Wall clock time and date at job start Tue Mar 31 2020 15:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 C 1.52995 * 109.47303 * 239.99908 * 2 1 3 5 5 C 1.50699 * 109.47222 * 60.00234 * 4 2 1 6 6 H 1.07999 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00103 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00087 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47000 * 59.99580 * 9 7 5 11 11 H 1.48496 * 109.47329 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47123 * 300.00062 * 9 7 5 13 13 C 1.52997 * 109.47085 * 119.99606 * 2 1 3 14 14 N 1.46501 * 109.47236 * 300.00596 * 13 2 1 15 15 C 1.39507 * 120.00225 * 180.02562 * 14 13 2 16 16 C 1.36435 * 120.01434 * 359.97438 * 15 14 13 17 17 C 1.40497 * 120.82300 * 180.02562 * 16 15 14 18 18 C 1.47683 * 119.76513 * 180.02562 * 17 16 15 19 19 O 1.21471 * 119.99700 * 0.02562 * 18 17 16 20 20 O 1.34720 * 120.00118 * 180.02562 * 18 17 16 21 21 C 1.38651 * 120.47249 * 0.29279 * 17 16 15 22 22 C 1.40172 * 119.54934 * 359.46404 * 21 17 16 23 23 C 1.40921 * 121.19513 * 180.21806 * 22 21 17 24 24 C 1.36574 * 118.15545 * 180.27515 * 23 22 21 25 25 C 1.39327 * 119.89227 * 359.97438 * 24 23 22 26 26 N 1.31114 * 121.75201 * 0.02562 * 25 24 23 27 27 C 1.33541 * 121.40994 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47826 * 300.00452 * 1 2 3 29 29 H 1.09010 * 109.47224 * 60.00118 * 1 2 3 30 30 H 1.08996 * 109.47199 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47353 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47181 * 300.00298 * 3 2 1 33 33 H 1.09008 * 109.47496 * 59.99699 * 3 2 1 34 34 H 1.09007 * 109.47035 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47167 * 299.99726 * 4 2 1 36 36 H 0.97004 * 120.00429 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47290 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.47095 * 60.00451 * 13 2 1 39 39 H 0.96998 * 120.00265 * 359.97438 * 14 13 2 40 40 H 1.07998 * 119.58275 * 0.02562 * 16 15 14 41 41 H 0.96700 * 117.00126 * 180.02562 * 20 18 17 42 42 H 1.07996 * 120.22607 * 179.70304 * 21 17 16 43 43 H 1.07998 * 120.92747 * 0.30009 * 23 22 21 44 44 H 1.07997 * 120.05154 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.12342 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3807 7 6 1.8705 -0.4822 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2473 0.3979 -5.2572 10 1 1.7422 1.7981 -5.2577 11 1 1.7424 -0.3020 -6.4697 12 1 -0.2378 0.3979 -5.2567 13 6 2.0400 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4454 15 6 1.8889 -0.5068 3.7125 16 6 2.6734 -1.6160 3.8382 17 6 3.0231 -2.1105 5.1058 18 6 3.8740 -3.3127 5.2147 19 8 4.2693 -3.8699 4.2103 20 8 4.2118 -3.7913 6.4278 21 6 2.5706 -1.4813 6.2555 22 6 1.7679 -0.3373 6.1470 23 6 1.2927 0.3322 7.2924 24 6 0.5104 1.4375 7.1147 25 6 0.2048 1.8721 5.8267 26 7 0.6491 1.2462 4.7637 27 6 1.4183 0.1594 4.8667 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9565 0.8900 34 1 3.1301 -0.7208 -1.2494 35 1 1.6767 -1.7489 -1.2491 36 1 2.8609 -1.8829 -4.7336 37 1 3.1299 -0.7208 1.2495 38 1 1.6767 -1.7488 1.2493 39 1 0.9941 0.7583 2.3564 40 1 3.0299 -2.1200 2.9520 41 1 4.7707 -4.5802 6.4485 42 1 2.8379 -1.8677 7.2279 43 1 1.5406 -0.0187 8.2833 44 1 0.1294 1.9738 7.9712 45 1 -0.4145 2.7478 5.7006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590656317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:17 Heat of formation + Delta-G solvation = -50.039190 kcal Electronic energy + Delta-G solvation = -27318.342405 eV Core-core repulsion = 23492.912250 eV Total energy + Delta-G solvation = -3825.430155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.15719 -40.08462 -38.26690 -36.81023 -36.16963 -34.85271 -32.80905 -32.00941 -30.95174 -29.03501 -26.96423 -26.48079 -26.09363 -25.41251 -24.01358 -22.78481 -22.14712 -21.30363 -18.80398 -18.30336 -17.95379 -17.52418 -17.08244 -16.29841 -15.84443 -15.76758 -15.43812 -14.94828 -14.79736 -14.50969 -14.24725 -14.09857 -13.68318 -13.37692 -13.24949 -12.93170 -12.75917 -12.67528 -12.48812 -12.04969 -11.95180 -11.61532 -11.53253 -11.26936 -10.99753 -10.85514 -10.83825 -10.76316 -10.60547 -10.38539 -10.25673 -9.88358 -9.73498 -9.41747 -9.19993 -9.02247 -8.93980 -8.35314 -7.14669 -5.99517 -4.00753 0.11110 0.55004 1.70849 2.25952 2.80904 3.05672 3.32799 3.38010 3.39294 3.53245 3.98727 4.05018 4.45740 4.47532 4.62191 4.71137 4.72904 5.04126 5.15862 5.18730 5.35945 5.40212 5.46062 5.58110 5.60491 5.74377 5.77973 5.94623 5.99116 6.12175 6.18434 6.20824 6.24864 6.28538 6.34343 6.39361 6.58094 6.65430 6.66377 7.04811 7.08251 7.10061 7.30772 7.62955 7.72374 7.74906 7.75557 7.89749 7.98865 8.41174 9.03628 9.62349 11.11924 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.003020 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.598827 B = 9270.800685 C =11118.034961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.122 3.878 14 N -0.708 5.708 15 C 0.254 3.746 16 C -0.179 4.179 17 C -0.054 4.054 18 C 0.524 3.476 19 O -0.503 6.503 20 O -0.514 6.514 21 C -0.115 4.115 22 C -0.070 4.070 23 C -0.063 4.063 24 C -0.167 4.167 25 C 0.117 3.883 26 N -0.463 5.463 27 C 0.097 3.903 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.412 0.588 40 H 0.145 0.855 41 H 0.413 0.587 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 2.562 25.884 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.070 4.070 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.001 4.001 14 N -0.332 5.332 15 C 0.143 3.857 16 C -0.206 4.206 17 C -0.056 4.056 18 C 0.368 3.632 19 O -0.391 6.391 20 O -0.326 6.326 21 C -0.136 4.136 22 C -0.073 4.073 23 C -0.090 4.090 24 C -0.187 4.187 25 C -0.056 4.056 26 N -0.171 5.171 27 C -0.028 4.028 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.250 0.750 40 H 0.162 0.838 41 H 0.272 0.728 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.985 2.791 24.299 24.539 hybrid contribution 0.109 -0.151 -0.080 0.203 sum -1.876 2.640 24.218 24.434 Atomic orbital electron populations 1.21755 0.95173 1.01127 1.00388 1.20866 0.95580 0.95899 0.94678 1.21756 1.00430 0.95866 1.00387 1.19089 0.96313 0.95185 0.89472 1.21143 1.31253 1.12106 0.90517 0.92308 1.25004 0.95300 0.95065 0.99061 1.69949 1.36897 1.23005 1.23566 0.86711 0.79166 0.79781 0.82651 1.20318 1.21388 1.20313 1.21820 0.98651 0.96116 0.83483 1.45150 1.54229 1.32145 1.01696 1.17134 0.92155 0.91492 0.84900 1.20126 1.04593 0.98651 0.97229 1.18631 0.99025 0.93801 0.94109 1.20954 0.78048 0.83667 0.80553 1.90929 1.51906 1.58616 1.37651 1.84549 1.66923 1.47934 1.33193 1.21159 0.99058 0.95258 0.98172 1.18475 0.98955 0.96591 0.93256 1.21447 0.95137 0.94359 0.98041 1.21877 0.99873 0.97943 0.98994 1.22858 0.96661 0.98353 0.87748 1.67757 1.08884 1.06635 1.33824 1.18610 0.98540 0.94215 0.91446 0.95029 0.91458 0.93431 0.93433 0.91451 0.95037 0.96347 0.96346 0.92973 0.91885 0.91880 0.74995 0.83756 0.72822 0.84257 0.84230 0.84565 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 5 C -0.51 -13.70 7.65 -34.44 -0.26 -13.97 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.12 2.10 3.78 -4.04 -0.02 2.08 16 14 N -0.71 -10.89 5.12 -58.66 -0.30 -11.19 16 15 C 0.25 3.75 6.65 -83.84 -0.56 3.20 16 16 C -0.18 -2.62 8.78 -39.38 -0.35 -2.96 16 17 C -0.05 -0.69 5.87 -105.04 -0.62 -1.30 16 18 C 0.52 6.50 8.26 34.59 0.29 6.78 16 19 O -0.50 -7.91 17.09 -19.24 -0.33 -8.24 16 20 O -0.51 -4.32 12.63 -40.55 -0.51 -4.83 16 21 C -0.11 -1.23 9.36 -38.70 -0.36 -1.60 16 22 C -0.07 -0.80 5.74 -106.83 -0.61 -1.41 16 23 C -0.06 -0.53 9.89 -39.17 -0.39 -0.91 16 24 C -0.17 -1.25 10.03 -39.78 -0.40 -1.65 16 25 C 0.12 1.10 11.15 -17.45 -0.19 0.90 16 26 N -0.46 -5.96 9.56 -10.81 -0.10 -6.06 16 27 C 0.10 1.32 6.62 -84.62 -0.56 0.76 16 28 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 29 H 0.07 1.32 6.62 -51.92 -0.34 0.98 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 33 H 0.03 0.50 6.86 -51.92 -0.36 0.14 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 38 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 39 H 0.41 6.29 5.52 -40.82 -0.23 6.06 16 40 H 0.14 2.27 6.15 -52.49 -0.32 1.95 16 41 H 0.41 1.64 9.11 45.56 0.42 2.05 16 42 H 0.14 1.15 7.57 -52.49 -0.40 0.76 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -32.70 370.35 -8.82 -41.52 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.15 Total: 5.94 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.72 Total: -13.29 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.33 Total: -43.04 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.84 Total: -13.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.70 -8.82 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.519 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds