Wall clock time and date at job start Tue Mar 31 2020 16:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99876 * 2 1 4 4 C 1.50698 * 120.00330 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.46955 * 95.00104 * 4 2 1 6 6 C 1.46908 * 110.99982 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47050 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.54323 * 54.37953 * 7 6 5 9 9 C 1.34775 * 119.99793 * 57.37770 * 8 7 6 10 10 O 1.21279 * 120.00598 * 5.12025 * 9 8 7 11 11 C 1.50702 * 119.99716 * 185.11869 * 9 8 7 12 12 S 1.80998 * 109.47304 * 180.02562 * 11 9 8 13 13 C 1.76190 * 100.00416 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00170 * 0.02562 * 13 12 11 15 15 C 1.38799 * 120.00242 * 179.97438 * 13 12 11 16 16 N 1.31623 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00114 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46892 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47166 * 120.00009 * 17 15 13 20 20 H 1.48496 * 109.47293 * 240.00468 * 17 15 13 21 21 C 1.53180 * 109.54288 * 294.20185 * 7 6 5 22 22 C 1.53106 * 109.15659 * 183.24207 * 21 7 6 23 23 O 1.42904 * 109.48624 * 57.47389 * 22 21 7 24 24 C 1.42907 * 114.09837 * 298.89142 * 23 22 21 25 25 C 1.53086 * 109.41482 * 61.15393 * 24 23 22 26 26 H 1.08001 * 119.99825 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00517 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47590 * 270.00360 * 3 2 1 29 29 H 1.09007 * 109.46920 * 30.00072 * 3 2 1 30 30 H 1.08999 * 109.47192 * 149.99582 * 3 2 1 31 31 H 1.08997 * 109.47100 * 335.00592 * 4 2 1 32 32 H 1.09001 * 109.47690 * 214.99980 * 4 2 1 33 33 H 1.00903 * 111.00326 * 303.95303 * 5 4 2 34 34 H 1.08996 * 109.46652 * 60.00082 * 6 5 4 35 35 H 1.09001 * 109.46939 * 300.00090 * 6 5 4 36 36 H 0.97006 * 120.00111 * 237.37643 * 8 7 6 37 37 H 1.09005 * 109.47109 * 300.00355 * 11 9 8 38 38 H 1.09005 * 109.47147 * 60.00147 * 11 9 8 39 39 H 0.97003 * 120.00585 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.52328 * 303.06210 * 21 7 6 41 41 H 1.09002 * 109.52215 * 63.25135 * 21 7 6 42 42 H 1.08995 * 109.40475 * 297.49394 * 22 21 7 43 43 H 1.08997 * 109.48960 * 177.51071 * 22 21 7 44 44 H 1.09001 * 109.47617 * 301.17391 * 24 23 22 45 45 H 1.09004 * 109.48745 * 181.14625 * 24 23 22 46 46 H 1.09004 * 109.51945 * 182.48084 * 25 24 23 47 47 H 1.09003 * 109.57542 * 62.33363 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 7 2.4130 -1.6681 -1.3805 6 6 3.1497 -2.9384 -1.4202 7 6 3.4959 -3.2821 -2.8704 8 7 4.2117 -2.1600 -3.4825 9 6 5.3543 -1.7073 -2.9293 10 8 5.8394 -2.2860 -1.9802 11 6 6.0291 -0.4821 -3.4900 12 16 7.5289 -0.1311 -2.5396 13 6 8.0978 1.3061 -3.3853 14 1 7.5382 1.6972 -4.2222 15 6 9.2646 1.9363 -2.9755 16 7 9.9464 1.4600 -1.9553 17 14 9.8682 3.4596 -3.8726 18 1 8.9299 3.7888 -4.9756 19 1 9.9346 4.5994 -2.9232 20 1 11.2194 3.2019 -4.4320 21 6 2.2082 -3.5568 -3.6532 22 6 2.5681 -3.9783 -5.0804 23 8 3.4157 -5.1281 -5.0384 24 6 4.6554 -4.9147 -4.3602 25 6 4.3794 -4.5329 -2.9037 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9352 0.0004 28 1 2.2451 1.6199 -1.0276 29 1 1.4743 2.0648 0.5139 30 1 3.0158 1.1748 0.5139 31 1 1.4387 -2.0856 0.4333 32 1 2.9743 -1.1991 0.5889 33 1 1.5901 -1.7094 -1.9630 34 1 2.5320 -3.7300 -0.9963 35 1 4.0679 -2.8441 -0.8404 36 1 3.8633 -1.7429 -4.2860 37 1 6.2930 -0.6578 -4.5329 38 1 5.3502 0.3683 -3.4253 39 1 10.7621 1.9001 -1.6690 40 1 1.6506 -4.3577 -3.1678 41 1 1.5993 -2.6531 -3.6815 42 1 3.0889 -3.1609 -5.5790 43 1 1.6575 -4.2178 -5.6295 44 1 5.2034 -4.1095 -4.8495 45 1 5.2484 -5.8288 -4.3904 46 1 5.3219 -4.3268 -2.3963 47 1 3.8675 -5.3539 -2.4016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755093023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:50 Heat of formation + Delta-G solvation = -68.230188 kcal Electronic energy + Delta-G solvation = -26888.869780 eV Core-core repulsion = 23198.094755 eV Total energy + Delta-G solvation = -3690.775025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68358 -38.26631 -37.35009 -35.50509 -33.32873 -32.40542 -31.73205 -31.31043 -28.70267 -27.60358 -27.12917 -25.45806 -24.64916 -23.84570 -22.25528 -21.02141 -19.21018 -18.58351 -17.87636 -16.71554 -16.45986 -16.16883 -16.07273 -15.28373 -15.08939 -14.87174 -14.78470 -14.62897 -14.44786 -14.11470 -13.75652 -13.61839 -13.18602 -13.05361 -12.94906 -12.74460 -12.50700 -12.33672 -11.95255 -11.85868 -11.66853 -11.57686 -11.46223 -11.15144 -11.05838 -10.99152 -10.77720 -10.72347 -10.49392 -9.78853 -9.72575 -9.29601 -9.10762 -9.05154 -8.71540 -8.42750 -8.18503 -6.45147 -6.19645 -3.88637 2.04303 3.06691 3.21900 3.23236 3.29884 3.34868 3.72046 3.76219 4.16264 4.23198 4.39388 4.57496 4.72494 4.75098 4.80505 4.90499 4.99537 5.15814 5.16200 5.27590 5.31281 5.40154 5.44761 5.49217 5.51991 5.56099 5.62831 5.66869 5.74131 5.75592 5.80833 5.83128 5.94468 5.96983 6.04534 6.06268 6.15939 6.23235 6.45696 6.71120 6.73727 6.93031 7.04923 7.31990 7.62288 7.84163 8.37827 8.74859 9.26245 10.87795 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.003933 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.186906 B = 7117.786729 C = 9180.089618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.116 4.116 4 C 0.092 3.908 5 N -0.671 5.671 6 C 0.048 3.952 7 C 0.188 3.812 8 N -0.718 5.718 9 C 0.547 3.453 10 O -0.519 6.519 11 C -0.152 4.152 12 S -0.058 6.058 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.916 3.084 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.160 4.160 22 C 0.062 3.938 23 O -0.384 6.384 24 C 0.065 3.935 25 C -0.167 4.167 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.333 0.667 34 H 0.031 0.969 35 H 0.101 0.899 36 H 0.394 0.606 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.267 0.733 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.014 -8.929 -2.108 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.106 4.106 3 C -0.173 4.173 4 C -0.036 4.036 5 N -0.302 5.302 6 C -0.081 4.081 7 C 0.101 3.899 8 N -0.372 5.372 9 C 0.333 3.667 10 O -0.393 6.393 11 C -0.303 4.303 12 S 0.168 5.832 13 C -0.682 4.682 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.504 5.504 17 Si 0.743 3.257 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.198 4.198 22 C -0.015 4.015 23 O -0.303 6.303 24 C -0.012 4.012 25 C -0.206 4.206 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.151 0.849 34 H 0.049 0.951 35 H 0.119 0.881 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.121 0.879 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.520 -9.660 -0.476 20.893 hybrid contribution -1.079 1.572 -1.674 2.537 sum -19.599 -8.088 -2.150 21.311 Atomic orbital electron populations 1.23651 0.95226 1.01564 1.03808 1.21758 0.94910 0.96058 0.97841 1.20820 1.00159 0.93613 1.02695 1.21014 0.99077 0.93024 0.90506 1.60343 1.27664 1.32767 1.09403 1.22418 0.99805 0.89399 0.96523 1.20175 0.90916 0.86521 0.92304 1.45869 1.25592 1.35083 1.30670 1.20047 0.79421 0.84518 0.82689 1.90602 1.63788 1.57691 1.27267 1.23516 1.04448 0.97752 1.04542 1.85319 1.19654 1.35918 1.42287 1.22917 1.12283 1.13685 1.19308 0.91021 1.24967 0.95588 0.97816 0.95141 1.70023 1.15962 1.39569 1.24825 0.86153 0.78646 0.81560 0.79362 1.19641 1.20601 1.20599 1.22505 0.97230 1.02655 0.97454 1.22512 0.94677 0.88992 0.95291 1.87917 1.30023 1.35377 1.77001 1.22551 0.85491 1.01777 0.91379 1.22602 1.03045 0.96697 0.98271 0.89026 0.88427 0.90901 0.92387 0.91379 0.95118 0.90017 0.84931 0.95111 0.88104 0.77165 0.89851 0.89308 0.92312 0.89898 0.90090 0.93051 0.88866 0.92729 0.88845 0.87895 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 13.89 29.01 0.40 -1.47 16 2 C -0.11 -1.13 5.56 -101.07 -0.56 -1.69 16 3 C -0.12 -1.32 10.03 36.01 0.36 -0.96 16 4 C 0.09 1.04 5.84 -4.98 -0.03 1.01 16 5 N -0.67 -7.61 6.20 -115.05 -0.71 -8.32 16 6 C 0.05 0.58 4.32 -3.82 -0.02 0.56 16 7 C 0.19 2.07 0.43 -131.64 -0.06 2.02 16 8 N -0.72 -9.06 3.97 -47.44 -0.19 -9.25 16 9 C 0.55 9.60 7.26 -10.99 -0.08 9.52 16 10 O -0.52 -10.73 12.16 5.56 0.07 -10.66 16 11 C -0.15 -3.03 6.16 36.01 0.22 -2.80 16 12 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 13 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 14 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 17 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.16 -1.32 4.68 -26.58 -0.12 -1.44 16 22 C 0.06 0.54 6.67 37.21 0.25 0.78 16 23 O -0.38 -4.34 10.77 -35.23 -0.38 -4.72 16 24 C 0.06 0.74 6.68 37.20 0.25 0.99 16 25 C -0.17 -1.99 4.80 -26.60 -0.13 -2.12 16 26 H 0.09 0.75 7.99 -52.49 -0.42 0.33 16 27 H 0.10 0.82 8.04 -52.49 -0.42 0.40 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 30 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.03 0.31 7.99 -51.93 -0.41 -0.10 16 32 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.33 3.23 7.09 -39.29 -0.28 2.95 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 1.57 6.34 -51.93 -0.33 1.24 16 36 H 0.39 4.18 7.46 -40.82 -0.30 3.87 16 37 H 0.08 1.55 8.14 -51.91 -0.42 1.13 16 38 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.57 6.86 -51.93 -0.36 0.21 16 42 H 0.05 0.43 7.05 -51.93 -0.37 0.06 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.68 7.75 -51.93 -0.40 0.27 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.10 1.53 6.15 -51.93 -0.32 1.21 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -32.72 387.28 -8.99 -41.72 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.80 Total: 6.60 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 0.68 Total: -8.46 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.17 Total: -42.95 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.31 Total: -15.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.72 -8.99 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755093023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.515 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds