Wall clock time and date at job start Tue Mar 31 2020 15:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35688 * 117.00081 * 2 1 4 4 C 1.38611 * 120.15828 * 359.97438 * 3 2 1 5 5 C 1.38126 * 120.10942 * 180.02562 * 4 3 2 6 6 C 1.38569 * 120.43824 * 0.02562 * 5 4 3 7 7 C 1.37754 * 120.31775 * 359.97287 * 6 5 4 8 8 C 1.39928 * 119.88012 * 0.28449 * 7 6 5 9 9 C 1.46948 * 120.21273 * 179.72425 * 8 7 6 10 10 C 1.50698 * 119.99928 * 254.99481 * 9 8 7 11 11 C 1.34998 * 120.00239 * 74.99186 * 9 8 7 12 12 C 1.46239 * 120.00350 * 187.07504 * 11 9 8 13 13 O 1.21716 * 119.99920 * 5.95984 * 12 11 9 14 14 N 1.34778 * 120.00015 * 185.96352 * 12 11 9 15 15 C 1.46503 * 119.99661 * 179.97438 * 14 12 11 16 16 C 1.50693 * 109.47226 * 90.00147 * 15 14 12 17 17 H 1.08004 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00550 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99338 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00350 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47061 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46819 * 120.00087 * 20 18 16 23 23 H 1.48498 * 109.47385 * 240.00006 * 20 18 16 24 24 C 1.46498 * 120.00339 * 0.02562 * 14 12 11 25 25 C 1.52998 * 109.47267 * 89.99651 * 24 14 12 26 26 C 1.47200 * 109.46907 * 180.02562 * 25 24 14 27 27 N 6.97957 * 112.75730 * 98.46516 * 2 1 3 28 28 H 1.08996 * 109.47204 * 60.00461 * 1 2 3 29 29 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47029 * 299.99780 * 1 2 3 31 31 H 1.07995 * 119.94442 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.77976 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.83949 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.06106 * 179.97438 * 7 6 5 35 35 H 1.09007 * 109.46930 * 95.50629 * 10 9 8 36 36 H 1.09001 * 109.47082 * 215.50253 * 10 9 8 37 37 H 1.09001 * 109.47245 * 335.50938 * 10 9 8 38 38 H 1.08006 * 120.00073 * 7.07530 * 11 9 8 39 39 H 1.09005 * 109.47156 * 209.99838 * 15 14 12 40 40 H 1.08999 * 109.46988 * 329.99711 * 15 14 12 41 41 H 0.97001 * 119.99770 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.46774 * 210.00339 * 24 14 12 43 43 H 1.09006 * 109.46505 * 330.00107 * 24 14 12 44 44 H 1.08998 * 109.47083 * 300.00288 * 25 24 14 45 45 H 1.08994 * 109.46799 * 60.00382 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2933 2.3736 -0.0005 5 6 1.9215 3.6037 -0.0011 6 6 3.3047 3.6856 -0.0016 7 6 4.0692 2.5397 -0.0011 8 6 3.4467 1.2865 -0.0060 9 6 4.2551 0.0593 -0.0115 10 6 4.3867 -0.7505 -1.2756 11 6 4.8799 -0.3426 1.1157 12 6 5.8066 -1.4731 1.0748 13 8 6.0982 -1.9826 0.0086 14 7 6.3377 -1.9509 2.2177 15 6 7.2656 -3.0838 2.1766 16 6 8.6758 -2.5730 2.0310 17 1 8.8623 -1.5107 1.9743 18 6 9.7282 -3.4617 1.9703 19 7 9.5011 -4.7554 2.0389 20 14 11.4762 -2.8286 1.7891 21 1 11.4620 -1.3446 1.7345 22 1 12.2866 -3.2730 2.9515 23 1 12.0698 -3.3647 0.5379 24 6 5.9862 -1.3380 3.5010 25 6 4.7557 -2.0385 4.0807 26 6 4.4022 -1.4223 5.3699 27 7 4.1289 -0.9475 6.3661 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2148 2.3190 -0.0014 32 1 1.3305 4.5078 -0.0011 33 1 3.7858 4.6526 -0.0016 34 1 5.1470 2.6083 -0.0019 35 1 5.3012 -0.4656 -1.7960 36 1 4.4264 -1.8107 -1.0254 37 1 3.5280 -0.5609 -1.9196 38 1 4.6953 0.1708 2.0478 39 1 7.1803 -3.6569 3.0999 40 1 7.0212 -3.7230 1.3283 41 1 10.2414 -5.3807 1.9957 42 1 6.8220 -1.4397 4.1932 43 1 5.7655 -0.2812 3.3506 44 1 3.9199 -1.9367 3.3885 45 1 4.9763 -3.0952 4.2311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066629268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:29 Heat of formation + Delta-G solvation = 0.403477 kcal Electronic energy + Delta-G solvation = -27388.656147 eV Core-core repulsion = 23565.413350 eV Total energy + Delta-G solvation = -3823.242797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.40969 -39.24380 -37.60387 -36.81836 -35.44226 -34.47368 -32.81827 -30.77851 -30.50576 -30.04811 -28.23565 -27.49925 -26.51310 -23.98416 -23.80392 -22.59646 -22.18103 -19.94975 -18.32037 -17.76056 -17.40040 -16.78623 -16.38102 -16.29111 -15.96155 -15.66593 -15.15093 -14.71428 -14.60990 -14.39412 -14.12350 -13.91801 -13.74014 -13.49847 -13.07225 -12.88274 -12.62046 -12.44552 -12.36888 -12.30788 -12.12206 -11.95716 -11.69892 -11.68634 -11.35926 -11.28470 -11.22145 -11.06316 -10.90146 -10.73763 -10.55505 -10.13173 -9.62299 -9.17397 -8.84570 -8.73720 -8.43474 -8.29009 -7.69979 -6.04659 -4.08757 0.99140 1.23333 1.69838 2.80538 2.87595 3.05261 3.30714 3.38642 3.42273 3.51344 3.77217 3.94256 4.28662 4.44999 4.55207 4.63289 4.81081 4.86673 4.89049 5.06889 5.10230 5.19844 5.23454 5.25268 5.27021 5.30225 5.42237 5.50634 5.57918 5.72957 5.89928 5.92634 6.00102 6.09094 6.17289 6.22235 6.28122 6.39077 6.54067 6.67969 6.79929 7.07235 7.19615 7.43874 7.52046 7.64124 7.92313 8.22945 8.37565 8.90738 9.09116 9.56661 11.03353 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.003365 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.493350 B = 8318.261974 C = 9257.153921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.141 3.859 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.157 4.157 7 C -0.063 4.063 8 C -0.087 4.087 9 C 0.006 3.994 10 C -0.110 4.110 11 C -0.209 4.209 12 C 0.540 3.460 13 O -0.530 6.530 14 N -0.594 5.594 15 C 0.245 3.755 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.119 3.881 25 C -0.051 4.051 26 C 0.219 3.781 27 N -0.449 5.449 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.122 0.878 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.262 0.738 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.324 13.109 -3.657 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.095 3.905 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.175 4.175 7 C -0.081 4.081 8 C -0.088 4.088 9 C 0.004 3.996 10 C -0.166 4.166 11 C -0.230 4.230 12 C 0.330 3.670 13 O -0.410 6.410 14 N -0.324 5.324 15 C 0.126 3.874 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.007 4.007 25 C -0.093 4.093 26 C -0.099 4.099 27 N -0.126 5.126 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.140 0.860 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.126 0.874 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.379 13.132 -2.724 22.752 hybrid contribution 0.793 0.351 -0.249 0.902 sum -17.586 13.483 -2.973 22.358 Atomic orbital electron populations 1.23084 0.78484 1.04146 1.01153 1.86117 1.21126 1.26457 1.88065 1.19151 0.91254 0.84439 0.95643 1.21156 0.99948 0.92272 1.09601 1.20997 0.94711 0.96863 0.97301 1.20980 0.93767 0.98443 1.04338 1.21211 1.00250 0.90238 0.96443 1.18348 0.89577 0.93786 1.07042 1.20775 0.91606 0.91368 0.95872 1.21019 1.00840 1.01216 0.93479 1.22998 1.01318 1.00478 0.98221 1.18062 0.81319 0.83430 0.84224 1.90768 1.61289 1.60195 1.28708 1.48088 1.45396 1.34950 1.03998 1.19331 0.86651 0.82945 0.98481 1.21475 0.91155 0.93416 1.50354 0.92327 1.24917 0.99246 0.94765 0.95119 1.69935 1.31865 1.01096 1.50447 0.86474 0.84441 0.79034 0.77663 1.19804 1.21047 1.20921 1.21302 0.95576 0.96491 0.87379 1.19930 1.01073 1.01586 0.86663 1.29191 0.92889 0.93243 0.94588 1.81226 1.09472 1.09884 1.12068 0.92714 0.88067 0.92706 0.85427 0.85902 0.85666 0.84849 0.90441 0.88743 0.93361 0.85988 0.94839 0.93512 0.92800 0.88974 0.90548 0.87408 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.49 9.95 -18.77 -0.19 -3.67 16 3 C 0.14 1.63 6.70 -38.64 -0.26 1.37 16 4 C -0.21 -1.97 9.03 -39.48 -0.36 -2.33 16 5 C -0.08 -0.70 10.03 -39.50 -0.40 -1.09 16 6 C -0.16 -1.45 10.02 -39.64 -0.40 -1.85 16 7 C -0.06 -0.70 9.79 -39.13 -0.38 -1.08 16 8 C -0.09 -1.09 5.26 -104.93 -0.55 -1.64 16 9 C 0.01 0.08 5.00 -102.25 -0.51 -0.43 16 10 C -0.11 -1.67 8.48 36.00 0.31 -1.37 16 11 C -0.21 -3.20 8.93 -37.52 -0.34 -3.53 16 12 C 0.54 10.44 7.46 -13.05 -0.10 10.35 16 13 O -0.53 -12.21 12.90 5.17 0.07 -12.14 16 14 N -0.59 -11.36 2.46 -176.77 -0.43 -11.79 16 15 C 0.24 5.90 5.16 -5.20 -0.03 5.88 16 16 C -0.53 -14.21 9.39 -34.44 -0.32 -14.53 16 17 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 20 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.12 1.72 5.11 -4.04 -0.02 1.69 16 25 C -0.05 -0.59 6.03 -29.52 -0.18 -0.77 16 26 C 0.22 2.86 15.44 -20.73 -0.32 2.54 16 27 N -0.45 -6.95 18.54 42.19 0.78 -6.17 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 32 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.08 1.23 8.06 -51.92 -0.42 0.81 16 36 H 0.09 1.64 6.16 -51.93 -0.32 1.32 16 37 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.12 1.59 6.15 -52.48 -0.32 1.27 16 39 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 43 H 0.08 0.96 6.02 -51.93 -0.31 0.65 16 44 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -33.45 389.47 -7.37 -40.82 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.22 Total: -0.32 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.96 Total: -4.01 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 1.08 Total: -42.96 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.12 Total: -15.81 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.45 -7.37 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066629268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.219 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds