Wall clock time and date at job start Tue Mar 31 2020 16:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17389 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47019 * 233.06303 * 3 2 1 5 5 C 1.46850 * 110.99986 * 170.00319 * 4 3 2 6 6 C 1.53037 * 109.52268 * 185.83513 * 5 4 3 7 7 C 1.53122 * 109.27831 * 300.82093 * 6 5 4 8 8 C 1.50698 * 109.52173 * 177.56122 * 7 6 5 9 9 O 1.21287 * 119.99921 * 0.12392 * 8 7 6 10 10 N 1.34775 * 120.00042 * 180.12398 * 8 7 6 11 11 C 1.39929 * 120.00075 * 174.77754 * 10 8 7 12 12 C 1.38965 * 120.03398 * 326.32814 * 11 10 8 13 13 C 1.38155 * 120.06365 * 180.02562 * 12 11 10 14 14 C 1.38171 * 120.13916 * 359.70465 * 13 12 11 15 15 C 1.38911 * 120.07034 * 0.54581 * 14 13 12 16 16 O 1.35750 * 120.03135 * 179.75059 * 15 14 13 17 17 C 1.34831 * 116.99954 * 173.82882 * 16 15 14 18 18 H 1.08008 * 119.99417 * 354.58995 * 17 16 15 19 19 C 1.38645 * 120.00377 * 174.59101 * 17 16 15 20 20 N 1.31566 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00296 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47057 * 90.00100 * 21 19 17 23 23 H 1.48503 * 109.47438 * 210.00143 * 21 19 17 24 24 H 1.48501 * 109.47289 * 330.00489 * 21 19 17 25 25 C 1.38710 * 120.03541 * 146.34700 * 11 10 8 26 26 C 1.53117 * 109.21602 * 57.62096 * 7 6 5 27 27 C 1.46855 * 110.99660 * 294.20659 * 4 3 2 28 28 H 4.40886 * 5.52217 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46757 * 113.06060 * 3 2 1 30 30 H 1.09000 * 109.47259 * 353.06048 * 3 2 1 31 31 H 1.08998 * 109.46173 * 65.82198 * 5 4 3 32 32 H 1.08994 * 109.45074 * 305.84428 * 5 4 3 33 33 H 1.08997 * 109.50021 * 180.87703 * 6 5 4 34 34 H 1.08996 * 109.50118 * 60.76221 * 6 5 4 35 35 H 1.09003 * 109.51816 * 297.68432 * 7 6 5 36 36 H 0.96999 * 119.99861 * 354.77740 * 10 8 7 37 37 H 1.07994 * 119.96862 * 0.02562 * 12 11 10 38 38 H 1.08005 * 119.93114 * 179.97438 * 13 12 11 39 39 H 1.08003 * 119.96556 * 180.30207 * 14 13 12 40 40 H 0.96991 * 120.00018 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.07093 * 0.02562 * 25 11 10 42 42 H 1.09002 * 109.50218 * 62.31656 * 26 7 6 43 43 H 1.08990 * 109.50465 * 182.43315 * 26 7 6 44 44 H 1.08994 * 109.46147 * 294.17786 * 27 4 3 45 45 H 1.09003 * 109.46113 * 54.15852 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1352 0.8332 1.1070 5 6 4.5837 0.6713 1.2869 6 6 5.0328 1.4364 2.5339 7 6 4.6821 2.9180 2.3716 8 6 5.0678 3.6666 3.6214 9 8 5.5756 3.0749 4.5504 10 7 4.8485 4.9937 3.7067 11 6 5.1046 5.6695 4.9049 12 6 4.9001 5.0300 6.1216 13 6 5.1523 5.6969 7.3050 14 6 5.6142 6.9989 7.2828 15 6 5.8157 7.6453 6.0699 16 8 6.2648 8.9262 6.0491 17 6 6.5608 9.4516 4.8432 18 1 6.5208 8.8317 3.9596 19 6 6.9167 10.7874 4.7373 20 7 6.9659 11.5423 5.8137 21 14 7.3275 11.5150 3.0666 22 1 6.0913 12.0518 2.4430 23 1 8.3143 12.6121 3.2336 24 1 7.9035 10.4596 2.1951 25 6 5.5626 6.9786 4.8795 26 6 3.1755 3.0565 2.1365 27 6 2.7800 2.2433 0.9019 28 1 -1.0502 0.0000 -0.0003 29 1 3.0091 0.4034 -0.9456 30 1 3.0098 -1.0193 0.1242 31 1 5.1042 1.0634 0.4132 32 1 4.8187 -0.3864 1.4054 33 1 6.1103 1.3288 2.6583 34 1 4.5229 1.0356 3.4100 35 1 5.2231 3.3290 1.5192 36 1 4.5131 5.4803 2.9376 37 1 4.5436 4.0108 6.1421 38 1 4.9921 5.1979 8.2494 39 1 5.8151 7.5159 8.2095 40 1 7.2152 12.4767 5.7397 41 1 5.7217 7.4780 3.9352 42 1 2.6355 2.6820 3.0062 43 1 2.9270 4.1057 1.9773 44 1 3.3090 2.6279 0.0300 45 1 1.7052 2.3273 0.7408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067201461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:15 Heat of formation + Delta-G solvation = 22.424960 kcal Electronic energy + Delta-G solvation = -26780.314387 eV Core-core repulsion = 22958.026513 eV Total energy + Delta-G solvation = -3822.287874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.61368 -39.24164 -38.43450 -36.46286 -34.84173 -34.24481 -32.52072 -32.21900 -31.14537 -29.43356 -28.68776 -27.50077 -25.33874 -24.28079 -23.51477 -22.00442 -21.80525 -20.39990 -19.70643 -18.49614 -17.97888 -17.82246 -16.89783 -16.30628 -15.68687 -15.53668 -15.29720 -15.08962 -14.97316 -14.37454 -14.22415 -14.11620 -13.92274 -13.57411 -13.47210 -13.24670 -13.09024 -12.96231 -12.43197 -12.29976 -11.78070 -11.72767 -11.59543 -11.46753 -11.13670 -11.08554 -10.99658 -10.85417 -10.75080 -10.69696 -10.48109 -10.44990 -9.87411 -9.55075 -9.39405 -8.81280 -8.77940 -7.73240 -7.15850 -6.45877 -4.05605 1.95914 2.34176 2.37219 2.51208 2.85611 3.10642 3.11040 3.15926 3.23905 3.63239 3.94691 4.02514 4.33770 4.44805 4.58023 4.59508 4.82265 4.88004 4.94267 5.01886 5.09563 5.10352 5.19202 5.23833 5.27370 5.37241 5.49278 5.55714 5.63448 5.70026 5.76449 5.89118 5.98980 6.06461 6.11668 6.25275 6.28335 6.57487 6.63560 6.64981 6.97042 6.99241 7.11691 7.28541 7.30997 7.41554 7.69855 7.81241 7.98403 8.31975 8.99483 9.70195 10.72212 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002421 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.822935 B =11561.829689 C =12554.850121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.162 3.838 4 N -0.537 5.537 5 C 0.057 3.943 6 C -0.096 4.096 7 C -0.108 4.108 8 C 0.516 3.484 9 O -0.518 6.518 10 N -0.669 5.669 11 C 0.180 3.820 12 C -0.205 4.205 13 C -0.063 4.063 14 C -0.200 4.200 15 C 0.168 3.832 16 O -0.176 6.176 17 C -0.391 4.391 18 H 0.089 0.911 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.257 4.257 26 C -0.108 4.108 27 C 0.058 3.942 28 H 0.217 0.783 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.405 0.595 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 -19.880 -13.222 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.036 3.964 4 N -0.262 5.262 5 C -0.070 4.070 6 C -0.134 4.134 7 C -0.129 4.129 8 C 0.303 3.697 9 O -0.392 6.392 10 N -0.314 5.314 11 C 0.087 3.913 12 C -0.226 4.226 13 C -0.082 4.082 14 C -0.220 4.220 15 C 0.114 3.886 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.193 1.193 25 C -0.278 4.278 26 C -0.146 4.146 27 C -0.070 4.070 28 H 0.234 0.766 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.240 0.760 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.147 0.853 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.530 -20.086 -11.917 24.864 hybrid contribution 0.212 0.993 -2.091 2.325 sum -8.318 -19.093 -14.008 25.099 Atomic orbital electron populations 1.24925 0.95934 1.00366 1.00217 1.22810 0.94179 1.00696 1.00526 1.18983 0.85261 0.99074 0.93087 1.61894 1.14435 1.07921 1.41925 1.22149 0.86188 1.01150 0.97560 1.21405 1.01927 0.91830 0.98215 1.21409 0.98005 0.97141 0.96361 1.20623 0.77954 0.81834 0.89332 1.90720 1.41353 1.67608 1.39553 1.43543 1.65390 1.08533 1.13902 1.17418 0.97524 0.91419 0.84905 1.20530 1.10451 1.00765 0.90813 1.20535 0.97239 0.93375 0.97074 1.20252 1.10160 0.95472 0.96131 1.19089 0.91044 0.85907 0.92609 1.84020 1.70985 1.20619 1.32349 1.21258 1.47189 0.94352 0.83968 0.89312 1.25275 0.96872 0.95081 0.99291 1.70036 1.44378 1.07182 1.28096 0.85732 0.78555 0.78986 0.80255 1.19914 1.20235 1.19294 1.20816 1.12322 0.95336 0.99348 1.21593 0.93606 1.00177 0.99225 1.22108 1.01283 0.87017 0.96599 0.76613 0.92416 0.88365 0.94400 0.89965 0.90342 0.89914 0.88689 0.75970 0.86385 0.86622 0.86388 0.92022 0.85313 0.90166 0.90613 0.94366 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.18 -1.53 12.34 -37.12 -0.46 -1.99 16 3 C 0.16 1.13 5.46 -6.61 -0.04 1.09 16 4 N -0.54 -4.39 4.64 -238.17 -1.10 -5.49 16 5 C 0.06 0.42 5.46 -3.83 -0.02 0.40 16 6 C -0.10 -0.92 4.68 -26.65 -0.12 -1.04 16 7 C -0.11 -1.06 2.59 -91.65 -0.24 -1.30 16 8 C 0.52 7.36 6.89 -10.99 -0.08 7.29 16 9 O -0.52 -9.32 13.68 5.55 0.08 -9.24 16 10 N -0.67 -9.90 5.21 -9.88 -0.05 -9.96 16 11 C 0.18 3.44 6.27 -83.72 -0.52 2.92 16 12 C -0.20 -3.96 8.65 -39.34 -0.34 -4.30 16 13 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 14 C -0.20 -4.33 9.99 -39.36 -0.39 -4.73 16 15 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 16 O -0.18 -5.01 9.76 0.04 0.00 -5.01 16 17 C -0.39 -10.81 9.44 30.88 0.29 -10.52 16 18 H 0.09 2.26 5.30 -52.48 -0.28 1.98 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 21 Si 0.94 20.23 29.55 -169.99 -5.02 15.20 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.26 -5.55 9.04 -39.21 -0.35 -5.90 16 26 C -0.11 -0.94 5.27 -26.65 -0.14 -1.08 16 27 C 0.06 0.46 5.30 -3.83 -0.02 0.44 16 28 H 0.22 0.95 7.80 -54.08 -0.42 0.52 16 29 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.10 0.56 7.99 -51.93 -0.41 0.14 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.52 8.01 -51.93 -0.42 0.10 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.41 4.73 8.46 -40.82 -0.35 4.38 16 37 H 0.12 2.23 6.43 -52.49 -0.34 1.89 16 38 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.13 2.72 5.72 -52.48 -0.30 2.42 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.58 7.79 -51.93 -0.40 0.17 16 44 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.66 7.11 -51.93 -0.37 0.29 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -33.61 376.55 -8.51 -42.12 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.22 Total: 7.53 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.62 Total: -16.46 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: -0.40 Total: -39.81 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.26 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.61 -8.51 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067201461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.549 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds