Wall clock time and date at job start Tue Mar 31 2020 16:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46904 * 109.46949 * 19.43994 * 3 2 1 5 5 C 1.46855 * 110.99848 * 169.99756 * 4 3 2 6 6 C 1.53027 * 109.52130 * 185.83855 * 5 4 3 7 7 C 1.53121 * 109.28092 * 300.81732 * 6 5 4 8 8 C 1.50700 * 109.52552 * 177.56253 * 7 6 5 9 9 O 1.21296 * 119.99983 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99912 * 180.02562 * 8 7 6 11 11 C 1.39992 * 119.99998 * 175.48452 * 10 8 7 12 12 C 1.38919 * 120.00394 * 215.12138 * 11 10 8 13 13 C 1.38006 * 120.00232 * 180.02562 * 12 11 10 14 14 C 1.38906 * 119.99859 * 0.02562 * 13 12 11 15 15 O 1.35782 * 120.00070 * 179.97438 * 14 13 12 16 16 C 1.34812 * 116.99431 * 5.34641 * 15 14 13 17 17 H 1.08000 * 120.00442 * 354.96241 * 16 15 14 18 18 C 1.38633 * 119.99847 * 174.96299 * 16 15 14 19 19 N 1.31572 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00217 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47103 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47113 * 120.00005 * 20 18 16 23 23 H 1.48503 * 109.47421 * 240.00151 * 20 18 16 24 24 C 1.38907 * 120.00407 * 0.25082 * 14 13 12 25 25 C 1.38011 * 120.00022 * 359.45154 * 24 14 13 26 26 C 1.53119 * 109.15961 * 57.65712 * 7 6 5 27 27 C 1.46843 * 110.99808 * 294.20259 * 4 3 2 28 28 H 4.40879 * 5.52113 * 179.97438 * 4 1 2 29 29 H 1.08993 * 109.47137 * 259.43599 * 3 2 1 30 30 H 1.09003 * 109.46707 * 139.43432 * 3 2 1 31 31 H 1.09000 * 109.45790 * 65.81636 * 5 4 3 32 32 H 1.09003 * 109.44795 * 305.84798 * 5 4 3 33 33 H 1.09004 * 109.49963 * 180.88244 * 6 5 4 34 34 H 1.08993 * 109.50757 * 60.76234 * 6 5 4 35 35 H 1.09000 * 109.52156 * 297.69300 * 7 6 5 36 36 H 0.97001 * 120.00062 * 355.47858 * 10 8 7 37 37 H 1.08003 * 120.00030 * 359.97438 * 12 11 10 38 38 H 1.07994 * 119.99884 * 180.02562 * 13 12 11 39 39 H 0.96999 * 120.00230 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.00026 * 179.71094 * 24 14 13 41 41 H 1.07998 * 119.99912 * 180.27192 * 25 24 14 42 42 H 1.09003 * 109.50180 * 62.28381 * 26 7 6 43 43 H 1.09000 * 109.50702 * 182.40470 * 26 7 6 44 44 H 1.08994 * 109.46901 * 294.17989 * 27 4 3 45 45 H 1.09000 * 109.46235 * 54.15993 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3052 -0.4610 5 6 4.5846 -1.2688 -0.7009 6 6 5.0346 -2.5959 -1.3158 7 6 4.6853 -3.7401 -0.3601 8 6 5.0719 -5.0552 -0.9864 9 8 5.5768 -5.0766 -2.0891 10 7 4.8557 -6.2075 -0.3217 11 6 5.1267 -7.4338 -0.9402 12 6 4.3217 -8.5358 -0.6804 13 6 4.5893 -9.7448 -1.2897 14 6 5.6638 -9.8599 -2.1624 15 8 5.9273 -11.0496 -2.7615 16 6 5.0454 -12.0479 -2.5541 17 1 4.2212 -11.9070 -1.8705 18 6 5.1965 -13.2554 -3.2182 19 7 6.2008 -13.4272 -4.0506 20 14 3.9749 -14.6390 -2.9302 21 1 2.9461 -14.1960 -1.9553 22 1 3.3188 -14.9952 -4.2140 23 1 4.6884 -15.8254 -2.3930 24 6 6.4722 -8.7596 -2.4179 25 6 6.2010 -7.5489 -1.8133 26 6 3.1785 -3.7260 -0.0886 27 6 2.7822 -2.3660 0.4907 28 1 -1.0497 -0.0004 0.0001 29 1 3.0092 0.1892 1.0102 30 1 3.0089 0.7815 -0.6683 31 1 5.1053 -1.1110 0.2436 32 1 4.8187 -0.4534 -1.3853 33 1 6.1121 -2.5744 -1.4792 34 1 4.5246 -2.7477 -2.2670 35 1 5.2264 -3.6099 0.5771 36 1 4.5123 -6.1871 0.5853 37 1 3.4870 -8.4466 -0.0009 38 1 3.9632 -10.6013 -1.0880 39 1 6.3067 -14.2722 -4.5150 40 1 7.3104 -8.8504 -3.0928 41 1 6.8270 -6.6923 -2.0154 42 1 2.6392 -3.8955 -1.0206 43 1 2.9297 -4.5118 0.6246 44 1 3.3113 -2.2032 1.4296 45 1 1.7075 -2.3477 0.6716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067131528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:09 Heat of formation + Delta-G solvation = 24.345585 kcal Electronic energy + Delta-G solvation = -26490.439867 eV Core-core repulsion = 22668.235278 eV Total energy + Delta-G solvation = -3822.204589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.56871 -39.22734 -38.44933 -36.51157 -34.84200 -33.97354 -32.51129 -32.12784 -31.14192 -30.20239 -28.46075 -27.22069 -25.37326 -24.11255 -23.50615 -22.27517 -21.56836 -20.43628 -19.78052 -18.50808 -18.06053 -17.51565 -17.08441 -16.27470 -16.20506 -15.65007 -15.25797 -15.01197 -14.55917 -14.52277 -14.11874 -14.05525 -13.76452 -13.56724 -13.38338 -13.18194 -13.11906 -12.80873 -12.55291 -12.32776 -11.82853 -11.73543 -11.55229 -11.50870 -11.48652 -11.08663 -11.04444 -10.86181 -10.70793 -10.67762 -10.48937 -10.43247 -9.67774 -9.52722 -9.20131 -8.78764 -8.69958 -8.19558 -6.92478 -6.43727 -4.01810 2.10487 2.21935 2.33133 2.50075 2.83963 3.12995 3.14295 3.19720 3.31518 3.62340 3.97473 4.01500 4.34138 4.44635 4.53773 4.63712 4.81677 4.88391 4.92769 5.00764 5.08695 5.10515 5.18008 5.21640 5.33795 5.36228 5.47804 5.54615 5.57483 5.63974 5.73000 5.80652 5.89343 6.11571 6.16432 6.24053 6.29880 6.56792 6.64306 6.81977 6.86628 7.00098 7.17559 7.23409 7.27583 7.42026 7.72589 7.80170 8.00839 8.39230 9.01689 9.72364 10.74328 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.002009 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.258467 B =13936.750648 C =14651.160524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.163 3.837 4 N -0.537 5.537 5 C 0.057 3.943 6 C -0.096 4.096 7 C -0.106 4.106 8 C 0.510 3.490 9 O -0.524 6.524 10 N -0.660 5.660 11 C 0.034 3.966 12 C -0.090 4.090 13 C -0.220 4.220 14 C 0.147 3.853 15 O -0.177 6.177 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.179 4.179 25 C -0.067 4.067 26 C -0.108 4.108 27 C 0.058 3.942 28 H 0.217 0.783 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.400 0.600 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.269 0.731 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 24.444 12.339 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.036 3.964 4 N -0.262 5.262 5 C -0.070 4.070 6 C -0.134 4.134 7 C -0.128 4.128 8 C 0.297 3.703 9 O -0.400 6.400 10 N -0.305 5.305 11 C -0.058 4.058 12 C -0.110 4.110 13 C -0.240 4.240 14 C 0.093 3.907 15 O -0.080 6.080 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.199 4.199 25 C -0.087 4.087 26 C -0.146 4.146 27 C -0.070 4.070 28 H 0.234 0.766 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.235 0.765 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.778 24.078 10.796 27.244 hybrid contribution -0.749 -0.572 1.436 1.718 sum -7.527 23.505 12.232 27.546 Atomic orbital electron populations 1.24924 0.95936 0.99470 1.01098 1.22813 0.94182 1.00978 1.00257 1.18980 0.85253 0.92267 0.99882 1.61886 1.14477 1.03367 1.46451 1.22151 0.86142 0.98913 0.99808 1.21406 1.01901 0.91131 0.99006 1.21386 0.97863 0.93097 1.00433 1.20591 0.78686 0.85225 0.85783 1.90706 1.42236 1.86990 1.20058 1.43248 1.65573 1.04504 1.17152 1.17274 0.99226 0.85027 1.04282 1.20484 0.97627 0.92357 1.00568 1.20972 1.01889 0.98151 1.02989 1.19420 0.92776 0.87049 0.91452 1.83993 1.45994 1.15693 1.62359 1.21360 1.07609 0.90944 1.26830 0.89031 1.25295 0.97748 0.98017 0.95553 1.70056 1.28559 1.25445 1.25612 0.85645 0.79322 0.79925 0.78500 1.19132 1.20152 1.20174 1.20161 1.02940 0.90954 1.05870 1.20739 0.95306 0.96644 0.96047 1.21591 0.93784 0.96565 1.02626 1.22105 1.01228 0.90839 0.92797 0.76623 0.92454 0.88357 0.94468 0.89984 0.90367 0.89875 0.88891 0.76537 0.87228 0.85132 0.92074 0.86150 0.85349 0.90155 0.90775 0.94454 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 19.25 29.55 0.57 -0.89 16 2 C -0.18 -1.50 12.34 -37.12 -0.46 -1.96 16 3 C 0.16 1.10 5.46 -6.61 -0.04 1.06 16 4 N -0.54 -4.29 4.63 -238.18 -1.10 -5.39 16 5 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 6 C -0.10 -0.90 4.68 -26.65 -0.12 -1.03 16 7 C -0.11 -0.98 2.59 -91.65 -0.24 -1.22 16 8 C 0.51 6.96 7.00 -10.99 -0.08 6.88 16 9 O -0.52 -9.35 13.42 5.54 0.07 -9.28 16 10 N -0.66 -8.84 5.22 -9.82 -0.05 -8.89 16 11 C 0.03 0.61 6.30 -83.63 -0.53 0.08 16 12 C -0.09 -1.62 9.96 -39.41 -0.39 -2.02 16 13 C -0.22 -4.75 9.16 -39.42 -0.36 -5.12 16 14 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 15 O -0.18 -5.10 9.76 0.00 0.00 -5.10 16 16 C -0.39 -10.95 9.48 30.88 0.29 -10.66 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 20 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 C -0.18 -4.00 9.99 -39.42 -0.39 -4.39 16 25 C -0.07 -1.34 8.69 -39.41 -0.34 -1.69 16 26 C -0.11 -0.89 5.26 -26.65 -0.14 -1.03 16 27 C 0.06 0.43 5.30 -3.83 -0.02 0.41 16 28 H 0.22 0.93 7.80 -54.10 -0.42 0.51 16 29 H 0.06 0.32 8.12 -51.93 -0.42 -0.11 16 30 H 0.10 0.54 7.99 -51.93 -0.41 0.13 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.51 8.02 -51.93 -0.42 0.09 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.96 8.04 -51.93 -0.42 0.55 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 3.88 8.45 -40.82 -0.35 3.53 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 38 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 41 H 0.13 2.50 6.23 -52.49 -0.33 2.17 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.50 7.78 -51.93 -0.40 0.10 16 44 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.63 7.11 -51.93 -0.37 0.26 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -33.99 376.13 -8.50 -42.49 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.20 Total: 6.53 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.63 Total: -16.88 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.40 Total: -38.96 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.07 Total: -14.38 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.99 -8.50 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067131528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.833 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds