Wall clock time and date at job start Tue Mar 31 2020 16:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 N 1.46495 * 109.47049 * 120.00094 * 2 1 3 5 5 C 1.46493 * 120.00174 * 299.99541 * 4 2 1 6 6 C 1.34780 * 120.00090 * 120.00387 * 4 2 1 7 7 O 1.21284 * 119.99757 * 359.97438 * 6 4 2 8 8 C 1.50696 * 120.00179 * 179.97438 * 6 4 2 9 9 C 1.53346 * 109.40665 * 300.11875 * 8 6 4 10 10 C 1.53195 * 109.14901 * 178.68109 * 9 8 6 11 11 N 1.46919 * 108.89273 * 54.57640 * 10 9 8 12 12 C 1.34778 * 120.63255 * 126.34238 * 11 10 9 13 13 O 1.21279 * 120.00169 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00023 * 179.97438 * 12 11 10 15 15 S 1.81004 * 109.47124 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00170 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99808 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99655 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47281 * 89.99944 * 20 18 16 22 22 H 1.48503 * 109.47201 * 209.99866 * 20 18 16 23 23 H 1.48500 * 109.47189 * 329.99935 * 20 18 16 24 24 C 1.46933 * 118.74003 * 306.32349 * 11 10 9 25 25 C 1.53034 * 109.45957 * 179.97438 * 8 6 4 26 26 H 1.09002 * 109.47073 * 300.00218 * 1 2 3 27 27 H 1.08996 * 109.47273 * 59.99983 * 1 2 3 28 28 H 1.08999 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46851 * 240.00268 * 2 1 3 30 30 H 1.09005 * 109.47053 * 180.02562 * 3 2 1 31 31 H 1.09012 * 109.47052 * 299.99755 * 3 2 1 32 32 H 1.09002 * 109.47376 * 59.99968 * 3 2 1 33 33 H 1.09001 * 109.47451 * 270.00871 * 5 4 2 34 34 H 1.09005 * 109.47121 * 29.99991 * 5 4 2 35 35 H 1.09004 * 109.47676 * 150.00233 * 5 4 2 36 36 H 1.09000 * 109.45654 * 60.02314 * 8 6 4 37 37 H 1.08997 * 109.68637 * 58.71318 * 9 8 6 38 38 H 1.09002 * 109.47277 * 298.51574 * 9 8 6 39 39 H 1.09002 * 109.58720 * 294.71670 * 10 9 8 40 40 H 1.08996 * 109.58651 * 174.43567 * 10 9 8 41 41 H 1.09001 * 109.47488 * 299.99559 * 14 12 11 42 42 H 1.09001 * 109.47269 * 59.99982 * 14 12 11 43 43 H 0.96996 * 119.99581 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.58580 * 173.39910 * 24 11 10 45 45 H 1.09006 * 109.57831 * 293.67403 * 24 11 10 46 46 H 1.08994 * 109.50232 * 61.42124 * 25 8 6 47 47 H 1.09007 * 109.52628 * 301.33785 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5267 6 6 2.7933 -1.7864 1.0725 7 8 3.0860 -2.2010 -0.0291 8 6 3.2961 -2.4965 2.3029 9 6 4.1455 -1.5303 3.1374 10 6 4.6261 -2.2481 4.4026 11 7 5.3204 -3.4832 4.0142 12 6 6.5694 -3.7359 4.4529 13 8 7.1312 -2.9398 5.1751 14 6 7.2681 -5.0077 4.0461 15 16 8.9175 -5.0545 4.7900 16 6 9.4903 -6.6001 4.1674 17 1 8.8541 -7.1937 3.5276 18 6 10.7595 -7.0542 4.4983 19 7 11.5350 -6.3305 5.2777 20 14 11.3669 -8.6925 3.8377 21 1 12.0530 -8.4785 2.5381 22 1 12.3179 -9.2949 4.8062 23 1 10.2128 -9.6065 3.6435 24 6 4.6270 -4.4380 3.1387 25 6 4.1457 -3.6992 1.8860 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 2.4158 0.5274 2.8566 34 1 0.6905 0.2975 2.4843 35 1 1.6239 -1.0226 3.2292 36 1 2.4483 -2.8392 2.8962 37 1 3.5475 -0.6627 3.4163 38 1 5.0070 -1.2065 2.5534 39 1 3.7700 -2.4924 5.0317 40 1 5.3104 -1.6015 4.9519 41 1 6.6899 -5.8657 4.3892 42 1 7.3585 -5.0412 2.9604 43 1 12.4220 -6.6477 5.5086 44 1 5.3127 -5.2353 2.8519 45 1 3.7726 -4.8628 3.6656 46 1 5.0070 -3.3553 1.3135 47 1 3.5470 -4.3732 1.2732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041994961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:03 Heat of formation + Delta-G solvation = -97.495001 kcal Electronic energy + Delta-G solvation = -26189.519856 eV Core-core repulsion = 22497.475814 eV Total energy + Delta-G solvation = -3692.044042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.73595 -40.71264 -38.24332 -37.44187 -34.68856 -34.58516 -32.81525 -32.42830 -30.43867 -28.11150 -27.95989 -27.71263 -26.84617 -24.29121 -23.30469 -21.77122 -20.46057 -19.99439 -19.45802 -18.38290 -18.04627 -17.12820 -16.93036 -16.86584 -16.71618 -16.29720 -15.87056 -15.34515 -15.17660 -15.08632 -14.85164 -14.50706 -14.48114 -14.27623 -13.90273 -13.77308 -13.46466 -13.36166 -13.17531 -13.13162 -13.06738 -12.90406 -12.85969 -12.77425 -12.61003 -12.25600 -12.19630 -11.83533 -11.75026 -11.69241 -11.63015 -11.14954 -10.87354 -10.72061 -10.27283 -9.68774 -9.66088 -8.67700 -8.35176 -6.13360 1.25445 1.41906 1.45385 1.54869 1.56054 1.59807 1.99834 2.12323 2.27041 2.98803 3.24261 3.40414 3.61060 3.66245 3.84658 3.92866 4.02332 4.13877 4.16982 4.24278 4.25014 4.30420 4.35019 4.43748 4.45164 4.61756 4.67667 4.68996 4.72399 4.73579 4.75734 4.83808 4.89061 4.92851 4.99188 5.05433 5.11376 5.25903 5.28125 5.33251 5.41222 5.58001 5.63621 6.19246 6.26800 6.37523 7.05987 7.14366 7.15556 8.74085 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.002299 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.586051 B =12176.058296 C =12664.859854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 C -0.155 4.155 4 N -0.608 5.608 5 C 0.060 3.940 6 C 0.514 3.486 7 O -0.588 6.588 8 C -0.096 4.096 9 C -0.124 4.124 10 C 0.111 3.889 11 N -0.608 5.608 12 C 0.533 3.467 13 O -0.565 6.565 14 C -0.126 4.126 15 S -0.151 6.151 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.257 1.257 24 C 0.106 3.894 25 C -0.110 4.110 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.043 0.957 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.271 0.729 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.044 0.956 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.082 12.649 -7.379 32.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.019 3.981 3 C -0.213 4.213 4 N -0.340 5.340 5 C -0.082 4.082 6 C 0.303 3.697 7 O -0.468 6.468 8 C -0.117 4.117 9 C -0.162 4.162 10 C -0.010 4.010 11 N -0.343 5.343 12 C 0.321 3.679 13 O -0.444 6.444 14 C -0.277 4.277 15 S 0.076 5.924 16 C -0.693 4.693 17 H 0.100 0.900 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.181 1.181 24 C -0.017 4.017 25 C -0.148 4.148 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.062 0.938 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.063 0.937 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.985 13.659 -6.798 31.874 hybrid contribution 0.440 -1.662 -1.308 2.160 sum -27.545 11.997 -8.105 31.118 Atomic orbital electron populations 1.22075 0.92992 1.02183 1.03788 1.21133 0.95468 0.93455 0.88065 1.22087 1.00578 0.94811 1.03784 1.48050 1.49968 1.27424 1.08568 1.22285 1.02405 1.01346 0.82120 1.21078 0.77325 0.80453 0.90861 1.90678 1.59324 1.66995 1.29836 1.21357 1.00219 0.95833 0.94304 1.22194 0.99599 0.98884 0.95539 1.21744 0.97469 0.85100 0.96723 1.48149 1.13832 1.22563 1.49716 1.20071 0.81571 0.86848 0.79411 1.90667 1.65921 1.49343 1.38440 1.23387 1.00400 0.99102 1.04789 1.85537 1.11029 1.29131 1.66691 1.23187 1.04166 1.05824 1.36157 0.90022 1.26135 0.95696 1.02455 0.94906 1.70182 1.09645 1.39691 1.35188 0.84954 0.78345 0.76677 0.78008 1.19448 1.20148 1.18128 1.22001 0.98342 0.91179 0.90131 1.21663 0.99479 0.96860 0.96845 0.90369 0.90435 0.93295 0.91341 0.94129 0.90376 0.90493 0.91163 0.88887 0.88814 0.84751 0.86131 0.93803 0.87809 0.90712 0.87234 0.88102 0.91980 0.89502 0.87636 0.93659 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.17 71.98 0.66 -0.61 16 2 C 0.12 1.63 3.25 44.99 0.15 1.78 16 3 C -0.15 -1.60 9.19 71.98 0.66 -0.94 16 4 N -0.61 -8.13 2.76 -822.59 -2.27 -10.41 16 5 C 0.06 0.31 7.86 127.77 1.00 1.31 16 6 C 0.51 10.17 7.08 87.66 0.62 10.79 16 7 O -0.59 -17.30 15.31 -3.04 -0.05 -17.34 16 8 C -0.10 -1.45 1.69 -11.41 -0.02 -1.47 16 9 C -0.12 -1.93 5.02 30.78 0.15 -1.78 16 10 C 0.11 2.19 6.42 86.36 0.55 2.74 16 11 N -0.61 -15.98 2.97 -818.91 -2.44 -18.42 16 12 C 0.53 20.38 7.72 87.66 0.68 21.06 16 13 O -0.57 -26.52 15.27 -3.03 -0.05 -26.57 16 14 C -0.13 -5.18 4.50 71.24 0.32 -4.86 16 15 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 16 C -0.55 -31.68 9.50 67.96 0.65 -31.03 16 17 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.74 5.49 84.86 0.47 1.21 16 19 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 20 Si 1.00 44.23 29.55 68.60 2.03 46.26 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 C 0.11 2.06 6.34 86.36 0.55 2.61 16 25 C -0.11 -2.16 4.66 30.67 0.14 -2.02 16 26 H 0.08 0.36 6.66 -2.39 -0.02 0.35 16 27 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 1.37 6.90 -2.39 -0.02 1.36 16 30 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 0.52 7.67 -2.39 -0.02 0.50 16 33 H 0.07 0.29 6.92 -2.39 -0.02 0.28 16 34 H 0.09 0.15 6.43 -2.38 -0.02 0.14 16 35 H 0.09 0.20 6.02 -2.38 -0.01 0.19 16 36 H 0.13 1.12 7.40 -2.39 -0.02 1.10 16 37 H 0.12 1.08 4.51 -2.39 -0.01 1.07 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.88 7.00 -2.39 -0.02 1.86 16 41 H 0.11 4.04 7.94 -2.39 -0.02 4.02 16 42 H 0.10 3.90 7.69 -2.40 -0.02 3.88 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.09 1.85 5.93 -2.39 -0.01 1.83 16 45 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 47 H 0.09 1.67 8.07 -2.38 -0.02 1.65 16 Total: -1.00 -85.11 379.27 3.89 -81.22 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.96 Total: 12.49 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 6.58 Total: -1.22 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -4.42 Total: -85.11 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.09 Total: -43.91 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -85.11 3.89 -81.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041994961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.277 kcal (2) G-P(sol) polarization free energy of solvation -85.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds