Wall clock time and date at job start Tue Mar 31 2020 16:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99876 * 2 1 4 4 C 1.50698 * 120.00330 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.46955 * 95.00104 * 4 2 1 6 6 C 1.46908 * 110.99982 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47050 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.54323 * 54.37953 * 7 6 5 9 9 C 1.34775 * 119.99793 * 57.37770 * 8 7 6 10 10 O 1.21279 * 120.00598 * 5.12025 * 9 8 7 11 11 C 1.50702 * 119.99716 * 185.11869 * 9 8 7 12 12 S 1.80998 * 109.47304 * 180.02562 * 11 9 8 13 13 C 1.76190 * 100.00416 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00170 * 0.02562 * 13 12 11 15 15 C 1.38799 * 120.00242 * 179.97438 * 13 12 11 16 16 N 1.31623 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00114 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46892 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47166 * 120.00009 * 17 15 13 20 20 H 1.48496 * 109.47293 * 240.00468 * 17 15 13 21 21 C 1.53180 * 109.54288 * 294.20185 * 7 6 5 22 22 C 1.53106 * 109.15659 * 183.24207 * 21 7 6 23 23 O 1.42904 * 109.48624 * 57.47389 * 22 21 7 24 24 C 1.42907 * 114.09837 * 298.89142 * 23 22 21 25 25 C 1.53086 * 109.41482 * 61.15393 * 24 23 22 26 26 H 1.08001 * 119.99825 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00517 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47590 * 270.00360 * 3 2 1 29 29 H 1.09007 * 109.46920 * 30.00072 * 3 2 1 30 30 H 1.08999 * 109.47192 * 149.99582 * 3 2 1 31 31 H 1.08997 * 109.47100 * 335.00592 * 4 2 1 32 32 H 1.09001 * 109.47690 * 214.99980 * 4 2 1 33 33 H 1.00903 * 111.00326 * 303.95303 * 5 4 2 34 34 H 1.08996 * 109.46652 * 60.00082 * 6 5 4 35 35 H 1.09001 * 109.46939 * 300.00090 * 6 5 4 36 36 H 0.97006 * 120.00111 * 237.37643 * 8 7 6 37 37 H 1.09005 * 109.47109 * 300.00355 * 11 9 8 38 38 H 1.09005 * 109.47147 * 60.00147 * 11 9 8 39 39 H 0.97003 * 120.00585 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.52328 * 303.06210 * 21 7 6 41 41 H 1.09002 * 109.52215 * 63.25135 * 21 7 6 42 42 H 1.08995 * 109.40475 * 297.49394 * 22 21 7 43 43 H 1.08997 * 109.48960 * 177.51071 * 22 21 7 44 44 H 1.09001 * 109.47617 * 301.17391 * 24 23 22 45 45 H 1.09004 * 109.48745 * 181.14625 * 24 23 22 46 46 H 1.09004 * 109.51945 * 182.48084 * 25 24 23 47 47 H 1.09003 * 109.57542 * 62.33363 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 7 2.4130 -1.6681 -1.3805 6 6 3.1497 -2.9384 -1.4202 7 6 3.4959 -3.2821 -2.8704 8 7 4.2117 -2.1600 -3.4825 9 6 5.3543 -1.7073 -2.9293 10 8 5.8394 -2.2860 -1.9802 11 6 6.0291 -0.4821 -3.4900 12 16 7.5289 -0.1311 -2.5396 13 6 8.0978 1.3061 -3.3853 14 1 7.5382 1.6972 -4.2222 15 6 9.2646 1.9363 -2.9755 16 7 9.9464 1.4600 -1.9553 17 14 9.8682 3.4596 -3.8726 18 1 8.9299 3.7888 -4.9756 19 1 9.9346 4.5994 -2.9232 20 1 11.2194 3.2019 -4.4320 21 6 2.2082 -3.5568 -3.6532 22 6 2.5681 -3.9783 -5.0804 23 8 3.4157 -5.1281 -5.0384 24 6 4.6554 -4.9147 -4.3602 25 6 4.3794 -4.5329 -2.9037 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9352 0.0004 28 1 2.2451 1.6199 -1.0276 29 1 1.4743 2.0648 0.5139 30 1 3.0158 1.1748 0.5139 31 1 1.4387 -2.0856 0.4333 32 1 2.9743 -1.1991 0.5889 33 1 1.5901 -1.7094 -1.9630 34 1 2.5320 -3.7300 -0.9963 35 1 4.0679 -2.8441 -0.8404 36 1 3.8633 -1.7429 -4.2860 37 1 6.2930 -0.6578 -4.5329 38 1 5.3502 0.3683 -3.4253 39 1 10.7621 1.9001 -1.6690 40 1 1.6506 -4.3577 -3.1678 41 1 1.5993 -2.6531 -3.6815 42 1 3.0889 -3.1609 -5.5790 43 1 1.6575 -4.2178 -5.6295 44 1 5.2034 -4.1095 -4.8495 45 1 5.2484 -5.8288 -4.3904 46 1 5.3219 -4.3268 -2.3963 47 1 3.8675 -5.3539 -2.4016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755093023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:49 Heat of formation + Delta-G solvation = -91.612360 kcal Electronic energy + Delta-G solvation = -26889.883707 eV Core-core repulsion = 23198.094755 eV Total energy + Delta-G solvation = -3691.788952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73189 -39.43799 -38.26113 -36.49459 -34.57618 -34.35166 -32.88295 -32.10693 -30.16676 -28.54155 -27.97755 -27.63193 -25.55272 -24.64462 -23.20802 -22.22838 -20.31005 -19.82593 -19.43644 -17.97203 -17.34887 -17.28258 -16.97376 -16.87245 -16.40642 -16.25239 -15.89546 -15.70687 -15.48310 -15.44891 -14.83288 -14.71883 -14.46599 -14.31077 -14.09179 -13.83594 -13.59856 -13.38692 -13.17953 -13.13121 -12.92292 -12.86213 -12.63325 -12.57125 -12.45982 -12.28579 -11.95575 -11.69349 -11.66731 -11.36057 -11.14734 -10.67510 -10.46642 -10.22851 -10.09810 -9.86644 -9.31857 -8.61733 -8.33703 -6.09660 1.26461 1.29588 1.40605 1.48445 1.59813 1.79820 2.27333 2.37652 2.94326 3.00479 3.25825 3.35110 3.56599 3.75183 3.87261 3.92570 3.98900 4.04726 4.07914 4.27715 4.35477 4.41374 4.45358 4.54171 4.56812 4.62332 4.66318 4.68848 4.75525 4.80693 4.82602 4.84965 5.01208 5.04537 5.07138 5.08062 5.15293 5.16585 5.42869 5.62678 5.68327 5.88643 6.01814 6.20903 6.24404 6.53457 6.65934 7.08115 7.41820 8.75609 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.003933 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.186906 B = 7117.786729 C = 9180.089618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.129 4.129 3 C -0.114 4.114 4 C 0.097 3.903 5 N -0.678 5.678 6 C 0.055 3.945 7 C 0.188 3.812 8 N -0.694 5.694 9 C 0.549 3.451 10 O -0.554 6.554 11 C -0.129 4.129 12 S -0.142 6.142 13 C -0.546 4.546 14 H 0.078 0.922 15 C 0.015 3.985 16 N -0.911 5.911 17 Si 0.995 3.005 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.273 1.273 21 C -0.148 4.148 22 C 0.055 3.945 23 O -0.394 6.394 24 C 0.070 3.930 25 C -0.164 4.164 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.347 0.653 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.408 0.592 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.270 0.730 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.119 0.881 44 H 0.042 0.958 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.121 -8.572 -4.054 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.129 4.129 3 C -0.171 4.171 4 C -0.032 4.032 5 N -0.310 5.310 6 C -0.075 4.075 7 C 0.101 3.899 8 N -0.348 5.348 9 C 0.335 3.665 10 O -0.432 6.432 11 C -0.280 4.280 12 S 0.085 5.915 13 C -0.694 4.694 14 H 0.097 0.903 15 C -0.189 4.189 16 N -0.548 5.548 17 Si 0.817 3.183 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.186 4.186 22 C -0.022 4.022 23 O -0.313 6.313 24 C -0.007 4.007 25 C -0.203 4.203 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.166 0.834 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.245 0.755 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.137 0.863 44 H 0.060 0.940 45 H 0.116 0.884 46 H 0.087 0.913 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.681 -9.312 -2.457 23.724 hybrid contribution -0.248 1.386 -1.059 1.762 sum -21.929 -7.926 -3.516 23.581 Atomic orbital electron populations 1.23840 0.94399 1.02867 1.00579 1.21641 0.95513 0.95102 1.00680 1.20771 0.99532 0.94858 1.01911 1.20910 0.98074 0.94038 0.90150 1.60257 1.28451 1.32425 1.09908 1.22237 0.98426 0.90361 0.96478 1.20337 0.92018 0.85169 0.92370 1.45608 1.23804 1.34907 1.30444 1.19674 0.80577 0.83858 0.82410 1.90616 1.65054 1.58576 1.28922 1.23358 1.01152 0.99477 1.04037 1.85465 1.24392 1.36507 1.45135 1.23237 1.12783 1.13905 1.19459 0.90336 1.26066 0.95618 1.01360 0.95882 1.70181 1.16567 1.41412 1.26631 0.84960 0.78246 0.76848 0.78242 1.18160 1.19931 1.19878 1.22465 0.95342 1.04076 0.96715 1.22774 0.95252 0.88451 0.95691 1.87914 1.29850 1.36739 1.76812 1.22444 0.85933 1.01584 0.90757 1.22526 1.01733 0.97586 0.98498 0.87418 0.87306 0.91920 0.90895 0.93742 0.93612 0.93050 0.83351 0.93277 0.92356 0.75499 0.88213 0.88267 0.92060 0.88568 0.88024 0.92723 0.86324 0.94008 0.88382 0.91346 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 13.89 67.78 0.94 -1.81 16 2 C -0.13 -2.60 5.56 -16.49 -0.09 -2.69 16 3 C -0.11 -2.60 10.03 71.24 0.71 -1.88 16 4 C 0.10 2.14 5.84 85.56 0.50 2.64 16 5 N -0.68 -14.58 6.20 -517.92 -3.21 -17.79 16 6 C 0.06 1.28 4.32 86.30 0.37 1.66 16 7 C 0.19 3.88 0.43 3.72 0.00 3.88 16 8 N -0.69 -16.81 3.97 -422.39 -1.68 -18.49 16 9 C 0.55 19.63 7.26 87.66 0.64 20.26 16 10 O -0.55 -24.15 12.16 -3.03 -0.04 -24.19 16 11 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 12 S -0.14 -7.91 20.57 -56.49 -1.16 -9.07 16 13 C -0.55 -31.51 9.50 67.95 0.65 -30.87 16 14 H 0.08 4.26 7.80 -2.91 -0.02 4.23 16 15 C 0.02 0.89 5.49 84.86 0.47 1.35 16 16 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 17 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 18 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 C -0.15 -1.90 4.68 30.69 0.14 -1.76 16 22 C 0.05 0.75 6.67 72.02 0.48 1.23 16 23 O -0.39 -7.95 10.77 -148.98 -1.60 -9.55 16 24 C 0.07 1.53 6.68 72.01 0.48 2.02 16 25 C -0.16 -3.86 4.80 30.68 0.15 -3.71 16 26 H 0.11 1.33 7.99 -2.91 -0.02 1.31 16 27 H 0.11 1.45 8.04 -2.91 -0.02 1.43 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.38 8.06 -2.38 -0.02 1.36 16 30 H 0.04 1.19 8.08 -2.39 -0.02 1.17 16 31 H 0.05 0.86 7.99 -2.39 -0.02 0.84 16 32 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 33 H 0.35 5.70 7.09 -89.69 -0.64 5.06 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.91 6.34 -2.39 -0.02 1.90 16 36 H 0.41 7.71 7.46 -92.70 -0.69 7.02 16 37 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.10 0.95 6.86 -2.39 -0.02 0.94 16 42 H 0.05 0.72 7.05 -2.39 -0.02 0.71 16 43 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.04 1.01 7.75 -2.39 -0.02 1.00 16 45 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.07 2.13 6.15 -2.38 -0.01 2.12 16 47 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -74.75 387.28 0.14 -74.61 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.36 Total: 28.88 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.88 Total: -14.43 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -4.60 Total: -92.30 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.64 Total: -33.74 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -74.75 0.14 -74.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755093023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.003 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds