Wall clock time and date at job start Tue Mar 31 2020 15:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 C 1.52995 * 109.47303 * 239.99908 * 2 1 3 5 5 C 1.50699 * 109.47222 * 60.00234 * 4 2 1 6 6 H 1.07999 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00103 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00087 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47000 * 59.99580 * 9 7 5 11 11 H 1.48496 * 109.47329 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47123 * 300.00062 * 9 7 5 13 13 C 1.52997 * 109.47085 * 119.99606 * 2 1 3 14 14 N 1.46501 * 109.47236 * 300.00596 * 13 2 1 15 15 C 1.39507 * 120.00225 * 180.02562 * 14 13 2 16 16 C 1.36435 * 120.01434 * 359.97438 * 15 14 13 17 17 C 1.40497 * 120.82300 * 180.02562 * 16 15 14 18 18 C 1.47683 * 119.76513 * 180.02562 * 17 16 15 19 19 O 1.21471 * 119.99700 * 0.02562 * 18 17 16 20 20 O 1.34720 * 120.00118 * 180.02562 * 18 17 16 21 21 C 1.38651 * 120.47249 * 0.29279 * 17 16 15 22 22 C 1.40172 * 119.54934 * 359.46404 * 21 17 16 23 23 C 1.40921 * 121.19513 * 180.21806 * 22 21 17 24 24 C 1.36574 * 118.15545 * 180.27515 * 23 22 21 25 25 C 1.39327 * 119.89227 * 359.97438 * 24 23 22 26 26 N 1.31114 * 121.75201 * 0.02562 * 25 24 23 27 27 C 1.33541 * 121.40994 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47826 * 300.00452 * 1 2 3 29 29 H 1.09010 * 109.47224 * 60.00118 * 1 2 3 30 30 H 1.08996 * 109.47199 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47353 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47181 * 300.00298 * 3 2 1 33 33 H 1.09008 * 109.47496 * 59.99699 * 3 2 1 34 34 H 1.09007 * 109.47035 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47167 * 299.99726 * 4 2 1 36 36 H 0.97004 * 120.00429 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47290 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.47095 * 60.00451 * 13 2 1 39 39 H 0.96998 * 120.00265 * 359.97438 * 14 13 2 40 40 H 1.07998 * 119.58275 * 0.02562 * 16 15 14 41 41 H 0.96700 * 117.00126 * 180.02562 * 20 18 17 42 42 H 1.07996 * 120.22607 * 179.70304 * 21 17 16 43 43 H 1.07998 * 120.92747 * 0.30009 * 23 22 21 44 44 H 1.07997 * 120.05154 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.12342 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3807 7 6 1.8705 -0.4822 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2473 0.3979 -5.2572 10 1 1.7422 1.7981 -5.2577 11 1 1.7424 -0.3020 -6.4697 12 1 -0.2378 0.3979 -5.2567 13 6 2.0400 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4454 15 6 1.8889 -0.5068 3.7125 16 6 2.6734 -1.6160 3.8382 17 6 3.0231 -2.1105 5.1058 18 6 3.8740 -3.3127 5.2147 19 8 4.2693 -3.8699 4.2103 20 8 4.2118 -3.7913 6.4278 21 6 2.5706 -1.4813 6.2555 22 6 1.7679 -0.3373 6.1470 23 6 1.2927 0.3322 7.2924 24 6 0.5104 1.4375 7.1147 25 6 0.2048 1.8721 5.8267 26 7 0.6491 1.2462 4.7637 27 6 1.4183 0.1594 4.8667 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9565 0.8900 34 1 3.1301 -0.7208 -1.2494 35 1 1.6767 -1.7489 -1.2491 36 1 2.8609 -1.8829 -4.7336 37 1 3.1299 -0.7208 1.2495 38 1 1.6767 -1.7488 1.2493 39 1 0.9941 0.7583 2.3564 40 1 3.0299 -2.1200 2.9520 41 1 4.7707 -4.5802 6.4485 42 1 2.8379 -1.8677 7.2279 43 1 1.5406 -0.0187 8.2833 44 1 0.1294 1.9738 7.9712 45 1 -0.4145 2.7478 5.7006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590656317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:12 Heat of formation + Delta-G solvation = -70.903937 kcal Electronic energy + Delta-G solvation = -27319.247169 eV Core-core repulsion = 23492.912250 eV Total energy + Delta-G solvation = -3826.334918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 5.45 seconds Orbital eigenvalues (eV) -42.03396 -40.98541 -39.57905 -37.89972 -37.06923 -36.03893 -34.49456 -33.23218 -31.80486 -30.21385 -28.83783 -28.02204 -27.45257 -26.25704 -25.22730 -24.33058 -22.98582 -22.32036 -20.09729 -19.29031 -18.87221 -18.64606 -18.38867 -17.95022 -16.71147 -16.68669 -16.62203 -16.26663 -15.98687 -15.97907 -15.29610 -15.25521 -14.87760 -14.56306 -14.24864 -14.19733 -14.15959 -13.97240 -13.84164 -13.30970 -13.08740 -12.80932 -12.77006 -12.67739 -12.49328 -12.48458 -12.36983 -12.21712 -12.00815 -11.88074 -11.74706 -11.50116 -11.03833 -10.90107 -10.52330 -10.47522 -10.39763 -9.87138 -8.21512 -8.15501 -6.23506 -0.72801 -0.27610 0.89581 1.33507 1.40630 1.42937 1.50256 1.97173 2.19152 2.36579 2.46268 3.12922 3.18598 3.22883 3.74587 3.83710 3.89754 3.92861 4.03636 4.10129 4.17891 4.20286 4.38063 4.46397 4.61811 4.64815 4.67812 4.68485 4.78458 4.91407 4.99770 5.06619 5.07213 5.10526 5.24263 5.29492 5.37891 5.44120 5.45697 5.46974 5.52644 5.56778 5.75908 5.80011 5.87095 6.13083 6.30992 6.73795 6.90674 6.95864 6.97000 7.44046 8.96810 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.003020 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.598827 B = 9270.800685 C =11118.034961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.063 4.063 3 C -0.118 4.118 4 C 0.043 3.957 5 C -0.517 4.517 6 H 0.070 0.930 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.142 3.858 14 N -0.713 5.713 15 C 0.230 3.770 16 C -0.193 4.193 17 C -0.085 4.085 18 C 0.533 3.467 19 O -0.550 6.550 20 O -0.496 6.496 21 C -0.078 4.078 22 C -0.090 4.090 23 C -0.054 4.054 24 C -0.158 4.158 25 C 0.121 3.879 26 N -0.503 5.503 27 C 0.085 3.915 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.059 0.941 34 H -0.012 1.012 35 H -0.012 1.012 36 H 0.260 0.740 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.412 0.588 40 H 0.117 0.883 41 H 0.434 0.566 42 H 0.174 0.826 43 H 0.180 0.820 44 H 0.179 0.821 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 4.825 29.883 30.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.064 4.064 3 C -0.175 4.175 4 C 0.006 3.994 5 C -0.555 4.555 6 H 0.088 0.912 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.192 1.192 13 C 0.018 3.982 14 N -0.340 5.340 15 C 0.122 3.878 16 C -0.220 4.220 17 C -0.087 4.087 18 C 0.378 3.622 19 O -0.442 6.442 20 O -0.310 6.310 21 C -0.099 4.099 22 C -0.093 4.093 23 C -0.080 4.080 24 C -0.178 4.178 25 C -0.051 4.051 26 N -0.212 5.212 27 C -0.039 4.039 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.250 0.750 40 H 0.135 0.865 41 H 0.296 0.704 42 H 0.191 0.809 43 H 0.197 0.803 44 H 0.197 0.803 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.591 5.053 28.378 29.047 hybrid contribution 0.563 -0.792 -0.999 1.393 sum -3.027 4.261 27.379 27.873 Atomic orbital electron populations 1.21646 0.93989 1.00799 1.01094 1.20672 0.96415 0.96164 0.93131 1.21646 0.99835 0.94952 1.01093 1.18939 0.94305 0.94153 0.92042 1.21550 1.30619 1.12146 0.91206 0.91233 1.25932 0.95604 0.95839 1.02647 1.70108 1.38641 1.24883 1.24208 0.85603 0.78957 0.78764 0.78348 1.19199 1.21464 1.19189 1.21341 0.97662 0.95358 0.83883 1.44754 1.55481 1.32436 1.01299 1.17263 0.93317 0.92182 0.85082 1.20031 1.05418 0.99111 0.97463 1.18678 1.00847 0.94990 0.94144 1.20909 0.77225 0.83186 0.80843 1.90914 1.53883 1.60046 1.39363 1.84480 1.66921 1.48905 1.30663 1.21545 0.96068 0.93710 0.98567 1.18796 0.99624 0.97210 0.93638 1.21933 0.93801 0.93753 0.98479 1.22343 0.98545 0.97457 0.99419 1.23580 0.95194 0.98221 0.88076 1.67767 1.10374 1.07299 1.35737 1.18703 0.98846 0.94672 0.91668 0.92225 0.92613 0.94320 0.94320 0.92605 0.92233 0.99396 0.99394 0.93097 0.93303 0.93297 0.74970 0.86529 0.70389 0.80902 0.80280 0.80318 0.79688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 8.05 71.98 0.58 -3.84 16 2 C -0.06 -2.57 0.54 -52.18 -0.03 -2.60 16 3 C -0.12 -4.42 8.05 71.98 0.58 -3.84 16 4 C 0.04 2.27 4.04 29.85 0.12 2.39 16 5 C -0.52 -28.63 7.65 25.60 0.20 -28.43 16 6 H 0.07 3.63 5.68 -2.91 -0.02 3.62 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 9 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.14 5.29 3.78 86.38 0.33 5.62 16 14 N -0.71 -22.96 5.12 -339.50 -1.74 -24.69 16 15 C 0.23 7.06 6.65 38.26 0.25 7.32 16 16 C -0.19 -6.08 8.78 22.40 0.20 -5.88 16 17 C -0.08 -2.18 5.87 -20.13 -0.12 -2.30 16 18 C 0.53 13.35 8.26 70.32 0.58 13.93 16 19 O -0.55 -18.42 17.09 19.93 0.34 -18.08 16 20 O -0.50 -7.40 12.63 -56.30 -0.71 -8.11 16 21 C -0.08 -1.48 9.36 22.84 0.21 -1.26 16 22 C -0.09 -1.78 5.74 -21.29 -0.12 -1.90 16 23 C -0.05 -0.61 9.89 22.54 0.22 -0.39 16 24 C -0.16 -1.50 10.03 22.14 0.22 -1.28 16 25 C 0.12 1.82 11.15 85.06 0.95 2.77 16 26 N -0.50 -12.01 9.56 -188.10 -1.80 -13.81 16 27 C 0.09 2.23 6.62 40.50 0.27 2.50 16 28 H 0.06 1.89 6.86 -2.39 -0.02 1.87 16 29 H 0.05 2.20 6.62 -2.38 -0.02 2.18 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 2.20 6.62 -2.39 -0.02 2.18 16 33 H 0.06 1.88 6.86 -2.38 -0.02 1.87 16 34 H -0.01 -0.72 8.14 -2.38 -0.02 -0.73 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 38 H 0.05 1.91 7.92 -2.39 -0.02 1.90 16 39 H 0.41 12.72 5.52 -92.71 -0.51 12.21 16 40 H 0.12 4.21 6.15 -2.91 -0.02 4.19 16 41 H 0.43 2.63 9.11 -74.06 -0.67 1.96 16 42 H 0.17 2.04 7.57 -2.91 -0.02 2.02 16 43 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 44 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 45 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -76.73 370.35 3.16 -73.57 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.14 Total: 19.17 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.90 Total: -16.93 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -3.25 Total: -96.24 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.37 Total: -26.19 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.73 3.16 -73.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.666 kcal (2) G-P(sol) polarization free energy of solvation -76.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.45 seconds