Wall clock time and date at job start Tue Mar 31 2020 14:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47483 * 2 1 4 4 N 1.34631 * 125.89173 * 264.97673 * 3 2 1 5 5 H 0.96998 * 124.81127 * 0.02562 * 4 3 2 6 6 C 1.36431 * 110.37988 * 180.02562 * 4 3 2 7 7 C 1.50690 * 125.46191 * 179.97438 * 6 4 3 8 8 N 1.46900 * 109.47391 * 84.99595 * 7 6 4 9 9 C 1.46895 * 111.00492 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47125 * 180.02562 * 9 8 7 11 11 C 1.38641 * 119.74829 * 269.72810 * 10 9 8 12 12 C 1.37619 * 120.24342 * 179.72251 * 11 10 9 13 13 C 1.40709 * 119.74690 * 0.57208 * 12 11 10 14 14 C 1.41400 * 120.24510 * 179.68125 * 13 12 11 15 15 H 1.07998 * 119.99951 * 204.40893 * 14 13 12 16 16 C 1.39944 * 119.99719 * 24.40723 * 14 13 12 17 17 N 1.30819 * 120.00304 * 17.84498 * 16 14 13 18 18 Si 1.86803 * 119.99764 * 197.84770 * 16 14 13 19 19 H 1.48501 * 109.47048 * 60.00051 * 18 16 14 20 20 H 1.48498 * 109.46907 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46922 * 299.99706 * 18 16 14 22 22 C 1.40712 * 119.51208 * 359.70256 * 13 12 11 23 23 C 1.37618 * 119.74506 * 0.02562 * 22 13 12 24 24 C 1.34437 * 109.08305 * 0.26388 * 6 4 3 25 25 C 1.37839 * 125.90007 * 85.01452 * 3 2 1 26 26 C 1.47109 * 127.01964 * 359.97438 * 25 3 2 27 27 O 1.21547 * 120.00349 * 0.02562 * 26 25 3 28 28 O 1.34796 * 119.99824 * 180.02562 * 26 25 3 29 29 H 1.09004 * 109.46637 * 60.00325 * 1 2 3 30 30 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47229 * 300.00697 * 1 2 3 32 32 H 1.09003 * 109.47375 * 239.99221 * 2 1 3 33 33 H 1.09003 * 109.46972 * 120.00103 * 2 1 3 34 34 H 1.09010 * 109.47005 * 325.00090 * 7 6 4 35 35 H 1.08998 * 109.47668 * 204.99835 * 7 6 4 36 36 H 1.00907 * 110.99754 * 56.04392 * 8 7 6 37 37 H 1.09001 * 109.47233 * 300.00437 * 9 8 7 38 38 H 1.09002 * 109.46952 * 60.00705 * 9 8 7 39 39 H 1.08000 * 119.87324 * 359.97438 * 11 10 9 40 40 H 1.08005 * 120.12390 * 180.27427 * 12 11 10 41 41 H 0.96995 * 120.00332 * 180.02562 * 17 16 14 42 42 H 1.07999 * 120.13101 * 179.97438 * 22 13 12 43 43 H 1.08001 * 119.87232 * 179.97438 * 23 22 13 44 44 H 1.07999 * 126.81214 * 179.71462 * 24 6 4 45 45 H 0.96698 * 116.99678 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3856 2.1331 -1.0865 5 1 2.3539 1.8043 -1.9985 6 6 2.7943 3.3829 -0.7230 7 6 3.2636 4.4587 -1.6681 8 7 2.1029 5.1927 -2.1898 9 6 2.5230 6.2514 -3.1174 10 6 1.3082 6.9811 -3.6301 11 6 0.6797 6.5436 -4.7859 12 6 -0.4337 7.1989 -5.2600 13 6 -0.9266 8.3240 -4.5738 14 6 -2.0658 9.0093 -5.0554 15 1 -2.2186 10.0479 -4.8017 16 6 -2.9953 8.3417 -5.8609 17 7 -3.0171 7.0340 -5.8885 18 14 -4.2051 9.3179 -6.8967 19 1 -3.4590 10.1796 -7.8486 20 1 -5.0764 8.3830 -7.6530 21 1 -5.0420 10.1672 -6.0115 22 6 -0.2772 8.7626 -3.4051 23 6 0.8313 8.0886 -2.9460 24 6 2.7173 3.4990 0.6142 25 6 2.2104 2.2151 1.1123 26 6 1.9506 1.8487 2.5132 27 8 1.5333 0.7397 2.7840 28 8 2.1754 2.7429 3.4965 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8073 4.0032 -2.4959 35 1 3.9204 5.1477 -1.1372 36 1 1.5460 5.5702 -1.4378 37 1 3.1750 6.9529 -2.5969 38 1 3.0613 5.8080 -3.9551 39 1 1.0630 5.6828 -5.3137 40 1 -0.9243 6.8536 -6.1581 41 1 -3.6610 6.5712 -6.4470 42 1 -0.6468 9.6253 -2.8708 43 1 1.3315 8.4236 -2.0494 44 1 2.9755 4.3658 1.2044 45 1 1.9896 2.4564 4.4012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605774375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:35 Heat of formation + Delta-G solvation = -47.653179 kcal Electronic energy + Delta-G solvation = -26242.592918 eV Core-core repulsion = 22417.266228 eV Total energy + Delta-G solvation = -3825.326690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52788 -39.62581 -37.82399 -36.13379 -35.75433 -33.95831 -33.39020 -31.30237 -30.76400 -29.32674 -28.85538 -26.58337 -24.70513 -24.63190 -22.89462 -22.22235 -20.97775 -20.53131 -19.91177 -19.70563 -18.02263 -17.31265 -17.05159 -15.85018 -15.65683 -15.35233 -15.30852 -14.89192 -14.59222 -14.27935 -14.14334 -13.86890 -13.77602 -13.41492 -13.27201 -13.14700 -12.79003 -12.43470 -12.26358 -11.95983 -11.79443 -11.72114 -11.62240 -11.54108 -11.51674 -11.10854 -11.07227 -10.94133 -10.55969 -10.48957 -10.41973 -9.64057 -9.39191 -9.14578 -9.03290 -8.36832 -8.08255 -7.46075 -7.32587 -6.77607 -4.36850 1.37317 2.18842 2.74799 2.81275 3.04725 3.06728 3.07437 3.16991 3.22481 3.35773 3.91344 4.42535 4.49985 4.69199 4.78401 4.88098 5.08448 5.14250 5.29525 5.37693 5.43333 5.51965 5.64449 5.68978 5.70088 5.80232 5.83653 5.84487 6.08846 6.10621 6.20633 6.32463 6.40789 6.48118 6.60129 6.83290 6.94172 7.05484 7.21721 7.27840 7.32353 7.34123 7.59135 7.63726 7.86441 7.98039 8.04010 8.12263 8.28740 8.63003 8.87988 8.96363 10.16592 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015051 B = 0.002242 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.851690 B =12486.161117 C =13092.046148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C 0.126 3.874 4 N -0.528 5.528 5 H 0.420 0.580 6 C 0.026 3.974 7 C 0.120 3.880 8 N -0.683 5.683 9 C 0.125 3.875 10 C -0.216 4.216 11 C -0.079 4.079 12 C -0.168 4.168 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.791 5.791 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.228 4.228 23 C -0.084 4.084 24 C -0.140 4.140 25 C -0.233 4.233 26 C 0.559 3.441 27 O -0.533 6.533 28 O -0.514 6.514 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.346 0.654 37 H 0.021 0.979 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.281 0.719 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.149 0.851 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.477 -11.107 9.719 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C 0.005 3.995 4 N -0.122 5.122 5 H 0.258 0.742 6 C -0.083 4.083 7 C -0.009 4.009 8 N -0.315 5.315 9 C -0.002 4.002 10 C -0.218 4.218 11 C -0.098 4.098 12 C -0.188 4.188 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.416 5.416 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.247 4.247 23 C -0.102 4.102 24 C -0.164 4.164 25 C -0.241 4.241 26 C 0.406 3.594 27 O -0.424 6.424 28 O -0.325 6.325 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.165 0.835 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.166 0.834 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 10.222 -11.913 8.630 17.914 hybrid contribution -0.481 0.747 0.383 0.968 sum 9.742 -11.166 9.012 17.344 Atomic orbital electron populations 1.21675 0.93595 1.02195 1.02613 1.20339 0.97055 0.88814 1.03996 1.20553 0.98881 0.94539 0.85511 1.41499 1.50282 1.11477 1.08921 0.74190 1.20187 1.07025 0.86683 0.94422 1.20436 0.93025 0.92298 0.95157 1.60725 1.19371 1.30107 1.21339 1.20569 0.95093 0.90274 0.94269 1.18852 1.01620 1.00565 1.00719 1.20478 0.95935 0.97700 0.95665 1.21309 0.96504 0.99407 1.01564 1.17622 0.91077 0.91100 0.89161 1.19577 1.04660 0.98373 1.26651 0.90515 1.25913 0.97957 0.94793 0.95526 1.69821 1.31772 1.08445 1.31555 0.86383 0.79845 0.80306 0.80285 1.18818 1.20336 1.19003 1.20935 1.00649 1.03824 0.99315 1.20358 0.96527 0.95767 0.97590 1.21825 1.04858 0.97139 0.92544 1.19170 1.19136 0.97018 0.88768 1.19828 0.72994 0.81274 0.85276 1.90846 1.44549 1.22621 1.84405 1.84610 1.81328 1.46660 1.19865 0.92638 0.91862 0.91858 0.91010 0.88122 0.90517 0.93019 0.83517 0.96076 0.91968 0.89611 0.86546 0.90814 0.89143 0.89857 0.83378 0.73456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.06 -0.61 5.81 -27.89 -0.16 -0.77 16 3 C 0.13 1.42 6.47 -81.51 -0.53 0.90 16 4 N -0.53 -5.54 5.89 -5.20 -0.03 -5.57 16 5 H 0.42 3.54 8.96 -40.82 -0.37 3.17 16 6 C 0.03 0.30 6.63 -81.89 -0.54 -0.24 16 7 C 0.12 1.37 6.21 -4.98 -0.03 1.34 16 8 N -0.68 -10.09 6.48 -116.34 -0.75 -10.84 16 9 C 0.13 2.03 5.80 -4.98 -0.03 2.00 16 10 C -0.22 -4.48 5.41 -104.33 -0.56 -5.05 16 11 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 12 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 13 C 0.11 2.99 5.57 -106.83 -0.60 2.39 16 14 C -0.46 -12.24 9.05 -37.74 -0.34 -12.59 16 15 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 16 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.79 -20.41 10.95 55.55 0.61 -19.80 16 18 Si 0.91 18.56 29.60 -169.99 -5.03 13.52 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.23 -5.52 9.80 -38.87 -0.38 -5.91 16 23 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 24 C -0.14 -1.70 10.89 -37.49 -0.41 -2.11 16 25 C -0.23 -2.96 6.33 -103.01 -0.65 -3.61 16 26 C 0.56 7.03 8.32 34.33 0.29 7.31 16 27 O -0.53 -7.43 15.66 -19.30 -0.30 -7.74 16 28 O -0.51 -5.15 13.33 -40.75 -0.54 -5.69 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.73 8.01 -51.93 -0.42 0.32 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.03 6.79 -51.93 -0.35 0.68 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.35 5.42 8.72 -39.29 -0.34 5.08 16 37 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 38 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 41 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 42 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 45 H 0.41 2.13 9.11 45.56 0.42 2.54 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -30.29 385.66 -10.60 -40.89 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.58 Total: 14.01 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -4.78 Total: -24.59 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.18 Total: -36.21 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.85 Total: -13.43 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.29 -10.60 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605774375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.764 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds