Wall clock time and date at job start Tue Mar 31 2020 16:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46498 * 119.99944 * 2 1 4 4 C 1.52996 * 109.47495 * 83.33770 * 3 2 1 5 5 H 1.09005 * 112.96607 * 295.15845 * 4 3 2 6 6 C 1.53950 * 113.77087 * 66.83056 * 4 3 2 7 7 C 1.53950 * 86.28851 * 138.02256 * 6 4 3 8 8 N 1.47578 * 86.11652 * 336.39403 * 7 6 4 9 9 C 1.34782 * 134.49330 * 204.63610 * 8 7 6 10 10 O 1.21282 * 119.99849 * 183.28987 * 9 8 7 11 11 C 1.50695 * 119.99827 * 3.29476 * 9 8 7 12 12 S 1.80998 * 109.47017 * 179.97438 * 11 9 8 13 13 C 1.76207 * 99.99855 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00343 * 0.02562 * 13 12 11 15 15 C 1.38800 * 119.99851 * 179.97438 * 13 12 11 16 16 N 1.31632 * 119.99785 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00003 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46877 * 59.99821 * 17 15 13 19 19 H 1.48500 * 109.47204 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47025 * 299.99952 * 17 15 13 21 21 C 1.34775 * 119.99713 * 179.97438 * 2 1 3 22 22 O 1.21275 * 120.00007 * 184.78138 * 21 2 1 23 23 C 1.50708 * 119.99823 * 4.78713 * 21 2 1 24 24 C 1.53006 * 109.46479 * 173.80790 * 23 21 2 25 25 C 1.52996 * 109.47197 * 293.81020 * 23 21 2 26 26 C 1.53001 * 109.47082 * 53.81491 * 23 21 2 27 27 H 1.09000 * 109.46645 * 62.43932 * 1 2 3 28 28 H 1.08996 * 109.47077 * 182.43774 * 1 2 3 29 29 H 1.09003 * 109.46743 * 302.44106 * 1 2 3 30 30 H 1.09007 * 109.46909 * 323.33320 * 3 2 1 31 31 H 1.08995 * 109.46588 * 203.33536 * 3 2 1 32 32 H 1.08994 * 113.74284 * 252.36771 * 6 4 3 33 33 H 1.09000 * 113.74023 * 23.57200 * 6 4 3 34 34 H 1.09001 * 113.76500 * 90.69370 * 7 6 4 35 35 H 1.08996 * 113.76485 * 221.98615 * 7 6 4 36 36 H 1.09006 * 109.47175 * 299.99818 * 11 9 8 37 37 H 1.09001 * 109.47324 * 59.99429 * 11 9 8 38 38 H 0.97006 * 119.99435 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.46913 * 60.00457 * 24 23 21 40 40 H 1.09006 * 109.46761 * 179.97438 * 24 23 21 41 41 H 1.09000 * 109.47499 * 299.99747 * 24 23 21 42 42 H 1.09002 * 109.47229 * 52.94842 * 25 23 21 43 43 H 1.08997 * 109.47012 * 172.95242 * 25 23 21 44 44 H 1.09000 * 109.46820 * 292.94559 * 25 23 21 45 45 H 1.08993 * 109.47354 * 76.69329 * 26 23 21 46 46 H 1.08999 * 109.46834 * 196.70176 * 26 23 21 47 47 H 1.08999 * 109.46775 * 316.69389 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3077 1.7941 1.4327 5 1 1.3415 2.0512 1.8669 6 6 3.1866 0.9221 2.3476 7 6 3.7571 2.2443 2.8921 8 7 3.3356 2.8383 1.6086 9 6 3.7308 3.9058 0.8869 10 8 3.1467 4.1963 -0.1356 11 6 4.8982 4.7383 1.3503 12 16 5.1805 6.0876 0.1773 13 6 6.5580 6.8756 0.9431 14 1 6.9613 6.4826 1.8647 15 6 7.1256 8.0007 0.3613 16 7 6.6344 8.4793 -0.7622 17 14 8.5863 8.8357 1.1727 18 1 9.7142 7.8746 1.2706 19 1 9.0027 10.0057 0.3587 20 1 8.2036 9.2899 2.5338 21 6 2.1389 -1.1672 0.0005 22 8 3.3485 -1.1691 0.0881 23 6 1.3892 -2.4701 -0.1078 24 6 2.3867 -3.6229 -0.2394 25 6 0.5367 -2.6738 1.1462 26 6 0.4834 -2.4363 -1.3404 27 1 -0.3632 0.4755 -0.9111 28 1 -0.3633 -1.0267 0.0437 29 1 -0.3633 0.5513 0.8673 30 1 1.6653 1.9955 -0.6137 31 1 3.1964 1.1115 -0.4071 32 1 2.6218 0.3513 3.0846 33 1 3.9155 0.3167 1.8088 34 1 3.2165 2.6336 3.7549 35 1 4.8371 2.2298 3.0379 36 1 4.6813 5.1521 2.3352 37 1 5.7900 4.1140 1.4070 38 1 7.0313 9.2655 -1.1690 39 1 3.0320 -3.6469 0.6388 40 1 1.8445 -4.5653 -0.3173 41 1 2.9940 -3.4778 -1.1328 42 1 -0.0858 -1.7940 1.3092 43 1 -0.0989 -3.5494 1.0151 44 1 1.1876 -2.8231 2.0077 45 1 1.0840 -2.5895 -2.2370 46 1 -0.2636 -3.2263 -1.2640 47 1 -0.0155 -1.4689 -1.3982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757305586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:21 Heat of formation + Delta-G solvation = -45.616208 kcal Electronic energy + Delta-G solvation = -26362.754387 eV Core-core repulsion = 22672.959978 eV Total energy + Delta-G solvation = -3689.794409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.92180 -40.99728 -38.80130 -37.03476 -36.36592 -34.61906 -32.23039 -30.32354 -29.44355 -28.24496 -28.22040 -27.66931 -27.46244 -25.09170 -23.20046 -22.41794 -20.27837 -19.82438 -19.46330 -18.09811 -17.75054 -17.28051 -17.14217 -16.91259 -16.70183 -16.27180 -15.79689 -15.54944 -15.27323 -15.08926 -14.90891 -14.61981 -14.28914 -13.96815 -13.79585 -13.67711 -13.35766 -13.33948 -13.17997 -13.11757 -12.93788 -12.89083 -12.75481 -12.70799 -12.63176 -12.52772 -12.41362 -11.88981 -11.78348 -11.77451 -11.40985 -11.15883 -10.87151 -10.55540 -10.34229 -9.98814 -9.56654 -8.71683 -8.37529 -6.16788 1.15429 1.38524 1.41996 1.50957 1.52699 1.61749 1.74387 2.18958 2.24970 2.96228 3.17146 3.36474 3.45456 3.62556 3.78580 3.84343 3.94949 3.98646 4.02365 4.18158 4.20727 4.30156 4.37869 4.40321 4.50035 4.54105 4.56341 4.69154 4.73082 4.75386 4.81779 4.85357 4.86483 4.93622 4.96918 5.00009 5.10304 5.24717 5.27509 5.35753 5.37811 5.38492 5.45789 6.16384 6.36735 6.56491 7.02998 7.07609 7.15856 8.71665 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027675 B = 0.002334 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.492038 B =11995.764648 C =12128.651995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.605 5.605 3 C 0.121 3.879 4 C 0.122 3.878 5 H 0.117 0.883 6 C -0.129 4.129 7 C 0.102 3.898 8 N -0.644 5.644 9 C 0.551 3.449 10 O -0.564 6.564 11 C -0.119 4.119 12 S -0.148 6.148 13 C -0.548 4.548 14 H 0.081 0.919 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 1.001 2.999 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.260 1.260 21 C 0.514 3.486 22 O -0.578 6.578 23 C -0.082 4.082 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.162 4.162 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.272 0.728 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.096 0.904 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.160 -26.574 8.990 32.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.337 5.337 3 C -0.003 4.003 4 C 0.018 3.982 5 H 0.134 0.866 6 C -0.167 4.167 7 C -0.020 4.020 8 N -0.382 5.382 9 C 0.340 3.660 10 O -0.442 6.442 11 C -0.270 4.270 12 S 0.080 5.920 13 C -0.696 4.696 14 H 0.099 0.901 15 C -0.192 4.192 16 N -0.547 5.547 17 Si 0.822 3.178 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.185 1.185 21 C 0.304 3.696 22 O -0.457 6.457 23 C -0.085 4.085 24 C -0.183 4.183 25 C -0.206 4.206 26 C -0.219 4.219 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.115 0.885 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.331 -25.845 7.276 31.958 hybrid contribution 1.860 0.808 0.925 2.229 sum -15.471 -25.037 8.201 30.553 Atomic orbital electron populations 1.22832 0.77168 1.06374 1.03369 1.47747 1.08376 1.04325 1.73255 1.21236 0.97319 0.85424 0.96331 1.23357 0.94084 0.84522 0.96190 0.86563 1.23478 0.98988 0.95714 0.98536 1.23491 1.02380 0.89902 0.86178 1.50221 1.37918 1.25968 1.24048 1.19778 0.84030 0.78970 0.83192 1.90662 1.57470 1.69619 1.26490 1.23263 0.99295 1.00161 1.04295 1.85517 1.42494 1.29867 1.34161 1.23150 1.17620 1.16248 1.12586 0.90100 1.26164 1.00889 0.96674 0.95440 1.70182 1.42074 1.23416 1.19027 0.84978 0.77032 0.77479 0.78339 1.18782 1.20145 1.18465 1.21430 0.87549 0.86235 0.74365 1.90674 1.16418 1.87727 1.50914 1.20838 0.97035 0.90825 0.99821 1.21675 0.97956 0.97182 1.01535 1.22205 0.99490 1.04603 0.94335 1.22389 0.99505 1.05060 0.94945 0.91413 0.85513 0.90180 0.90911 0.92970 0.87051 0.90226 0.86570 0.89506 0.87639 0.88391 0.91894 0.93172 0.89456 0.94181 0.89737 0.88872 0.92480 0.93339 0.88527 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 7.83 127.77 1.00 1.41 16 2 N -0.60 -11.38 2.79 -846.74 -2.36 -13.74 16 3 C 0.12 3.23 4.98 86.38 0.43 3.66 16 4 C 0.12 2.82 4.50 45.09 0.20 3.02 16 5 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 6 C -0.13 -2.48 7.30 31.26 0.23 -2.26 16 7 C 0.10 2.03 8.61 86.48 0.74 2.78 16 8 N -0.64 -19.31 3.49 -813.92 -2.84 -22.15 16 9 C 0.55 22.73 7.96 87.65 0.70 23.43 16 10 O -0.56 -27.81 16.04 -3.03 -0.05 -27.86 16 11 C -0.12 -5.21 5.91 71.23 0.42 -4.79 16 12 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 13 C -0.55 -32.45 9.50 67.95 0.65 -31.80 16 14 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 15 C 0.01 0.77 5.49 84.86 0.47 1.23 16 16 N -0.91 -57.19 13.22 21.65 0.29 -56.90 16 17 Si 1.00 44.64 29.55 68.60 2.03 46.67 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 21 C 0.51 10.97 6.17 87.66 0.54 11.51 16 22 O -0.58 -17.74 13.84 -3.02 -0.04 -17.79 16 23 C -0.08 -1.06 0.75 -52.92 -0.04 -1.10 16 24 C -0.13 -1.85 7.72 71.98 0.56 -1.30 16 25 C -0.15 -1.01 8.09 71.98 0.58 -0.42 16 26 C -0.16 -1.48 8.07 71.98 0.58 -0.90 16 27 H 0.07 0.64 7.99 -2.39 -0.02 0.62 16 28 H 0.13 0.62 2.77 -2.39 -0.01 0.61 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 2.13 8.04 -2.38 -0.02 2.11 16 31 H 0.05 1.82 7.30 -2.39 -0.02 1.80 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 2.03 6.57 -2.39 -0.02 2.02 16 34 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 37 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 38 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 39 H 0.05 0.87 8.03 -2.39 -0.02 0.85 16 40 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 0.36 5.09 -2.39 -0.01 0.34 16 43 H 0.09 0.24 8.01 -2.39 -0.02 0.22 16 44 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 45 H 0.05 0.60 8.03 -2.39 -0.02 0.58 16 46 H 0.10 0.38 7.94 -2.39 -0.02 0.36 16 47 H 0.08 0.67 4.49 -2.39 -0.01 0.66 16 Total: -1.00 -85.74 385.47 3.87 -81.87 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.96 Total: 15.18 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 7.06 Total: 4.48 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -4.92 Total: -92.79 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.09 Total: -45.64 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -85.74 3.87 -81.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757305586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.253 kcal (2) G-P(sol) polarization free energy of solvation -85.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds