Wall clock time and date at job start Tue Mar 31 2020 16:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 N 1.46495 * 109.47049 * 120.00094 * 2 1 3 5 5 C 1.46493 * 120.00174 * 299.99541 * 4 2 1 6 6 C 1.34780 * 120.00090 * 120.00387 * 4 2 1 7 7 O 1.21284 * 119.99757 * 359.97438 * 6 4 2 8 8 C 1.50696 * 120.00179 * 179.97438 * 6 4 2 9 9 C 1.53346 * 109.40665 * 300.11875 * 8 6 4 10 10 C 1.53195 * 109.14901 * 178.68109 * 9 8 6 11 11 N 1.46919 * 108.89273 * 54.57640 * 10 9 8 12 12 C 1.34778 * 120.63255 * 126.34238 * 11 10 9 13 13 O 1.21279 * 120.00169 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00023 * 179.97438 * 12 11 10 15 15 S 1.81004 * 109.47124 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00170 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99808 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99655 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47281 * 89.99944 * 20 18 16 22 22 H 1.48503 * 109.47201 * 209.99866 * 20 18 16 23 23 H 1.48500 * 109.47189 * 329.99935 * 20 18 16 24 24 C 1.46933 * 118.74003 * 306.32349 * 11 10 9 25 25 C 1.53034 * 109.45957 * 179.97438 * 8 6 4 26 26 H 1.09002 * 109.47073 * 300.00218 * 1 2 3 27 27 H 1.08996 * 109.47273 * 59.99983 * 1 2 3 28 28 H 1.08999 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46851 * 240.00268 * 2 1 3 30 30 H 1.09005 * 109.47053 * 180.02562 * 3 2 1 31 31 H 1.09012 * 109.47052 * 299.99755 * 3 2 1 32 32 H 1.09002 * 109.47376 * 59.99968 * 3 2 1 33 33 H 1.09001 * 109.47451 * 270.00871 * 5 4 2 34 34 H 1.09005 * 109.47121 * 29.99991 * 5 4 2 35 35 H 1.09004 * 109.47676 * 150.00233 * 5 4 2 36 36 H 1.09000 * 109.45654 * 60.02314 * 8 6 4 37 37 H 1.08997 * 109.68637 * 58.71318 * 9 8 6 38 38 H 1.09002 * 109.47277 * 298.51574 * 9 8 6 39 39 H 1.09002 * 109.58720 * 294.71670 * 10 9 8 40 40 H 1.08996 * 109.58651 * 174.43567 * 10 9 8 41 41 H 1.09001 * 109.47488 * 299.99559 * 14 12 11 42 42 H 1.09001 * 109.47269 * 59.99982 * 14 12 11 43 43 H 0.96996 * 119.99581 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.58580 * 173.39910 * 24 11 10 45 45 H 1.09006 * 109.57831 * 293.67403 * 24 11 10 46 46 H 1.08994 * 109.50232 * 61.42124 * 25 8 6 47 47 H 1.09007 * 109.52628 * 301.33785 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5267 6 6 2.7933 -1.7864 1.0725 7 8 3.0860 -2.2010 -0.0291 8 6 3.2961 -2.4965 2.3029 9 6 4.1455 -1.5303 3.1374 10 6 4.6261 -2.2481 4.4026 11 7 5.3204 -3.4832 4.0142 12 6 6.5694 -3.7359 4.4529 13 8 7.1312 -2.9398 5.1751 14 6 7.2681 -5.0077 4.0461 15 16 8.9175 -5.0545 4.7900 16 6 9.4903 -6.6001 4.1674 17 1 8.8541 -7.1937 3.5276 18 6 10.7595 -7.0542 4.4983 19 7 11.5350 -6.3305 5.2777 20 14 11.3669 -8.6925 3.8377 21 1 12.0530 -8.4785 2.5381 22 1 12.3179 -9.2949 4.8062 23 1 10.2128 -9.6065 3.6435 24 6 4.6270 -4.4380 3.1387 25 6 4.1457 -3.6992 1.8860 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 2.4158 0.5274 2.8566 34 1 0.6905 0.2975 2.4843 35 1 1.6239 -1.0226 3.2292 36 1 2.4483 -2.8392 2.8962 37 1 3.5475 -0.6627 3.4163 38 1 5.0070 -1.2065 2.5534 39 1 3.7700 -2.4924 5.0317 40 1 5.3104 -1.6015 4.9519 41 1 6.6899 -5.8657 4.3892 42 1 7.3585 -5.0412 2.9604 43 1 12.4220 -6.6477 5.5086 44 1 5.3127 -5.2353 2.8519 45 1 3.7726 -4.8628 3.6656 46 1 5.0070 -3.3553 1.3135 47 1 3.5470 -4.3732 1.2732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041994961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:05 Heat of formation + Delta-G solvation = -73.279203 kcal Electronic energy + Delta-G solvation = -26188.469780 eV Core-core repulsion = 22497.475814 eV Total energy + Delta-G solvation = -3690.993966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89450 -39.52922 -37.21627 -36.60453 -33.74871 -32.41293 -32.04428 -31.45715 -29.00484 -27.66913 -27.45542 -26.00753 -25.41701 -23.39745 -22.44738 -20.90956 -19.49348 -18.96380 -17.68346 -17.57964 -16.80431 -16.32500 -15.77795 -15.60771 -15.24273 -14.78812 -14.64251 -14.54764 -14.36284 -14.00500 -13.84062 -13.51664 -13.42671 -13.12574 -12.90773 -12.72282 -12.65416 -12.60354 -12.47612 -12.16751 -12.09103 -11.77407 -11.72567 -11.37754 -11.27282 -11.04717 -11.00967 -10.93139 -10.81997 -10.73295 -9.90643 -9.78572 -9.34513 -9.05072 -9.04966 -8.53702 -8.20938 -6.48401 -6.20013 -3.90433 2.34426 2.59577 2.94125 3.06498 3.23989 3.27604 3.31840 3.61142 4.09941 4.21797 4.38836 4.47007 4.51662 4.62108 4.62228 4.81703 4.83595 4.92087 4.99070 5.02725 5.11365 5.13128 5.14833 5.15186 5.22091 5.27152 5.33805 5.44652 5.46650 5.51177 5.58557 5.61771 5.71587 5.74260 5.78205 5.85808 5.91012 5.93617 6.11065 6.14321 6.20714 6.63750 7.01004 7.55161 7.61536 7.88648 8.36998 8.56548 9.25366 10.87420 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.002299 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.586051 B =12176.058296 C =12664.859854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 C -0.161 4.161 4 N -0.613 5.613 5 C 0.072 3.928 6 C 0.520 3.480 7 O -0.537 6.537 8 C -0.103 4.103 9 C -0.136 4.136 10 C 0.116 3.884 11 N -0.621 5.621 12 C 0.536 3.464 13 O -0.518 6.518 14 C -0.151 4.151 15 S -0.062 6.062 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.109 3.891 25 C -0.115 4.115 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.821 12.991 -7.368 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 C -0.219 4.219 4 N -0.348 5.348 5 C -0.071 4.071 6 C 0.309 3.691 7 O -0.413 6.413 8 C -0.125 4.125 9 C -0.175 4.175 10 C -0.007 4.007 11 N -0.358 5.358 12 C 0.324 3.676 13 O -0.392 6.392 14 C -0.302 4.302 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.015 4.015 25 C -0.153 4.153 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.643 13.966 -6.783 29.126 hybrid contribution -0.414 -1.884 -1.258 2.303 sum -25.056 12.082 -8.041 28.956 Atomic orbital electron populations 1.22143 0.94949 1.02423 1.02372 1.21072 0.94002 0.93230 0.89194 1.22136 1.01891 0.95505 1.02348 1.47936 1.51301 1.28506 1.07023 1.21969 1.01021 1.00337 0.83741 1.20788 0.77281 0.79854 0.91179 1.90696 1.57221 1.65353 1.28032 1.21373 0.99550 0.96860 0.94690 1.22265 1.00222 0.97946 0.97027 1.21463 0.97149 0.86641 0.95477 1.48126 1.15530 1.21232 1.50884 1.20336 0.80084 0.87813 0.79335 1.90685 1.64348 1.48206 1.35945 1.23559 1.04659 0.97007 1.04942 1.85386 1.05073 1.28208 1.64856 1.22859 1.03521 1.05824 1.36031 0.90930 1.24994 0.95623 0.98138 0.94860 1.70019 1.09142 1.37438 1.33706 0.86169 0.78635 0.82032 0.78673 1.20269 1.20771 1.19684 1.21747 0.97615 0.91978 0.90147 1.21756 1.00235 0.95910 0.97426 0.92268 0.91357 0.92272 0.88131 0.92166 0.91425 0.92305 0.91994 0.90973 0.90516 0.88380 0.89485 0.90806 0.91700 0.88504 0.89231 0.89198 0.92208 0.88771 0.91379 0.90465 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.17 37.16 0.34 -0.51 16 2 C 0.13 0.93 3.25 -67.93 -0.22 0.71 16 3 C -0.16 -0.95 9.19 37.16 0.34 -0.61 16 4 N -0.61 -4.73 2.76 -173.93 -0.48 -5.21 16 5 C 0.07 0.33 7.86 59.84 0.47 0.80 16 6 C 0.52 5.45 7.08 -10.99 -0.08 5.37 16 7 O -0.54 -7.71 15.31 5.55 0.09 -7.63 16 8 C -0.10 -0.91 1.69 -91.58 -0.15 -1.07 16 9 C -0.14 -1.21 5.02 -26.45 -0.13 -1.34 16 10 C 0.12 1.27 6.42 -3.71 -0.02 1.25 16 11 N -0.62 -8.63 2.97 -172.77 -0.51 -9.14 16 12 C 0.54 10.20 7.72 -10.99 -0.08 10.11 16 13 O -0.52 -11.76 15.27 5.56 0.08 -11.68 16 14 C -0.15 -3.10 4.50 36.00 0.16 -2.94 16 15 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 16 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 20 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 25 C -0.11 -1.21 4.66 -26.62 -0.12 -1.33 16 26 H 0.06 0.25 6.66 -51.93 -0.35 -0.10 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.97 6.90 -51.93 -0.36 0.61 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 33 H 0.06 0.26 6.92 -51.93 -0.36 -0.10 16 34 H 0.07 0.23 6.43 -51.93 -0.33 -0.10 16 35 H 0.08 0.28 6.02 -51.93 -0.31 -0.03 16 36 H 0.10 0.66 7.40 -51.93 -0.38 0.28 16 37 H 0.09 0.55 4.51 -51.93 -0.23 0.31 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.25 7.00 -51.93 -0.36 0.89 16 41 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 42 H 0.09 1.73 7.69 -51.91 -0.40 1.33 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 47 H 0.08 0.83 8.07 -51.92 -0.42 0.41 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -36.41 379.27 -8.49 -44.91 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -7.56 Total: -2.63 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 0.67 Total: -1.41 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.26 Total: -39.93 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.17 Total: -19.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.41 -8.49 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041994961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.370 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds