Wall clock time and date at job start Tue Mar 31 2020 15:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35688 * 117.00081 * 2 1 4 4 C 1.38611 * 120.15828 * 359.97438 * 3 2 1 5 5 C 1.38126 * 120.10942 * 180.02562 * 4 3 2 6 6 C 1.38569 * 120.43824 * 0.02562 * 5 4 3 7 7 C 1.37754 * 120.31775 * 359.97287 * 6 5 4 8 8 C 1.39928 * 119.88012 * 0.28449 * 7 6 5 9 9 C 1.46948 * 120.21273 * 179.72425 * 8 7 6 10 10 C 1.50698 * 119.99928 * 254.99481 * 9 8 7 11 11 C 1.34998 * 120.00239 * 74.99186 * 9 8 7 12 12 C 1.46239 * 120.00350 * 187.07504 * 11 9 8 13 13 O 1.21716 * 119.99920 * 5.95984 * 12 11 9 14 14 N 1.34778 * 120.00015 * 185.96352 * 12 11 9 15 15 C 1.46503 * 119.99661 * 179.97438 * 14 12 11 16 16 C 1.50693 * 109.47226 * 90.00147 * 15 14 12 17 17 H 1.08004 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00550 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99338 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00350 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47061 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46819 * 120.00087 * 20 18 16 23 23 H 1.48498 * 109.47385 * 240.00006 * 20 18 16 24 24 C 1.46498 * 120.00339 * 0.02562 * 14 12 11 25 25 C 1.52998 * 109.47267 * 89.99651 * 24 14 12 26 26 C 1.47200 * 109.46907 * 180.02562 * 25 24 14 27 27 N 6.97957 * 112.75730 * 98.46516 * 2 1 3 28 28 H 1.08996 * 109.47204 * 60.00461 * 1 2 3 29 29 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47029 * 299.99780 * 1 2 3 31 31 H 1.07995 * 119.94442 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.77976 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.83949 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.06106 * 179.97438 * 7 6 5 35 35 H 1.09007 * 109.46930 * 95.50629 * 10 9 8 36 36 H 1.09001 * 109.47082 * 215.50253 * 10 9 8 37 37 H 1.09001 * 109.47245 * 335.50938 * 10 9 8 38 38 H 1.08006 * 120.00073 * 7.07530 * 11 9 8 39 39 H 1.09005 * 109.47156 * 209.99838 * 15 14 12 40 40 H 1.08999 * 109.46988 * 329.99711 * 15 14 12 41 41 H 0.97001 * 119.99770 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.46774 * 210.00339 * 24 14 12 43 43 H 1.09006 * 109.46505 * 330.00107 * 24 14 12 44 44 H 1.08998 * 109.47083 * 300.00288 * 25 24 14 45 45 H 1.08994 * 109.46799 * 60.00382 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2933 2.3736 -0.0005 5 6 1.9215 3.6037 -0.0011 6 6 3.3047 3.6856 -0.0016 7 6 4.0692 2.5397 -0.0011 8 6 3.4467 1.2865 -0.0060 9 6 4.2551 0.0593 -0.0115 10 6 4.3867 -0.7505 -1.2756 11 6 4.8799 -0.3426 1.1157 12 6 5.8066 -1.4731 1.0748 13 8 6.0982 -1.9826 0.0086 14 7 6.3377 -1.9509 2.2177 15 6 7.2656 -3.0838 2.1766 16 6 8.6758 -2.5730 2.0310 17 1 8.8623 -1.5107 1.9743 18 6 9.7282 -3.4617 1.9703 19 7 9.5011 -4.7554 2.0389 20 14 11.4762 -2.8286 1.7891 21 1 11.4620 -1.3446 1.7345 22 1 12.2866 -3.2730 2.9515 23 1 12.0698 -3.3647 0.5379 24 6 5.9862 -1.3380 3.5010 25 6 4.7557 -2.0385 4.0807 26 6 4.4022 -1.4223 5.3699 27 7 4.1289 -0.9475 6.3661 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2148 2.3190 -0.0014 32 1 1.3305 4.5078 -0.0011 33 1 3.7858 4.6526 -0.0016 34 1 5.1470 2.6083 -0.0019 35 1 5.3012 -0.4656 -1.7960 36 1 4.4264 -1.8107 -1.0254 37 1 3.5280 -0.5609 -1.9196 38 1 4.6953 0.1708 2.0478 39 1 7.1803 -3.6569 3.0999 40 1 7.0212 -3.7230 1.3283 41 1 10.2414 -5.3807 1.9957 42 1 6.8220 -1.4397 4.1932 43 1 5.7655 -0.2812 3.3506 44 1 3.9199 -1.9367 3.3885 45 1 4.9763 -3.0952 4.2311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066629268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:28 Heat of formation + Delta-G solvation = -18.070501 kcal Electronic energy + Delta-G solvation = -27389.457239 eV Core-core repulsion = 23565.413350 eV Total energy + Delta-G solvation = -3824.043889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25107 -40.65100 -38.37678 -38.01091 -36.82995 -35.67403 -34.80857 -32.16111 -31.31413 -30.89128 -29.79809 -28.20619 -27.98870 -25.35267 -25.17136 -23.90207 -22.90903 -21.16650 -19.42709 -18.78586 -18.65634 -18.29529 -18.08094 -17.03719 -16.93863 -16.60757 -16.45906 -16.06410 -15.83573 -15.60351 -15.35550 -14.93332 -14.74531 -14.60491 -14.36927 -14.23153 -13.80257 -13.67987 -13.60677 -13.53653 -13.23556 -13.17924 -12.90845 -12.80284 -12.77025 -12.54743 -12.45469 -12.40062 -12.15252 -11.97226 -11.84596 -11.75651 -11.61470 -10.57168 -10.35707 -10.15580 -9.78465 -9.35061 -9.06739 -8.15498 -6.27864 0.14031 0.47985 0.56768 1.40220 1.42573 1.53510 1.69907 1.80966 2.31089 2.40121 2.46690 2.53387 2.78966 3.12762 3.16772 3.61665 3.95648 3.97487 4.06594 4.10104 4.14042 4.27548 4.32592 4.43766 4.48341 4.50288 4.54400 4.64417 4.71738 4.78672 4.82129 4.86085 4.97590 5.03429 5.08372 5.20702 5.31643 5.35575 5.42879 5.50630 5.56969 5.65816 5.68261 5.86583 5.93365 6.16214 6.49004 6.57535 6.79207 6.85729 7.36981 7.57488 8.91062 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.003365 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.493350 B = 8318.261974 C = 9257.153921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.131 3.869 4 C -0.211 4.211 5 C -0.074 4.074 6 C -0.158 4.158 7 C -0.072 4.072 8 C -0.116 4.116 9 C 0.026 3.974 10 C -0.106 4.106 11 C -0.217 4.217 12 C 0.534 3.466 13 O -0.579 6.579 14 N -0.595 5.595 15 C 0.261 3.739 16 C -0.538 4.538 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.284 1.284 24 C 0.116 3.884 25 C -0.037 4.037 26 C 0.246 3.754 27 N -0.486 5.486 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.149 0.851 39 H 0.033 0.967 40 H 0.005 0.995 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 15.841 -3.271 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.085 3.915 4 C -0.230 4.230 5 C -0.092 4.092 6 C -0.176 4.176 7 C -0.090 4.090 8 C -0.117 4.117 9 C 0.024 3.976 10 C -0.162 4.162 11 C -0.238 4.238 12 C 0.327 3.673 13 O -0.462 6.462 14 N -0.325 5.325 15 C 0.140 3.860 16 C -0.576 4.576 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.210 1.210 24 C -0.009 4.009 25 C -0.078 4.078 26 C -0.071 4.071 27 N -0.164 5.164 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.166 0.834 39 H 0.051 0.949 40 H 0.024 0.976 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.146 0.854 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.011 15.890 -2.301 25.656 hybrid contribution 1.181 -0.461 -0.455 1.347 sum -18.830 15.429 -2.756 24.499 Atomic orbital electron populations 1.23347 0.76456 1.05370 1.02432 1.86078 1.23365 1.26895 1.88143 1.19286 0.90993 0.85306 0.95889 1.21469 1.01170 0.91695 1.08637 1.21425 0.94741 0.97797 0.95226 1.21282 0.94243 0.98705 1.03412 1.21315 1.00570 0.90371 0.96753 1.18302 0.90160 0.93106 1.10150 1.20914 0.90424 0.91538 0.94759 1.20908 1.00912 0.99895 0.94483 1.22818 1.01554 0.99577 0.99816 1.18722 0.81379 0.83858 0.83386 1.90747 1.63124 1.61874 1.30419 1.47957 1.44598 1.33974 1.05970 1.18801 0.86631 0.84081 0.96508 1.21775 0.92749 0.93122 1.49988 0.92978 1.25728 1.03245 0.94979 0.94875 1.70038 1.33079 1.02147 1.51349 0.85497 0.79763 0.78590 0.77740 1.19296 1.19847 1.20992 1.21491 0.96511 0.97804 0.85096 1.19812 1.00446 1.01307 0.86244 1.29152 0.91719 0.92153 0.94113 1.81263 1.10833 1.11130 1.13203 0.91326 0.87068 0.91403 0.83009 0.82805 0.83397 0.84911 0.91596 0.91284 0.91759 0.83357 0.94868 0.97641 0.92601 0.89661 0.88143 0.85362 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.07 9.95 -90.06 -0.90 -7.97 16 3 C 0.13 2.77 6.70 22.88 0.15 2.93 16 4 C -0.21 -3.24 9.03 22.33 0.20 -3.04 16 5 C -0.07 -0.98 10.03 22.32 0.22 -0.76 16 6 C -0.16 -2.42 10.02 22.23 0.22 -2.20 16 7 C -0.07 -1.46 9.79 22.56 0.22 -1.24 16 8 C -0.12 -2.78 5.26 -20.06 -0.11 -2.89 16 9 C 0.03 0.75 5.00 -18.33 -0.09 0.65 16 10 C -0.11 -3.36 8.48 71.24 0.60 -2.75 16 11 C -0.22 -6.57 8.93 23.60 0.21 -6.35 16 12 C 0.53 21.27 7.46 86.32 0.64 21.91 16 13 O -0.58 -28.19 12.90 -4.40 -0.06 -28.24 16 14 N -0.60 -23.20 2.46 -831.39 -2.04 -25.24 16 15 C 0.26 13.08 5.16 85.63 0.44 13.52 16 16 C -0.54 -29.81 9.39 25.60 0.24 -29.57 16 17 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 18 C 0.01 0.60 5.46 84.65 0.46 1.06 16 19 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 20 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 C 0.12 3.23 5.11 86.38 0.44 3.68 16 25 C -0.04 -0.81 6.03 28.79 0.17 -0.63 16 26 C 0.25 6.01 15.44 89.43 1.38 7.39 16 27 N -0.49 -14.41 18.54 20.02 0.37 -14.04 16 28 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 31 H 0.15 1.50 6.30 -2.91 -0.02 1.49 16 32 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.07 2.22 8.06 -2.38 -0.02 2.20 16 36 H 0.07 2.56 6.16 -2.39 -0.01 2.55 16 37 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 38 H 0.15 3.61 6.15 -2.91 -0.02 3.59 16 39 H 0.03 1.65 8.07 -2.38 -0.02 1.63 16 40 H 0.01 0.32 7.42 -2.39 -0.02 0.30 16 41 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 43 H 0.10 2.34 6.02 -2.38 -0.01 2.33 16 44 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.12 2.62 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -75.22 389.47 7.23 -67.99 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.00 Total: 12.25 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 6.54 Total: 3.04 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -1.39 Total: -93.49 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.95 Total: -36.21 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -75.22 7.23 -67.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066629268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.923 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds