Wall clock time and date at job start Tue Mar 31 2020 14:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47483 * 2 1 4 4 N 1.34631 * 125.89173 * 264.97673 * 3 2 1 5 5 H 0.96998 * 124.81127 * 0.02562 * 4 3 2 6 6 C 1.36431 * 110.37988 * 180.02562 * 4 3 2 7 7 C 1.50690 * 125.46191 * 179.97438 * 6 4 3 8 8 N 1.46900 * 109.47391 * 84.99595 * 7 6 4 9 9 C 1.46895 * 111.00492 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47125 * 180.02562 * 9 8 7 11 11 C 1.38641 * 119.74829 * 269.72810 * 10 9 8 12 12 C 1.37619 * 120.24342 * 179.72251 * 11 10 9 13 13 C 1.40709 * 119.74690 * 0.57208 * 12 11 10 14 14 C 1.41400 * 120.24510 * 179.68125 * 13 12 11 15 15 H 1.07998 * 119.99951 * 204.40893 * 14 13 12 16 16 C 1.39944 * 119.99719 * 24.40723 * 14 13 12 17 17 N 1.30819 * 120.00304 * 17.84498 * 16 14 13 18 18 Si 1.86803 * 119.99764 * 197.84770 * 16 14 13 19 19 H 1.48501 * 109.47048 * 60.00051 * 18 16 14 20 20 H 1.48498 * 109.46907 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46922 * 299.99706 * 18 16 14 22 22 C 1.40712 * 119.51208 * 359.70256 * 13 12 11 23 23 C 1.37618 * 119.74506 * 0.02562 * 22 13 12 24 24 C 1.34437 * 109.08305 * 0.26388 * 6 4 3 25 25 C 1.37839 * 125.90007 * 85.01452 * 3 2 1 26 26 C 1.47109 * 127.01964 * 359.97438 * 25 3 2 27 27 O 1.21547 * 120.00349 * 0.02562 * 26 25 3 28 28 O 1.34796 * 119.99824 * 180.02562 * 26 25 3 29 29 H 1.09004 * 109.46637 * 60.00325 * 1 2 3 30 30 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47229 * 300.00697 * 1 2 3 32 32 H 1.09003 * 109.47375 * 239.99221 * 2 1 3 33 33 H 1.09003 * 109.46972 * 120.00103 * 2 1 3 34 34 H 1.09010 * 109.47005 * 325.00090 * 7 6 4 35 35 H 1.08998 * 109.47668 * 204.99835 * 7 6 4 36 36 H 1.00907 * 110.99754 * 56.04392 * 8 7 6 37 37 H 1.09001 * 109.47233 * 300.00437 * 9 8 7 38 38 H 1.09002 * 109.46952 * 60.00705 * 9 8 7 39 39 H 1.08000 * 119.87324 * 359.97438 * 11 10 9 40 40 H 1.08005 * 120.12390 * 180.27427 * 12 11 10 41 41 H 0.96995 * 120.00332 * 180.02562 * 17 16 14 42 42 H 1.07999 * 120.13101 * 179.97438 * 22 13 12 43 43 H 1.08001 * 119.87232 * 179.97438 * 23 22 13 44 44 H 1.07999 * 126.81214 * 179.71462 * 24 6 4 45 45 H 0.96698 * 116.99678 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3856 2.1331 -1.0865 5 1 2.3539 1.8043 -1.9985 6 6 2.7943 3.3829 -0.7230 7 6 3.2636 4.4587 -1.6681 8 7 2.1029 5.1927 -2.1898 9 6 2.5230 6.2514 -3.1174 10 6 1.3082 6.9811 -3.6301 11 6 0.6797 6.5436 -4.7859 12 6 -0.4337 7.1989 -5.2600 13 6 -0.9266 8.3240 -4.5738 14 6 -2.0658 9.0093 -5.0554 15 1 -2.2186 10.0479 -4.8017 16 6 -2.9953 8.3417 -5.8609 17 7 -3.0171 7.0340 -5.8885 18 14 -4.2051 9.3179 -6.8967 19 1 -3.4590 10.1796 -7.8486 20 1 -5.0764 8.3830 -7.6530 21 1 -5.0420 10.1672 -6.0115 22 6 -0.2772 8.7626 -3.4051 23 6 0.8313 8.0886 -2.9460 24 6 2.7173 3.4990 0.6142 25 6 2.2104 2.2151 1.1123 26 6 1.9506 1.8487 2.5132 27 8 1.5333 0.7397 2.7840 28 8 2.1754 2.7429 3.4965 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8073 4.0032 -2.4959 35 1 3.9204 5.1477 -1.1372 36 1 1.5460 5.5702 -1.4378 37 1 3.1750 6.9529 -2.5969 38 1 3.0613 5.8080 -3.9551 39 1 1.0630 5.6828 -5.3137 40 1 -0.9243 6.8536 -6.1581 41 1 -3.6610 6.5712 -6.4470 42 1 -0.6468 9.6253 -2.8708 43 1 1.3315 8.4236 -2.0494 44 1 2.9755 4.3658 1.2044 45 1 1.9896 2.4564 4.4012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605774375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:34 Heat of formation + Delta-G solvation = -66.190794 kcal Electronic energy + Delta-G solvation = -26243.396769 eV Core-core repulsion = 22417.266228 eV Total energy + Delta-G solvation = -3826.130541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.39072 -40.52890 -39.54780 -37.18881 -36.86015 -35.47352 -34.48378 -32.28667 -32.17563 -31.12871 -30.13044 -28.01994 -25.97056 -25.50977 -24.28379 -23.09596 -22.80547 -21.67029 -21.34500 -20.58243 -19.19923 -18.93157 -18.00041 -17.16301 -16.73940 -16.57505 -16.43253 -15.93498 -15.86898 -15.62388 -15.27474 -15.18741 -14.89256 -14.64632 -14.46623 -14.21300 -14.02759 -13.77478 -13.63518 -13.38186 -13.08295 -13.04383 -12.77666 -12.67537 -12.57469 -12.47067 -12.36931 -12.26094 -12.06215 -11.89033 -11.45429 -11.40635 -11.20796 -10.99002 -9.92337 -9.44757 -9.31435 -9.11582 -9.07200 -8.62182 -6.31729 0.47206 0.96084 1.18492 1.31007 1.37415 1.48479 1.54656 2.01468 2.20745 2.28655 2.55796 2.72162 3.49765 3.68786 3.84696 3.91202 4.04280 4.23132 4.35645 4.37389 4.39489 4.46543 4.55641 4.60312 4.62735 4.69895 4.74947 4.81475 4.88432 4.94037 5.03784 5.10124 5.17541 5.27788 5.29518 5.42066 5.49729 5.68751 5.73131 5.74143 5.94649 5.97552 6.11981 6.16588 6.29705 6.42592 6.48595 6.51192 6.74142 6.96626 7.07394 7.17014 8.34215 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015051 B = 0.002242 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.851690 B =12486.161117 C =13092.046148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C 0.128 3.872 4 N -0.521 5.521 5 H 0.431 0.569 6 C 0.022 3.978 7 C 0.127 3.873 8 N -0.694 5.694 9 C 0.132 3.868 10 C -0.199 4.199 11 C -0.085 4.085 12 C -0.194 4.194 13 C 0.078 3.922 14 C -0.505 4.505 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.826 5.826 18 Si 0.980 3.020 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.246 4.246 23 C -0.085 4.085 24 C -0.148 4.148 25 C -0.262 4.262 26 C 0.558 3.442 27 O -0.554 6.554 28 O -0.512 6.512 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.340 0.660 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.287 0.713 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.155 0.845 45 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.907 -11.656 9.867 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C 0.006 3.994 4 N -0.116 5.116 5 H 0.270 0.730 6 C -0.088 4.088 7 C -0.002 4.002 8 N -0.325 5.325 9 C 0.005 3.995 10 C -0.200 4.200 11 C -0.104 4.104 12 C -0.213 4.213 13 C 0.076 3.924 14 C -0.534 4.534 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.452 5.452 18 Si 0.801 3.199 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.185 1.185 22 C -0.265 4.265 23 C -0.103 4.103 24 C -0.172 4.172 25 C -0.270 4.270 26 C 0.406 3.594 27 O -0.448 6.448 28 O -0.325 6.325 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.158 0.842 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.172 0.828 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 11.676 -12.461 8.796 19.208 hybrid contribution -0.766 0.848 0.488 1.243 sum 10.911 -11.612 9.284 18.441 Atomic orbital electron populations 1.21641 0.93926 1.02897 1.01295 1.20370 0.96612 0.87997 1.04929 1.20842 0.97982 0.95152 0.85431 1.41522 1.49610 1.11143 1.09324 0.72980 1.20231 1.07149 0.87085 0.94287 1.20459 0.91895 0.92059 0.95748 1.60602 1.20984 1.29541 1.21403 1.20483 0.92887 0.90869 0.95296 1.19355 1.01948 0.99673 0.99031 1.20748 0.95186 0.97927 0.96553 1.21282 0.98056 1.00347 1.01635 1.17967 0.91997 0.92065 0.90415 1.19815 1.05974 0.98553 1.29088 0.90916 1.26738 0.99474 0.95691 0.96075 1.69880 1.32952 1.09879 1.32477 0.85288 0.77406 0.78794 0.78432 1.18467 1.19183 1.18458 1.21157 1.01815 1.04477 0.99061 1.20716 0.95641 0.95492 0.98476 1.21998 1.04935 0.97241 0.93056 1.19465 1.20378 0.97845 0.89351 1.19910 0.72602 0.81157 0.85767 1.90828 1.45705 1.23470 1.84814 1.84565 1.80892 1.46121 1.20967 0.92871 0.90215 0.94130 0.88256 0.88950 0.88951 0.91389 0.84166 0.94071 0.90624 0.87835 0.88523 0.90253 0.88926 0.86601 0.82763 0.71218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 71.98 0.71 -1.91 16 2 C -0.06 -1.07 5.81 29.85 0.17 -0.89 16 3 C 0.13 2.70 6.47 42.04 0.27 2.98 16 4 N -0.52 -9.79 5.89 -170.38 -1.00 -10.80 16 5 H 0.43 6.12 8.96 -92.71 -0.83 5.29 16 6 C 0.02 0.46 6.63 40.97 0.27 0.73 16 7 C 0.13 2.44 6.21 85.55 0.53 2.97 16 8 N -0.69 -18.25 6.48 -522.00 -3.38 -21.63 16 9 C 0.13 3.80 5.80 85.56 0.50 4.30 16 10 C -0.20 -7.84 5.41 -19.67 -0.11 -7.94 16 11 C -0.09 -3.85 9.67 22.22 0.21 -3.63 16 12 C -0.19 -10.24 8.70 22.73 0.20 -10.04 16 13 C 0.08 4.26 5.57 -21.29 -0.12 4.14 16 14 C -0.50 -27.77 9.05 23.46 0.21 -27.56 16 15 H 0.07 3.87 7.91 -2.91 -0.02 3.84 16 16 C 0.03 1.79 5.14 85.26 0.44 2.23 16 17 N -0.83 -44.03 10.95 21.83 0.24 -43.79 16 18 Si 0.98 38.77 29.60 68.60 2.03 40.80 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 C -0.25 -12.05 9.80 22.73 0.22 -11.82 16 23 C -0.08 -3.53 9.67 22.22 0.21 -3.32 16 24 C -0.15 -3.37 10.89 23.62 0.26 -3.11 16 25 C -0.26 -6.42 6.33 -18.82 -0.12 -6.53 16 26 C 0.56 13.73 8.32 70.15 0.58 14.32 16 27 O -0.55 -15.40 15.66 19.68 0.31 -15.09 16 28 O -0.51 -9.78 13.33 -57.07 -0.76 -10.54 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 0.93 8.01 -2.39 -0.02 0.92 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.81 6.79 -2.39 -0.02 1.80 16 34 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.34 9.72 8.72 -89.69 -0.78 8.94 16 37 H 0.04 1.05 8.08 -2.39 -0.02 1.03 16 38 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 39 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.10 5.40 6.16 -2.91 -0.02 5.38 16 41 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 42 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 44 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 45 H 0.43 4.00 9.11 -74.06 -0.67 3.32 16 Total: -1.00 -67.48 385.66 0.64 -66.83 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -1.24 Total: 39.33 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.45 Total: -45.11 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -4.15 Total: -76.22 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.45 Total: -25.63 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -67.48 0.64 -66.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605774375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.644 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds