Wall clock time and date at job start Tue Mar 31 2020 15:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 C 1.52995 * 109.46938 * 239.99851 * 2 1 3 5 5 C 1.50702 * 109.46920 * 120.00238 * 2 1 3 6 6 C 1.34180 * 126.11492 * 75.00428 * 5 2 1 7 7 O 1.35018 * 107.25756 * 180.02562 * 6 5 2 8 8 C 1.34201 * 107.73876 * 359.97438 * 7 6 5 9 9 N 1.38650 * 125.69561 * 179.74033 * 8 7 6 10 10 C 1.34778 * 120.00146 * 0.02562 * 9 8 7 11 11 O 1.21275 * 119.99759 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99995 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.46841 * 59.99968 * 12 10 9 14 14 C 1.50703 * 109.46851 * 300.00426 * 12 10 9 15 15 H 1.08004 * 120.00249 * 324.87944 * 14 12 10 16 16 C 1.37884 * 119.99703 * 144.88328 * 14 12 10 17 17 N 1.31511 * 120.00028 * 5.18999 * 16 14 12 18 18 Si 1.86800 * 119.99721 * 185.19158 * 16 14 12 19 19 H 1.48499 * 109.47409 * 59.99675 * 18 16 14 20 20 H 1.48506 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47353 * 299.99783 * 18 16 14 22 22 C 1.50696 * 109.47390 * 180.02562 * 12 10 9 23 23 C 1.38233 * 119.99981 * 66.00510 * 22 12 10 24 24 C 1.38231 * 119.99765 * 179.79084 * 23 22 12 25 25 C 1.38236 * 120.00299 * 0.44786 * 24 23 22 26 26 C 1.38235 * 119.99648 * 359.80798 * 25 24 23 27 27 C 1.38234 * 119.99824 * 246.28556 * 22 12 10 28 28 N 1.30952 * 108.60460 * 359.97438 * 8 7 6 29 29 H 1.09002 * 109.46937 * 299.99938 * 1 2 3 30 30 H 1.08995 * 109.47297 * 59.99443 * 1 2 3 31 31 H 1.08999 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47046 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47404 * 300.00492 * 3 2 1 34 34 H 1.09002 * 109.47078 * 60.00148 * 3 2 1 35 35 H 1.08996 * 109.47569 * 299.99916 * 4 2 1 36 36 H 1.09005 * 109.47304 * 60.00275 * 4 2 1 37 37 H 1.09005 * 109.47393 * 179.97438 * 4 2 1 38 38 H 1.08000 * 126.36711 * 359.97438 * 6 5 2 39 39 H 0.97001 * 119.99828 * 180.02562 * 9 8 7 40 40 H 0.97000 * 120.00059 * 180.02562 * 17 16 14 41 41 H 1.08000 * 119.99989 * 0.02562 * 23 22 12 42 42 H 1.08007 * 120.00360 * 180.27832 * 24 23 22 43 43 H 1.07994 * 120.00585 * 179.83447 * 25 24 23 44 44 H 1.08005 * 120.00197 * 180.02562 * 26 25 24 45 45 H 1.08006 * 120.00023 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 2.0314 -2.0368 1.4336 7 8 2.5632 -2.2553 2.6553 8 6 2.8820 -1.0627 3.1816 9 7 3.4496 -0.8548 4.4294 10 6 3.7279 -1.9053 5.2267 11 8 3.4822 -3.0324 4.8524 12 6 4.3443 -1.6793 6.5831 13 1 3.6796 -1.0602 7.1856 14 6 5.6709 -0.9827 6.4222 15 1 6.2991 -1.2069 5.5728 16 6 6.0828 -0.0592 7.3596 17 7 5.3677 0.1395 8.4453 18 14 7.6564 0.9098 7.0873 19 1 7.5421 1.6975 5.8336 20 1 7.8751 1.8306 8.2317 21 1 8.8028 -0.0278 6.9798 22 6 4.5535 -3.0056 7.2672 23 6 5.4602 -3.9133 6.7525 24 6 5.6552 -5.1282 7.3825 25 6 4.9369 -5.4392 8.5218 26 6 4.0264 -4.5337 9.0335 27 6 3.8345 -3.3169 8.4061 28 7 2.5628 -0.1278 2.3220 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.6715 -2.7895 0.7478 39 1 3.6465 0.0467 4.7286 40 1 5.6573 0.7895 9.1045 41 1 6.0189 -3.6717 5.8604 42 1 6.3669 -5.8356 6.9829 43 1 5.0873 -6.3894 9.0125 44 1 3.4654 -4.7764 9.9239 45 1 3.1231 -2.6094 8.8058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585109886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:58 Heat of formation + Delta-G solvation = -14.822991 kcal Electronic energy + Delta-G solvation = -27673.438890 eV Core-core repulsion = 23849.535824 eV Total energy + Delta-G solvation = -3823.903066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.36718 -41.19233 -39.50050 -38.25256 -36.26589 -35.60090 -34.67928 -32.98261 -31.56725 -30.25593 -29.10844 -28.09659 -28.00209 -26.05869 -24.27422 -23.84037 -23.23589 -22.35787 -21.48792 -19.99028 -19.05993 -18.73827 -17.96516 -17.79607 -17.54193 -17.17720 -16.42418 -15.99099 -15.79691 -15.75477 -15.36019 -15.07168 -14.93918 -14.85956 -14.34076 -14.10712 -14.03331 -13.58792 -13.35593 -13.20277 -12.95743 -12.94294 -12.77542 -12.63556 -12.53383 -12.26782 -12.14450 -12.05327 -12.00177 -11.91186 -11.74346 -11.41373 -11.38506 -11.33793 -10.92955 -10.68384 -9.58770 -9.33248 -9.21122 -8.27341 -6.41039 0.37929 0.70209 0.73738 1.11960 1.34102 1.44454 1.46542 1.52895 1.95991 2.25086 2.39351 3.01223 3.19726 3.41392 3.76731 4.05263 4.09829 4.19801 4.23014 4.26920 4.28901 4.40000 4.43595 4.46213 4.75844 4.81559 4.81807 4.84538 4.91553 4.91991 4.96652 5.01516 5.05438 5.06953 5.19672 5.27330 5.31097 5.39568 5.44816 5.45910 5.49362 5.59185 5.75117 5.77183 5.84485 5.93854 6.14638 6.37657 6.63834 6.86180 7.01214 7.28162 8.80299 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.003612 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.929221 B = 7750.637567 C = 9318.918918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.013 3.987 3 C -0.128 4.128 4 C -0.137 4.137 5 C 0.010 3.990 6 C -0.101 4.101 7 O -0.209 6.209 8 C 0.408 3.592 9 N -0.604 5.604 10 C 0.530 3.470 11 O -0.544 6.544 12 C 0.065 3.935 13 H 0.082 0.918 14 C -0.529 4.529 15 H 0.055 0.945 16 C 0.042 3.958 17 N -0.898 5.898 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.277 1.277 22 C -0.042 4.042 23 C -0.111 4.111 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.137 4.137 28 N -0.515 5.515 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.249 0.751 39 H 0.446 0.554 40 H 0.271 0.729 41 H 0.095 0.905 42 H 0.136 0.864 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.125 -1.950 -12.510 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 C -0.186 4.186 4 C -0.195 4.195 5 C -0.110 4.110 6 C -0.171 4.171 7 O -0.094 6.094 8 C 0.113 3.887 9 N -0.263 5.263 10 C 0.320 3.680 11 O -0.418 6.418 12 C 0.044 3.956 13 H 0.099 0.901 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.161 4.161 17 N -0.533 5.533 18 Si 0.779 3.221 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.043 4.043 23 C -0.129 4.129 24 C -0.153 4.153 25 C -0.158 4.158 26 C -0.147 4.147 27 C -0.155 4.155 28 N -0.254 5.254 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.265 0.735 39 H 0.289 0.711 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.153 0.847 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.185 -2.089 -12.383 14.468 hybrid contribution 1.031 0.448 0.395 1.191 sum -6.154 -1.641 -11.988 13.575 Atomic orbital electron populations 1.21878 0.91921 1.02810 1.02552 1.19126 0.96324 0.95052 0.88319 1.21693 1.00420 0.94398 1.02072 1.21921 1.00853 1.00953 0.95726 1.22056 1.01628 0.91353 0.95959 1.25288 1.06556 0.99673 0.85575 1.84678 1.62131 1.32961 1.29661 1.21940 0.97331 0.79570 0.89865 1.42787 1.59950 1.13555 1.10034 1.22263 0.74805 0.82929 0.88013 1.90658 1.52016 1.23677 1.75495 1.17975 0.97882 0.93173 0.86596 0.90062 1.20696 1.02623 1.23387 1.09926 0.92660 1.25544 0.99711 0.96756 0.94128 1.69975 1.39922 1.34300 1.09118 0.85661 0.79689 0.78551 0.78179 1.19028 1.20545 1.20277 1.19995 0.94600 0.94339 0.95394 1.20862 0.98108 0.94530 0.99433 1.21323 1.00675 0.96488 0.96817 1.21302 0.97261 1.00417 0.96777 1.21325 0.99341 0.93600 1.00398 1.21154 1.00313 0.97546 0.96531 1.70653 1.21513 1.30405 1.02789 0.93977 0.89489 0.91602 0.93988 0.90132 0.93597 0.91074 0.89510 0.93430 0.73490 0.71121 0.91977 0.88716 0.84660 0.83446 0.84052 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.46 71.98 0.61 -1.59 16 2 C 0.01 0.25 0.95 -52.93 -0.05 0.20 16 3 C -0.13 -2.72 8.04 71.98 0.58 -2.14 16 4 C -0.14 -2.04 8.19 71.98 0.59 -1.45 16 5 C 0.01 0.29 5.53 41.20 0.23 0.52 16 6 C -0.10 -2.88 11.43 66.89 0.76 -2.12 16 7 O -0.21 -8.20 9.09 12.23 0.11 -8.09 16 8 C 0.41 16.28 8.88 178.94 1.59 17.86 16 9 N -0.60 -24.94 5.29 -423.80 -2.24 -27.18 16 10 C 0.53 24.46 7.00 87.66 0.61 25.07 16 11 O -0.54 -27.24 14.17 17.88 0.25 -26.98 16 12 C 0.06 3.12 2.38 -13.03 -0.03 3.09 16 13 H 0.08 4.09 7.13 -2.39 -0.02 4.08 16 14 C -0.53 -26.44 7.46 25.60 0.19 -26.25 16 15 H 0.06 2.82 7.82 -2.91 -0.02 2.79 16 16 C 0.04 2.10 5.45 84.66 0.46 2.56 16 17 N -0.90 -46.62 12.84 21.45 0.28 -46.34 16 18 Si 0.95 40.27 29.54 68.60 2.03 42.29 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 22 C -0.04 -1.98 4.30 -19.87 -0.09 -2.07 16 23 C -0.11 -4.98 8.31 22.27 0.18 -4.79 16 24 C -0.14 -5.03 10.05 22.27 0.22 -4.81 16 25 C -0.14 -4.67 10.05 22.27 0.22 -4.45 16 26 C -0.13 -4.60 10.05 22.27 0.22 -4.38 16 27 C -0.14 -5.87 9.67 22.27 0.22 -5.66 16 28 N -0.51 -18.45 10.70 -301.67 -3.23 -21.67 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.12 8.09 -2.39 -0.02 1.11 16 35 H 0.07 0.86 7.50 -2.39 -0.02 0.84 16 36 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.25 4.58 7.65 -2.91 -0.02 4.55 16 39 H 0.45 17.15 8.70 -92.71 -0.81 16.34 16 40 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 41 H 0.09 4.41 7.89 -2.91 -0.02 4.39 16 42 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 43 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 44 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 45 H 0.11 4.65 7.96 -2.91 -0.02 4.63 16 Total: -1.00 -64.57 381.37 3.92 -60.66 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.19 Total: 37.71 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 6.53 Total: -10.39 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -5.19 Total: -95.20 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: 0.36 Total: -35.07 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -64.57 3.92 -60.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585109886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.833 kcal (2) G-P(sol) polarization free energy of solvation -64.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds