16 25 C -0.15 -2.63 10.05 -39.58 -0.40 -3.02 16 26 C -0.13 -2.46 10.05 -39.58 -0.40 -2.85 16 27 C -0.11 -2.41 9.67 -39.58 -0.38 -2.80 16 28 N -0.51 -9.04 10.70 -10.57 -0.11 -9.15 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.06 0.45 7.50 -51.93 -0.39 0.06 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.21 2.21 7.65 -52.49 -0.40 1.81 16 39 H 0.44 7.95 8.70 -40.82 -0.36 7.60 16 40 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 41 H 0.11 2.46 7.89 -52.49 -0.41 2.04 16 42 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 45 H 0.11 2.29 7.96 -52.48 -0.42 1.87 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -28.72 381.37 -8.81 -37.53 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.54 Total: 11.16 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -3.13 Total: -9.95 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.53 Total: -42.43 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.39 Total: -16.36 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.72 -8.81 -37.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585109886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.292 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds