Wall clock time and date at job start Tue Mar 31 2020 16:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17389 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47019 * 233.06303 * 3 2 1 5 5 C 1.46850 * 110.99986 * 170.00319 * 4 3 2 6 6 C 1.53037 * 109.52268 * 185.83513 * 5 4 3 7 7 C 1.53122 * 109.27831 * 300.82093 * 6 5 4 8 8 C 1.50698 * 109.52173 * 177.56122 * 7 6 5 9 9 O 1.21287 * 119.99921 * 0.12392 * 8 7 6 10 10 N 1.34775 * 120.00042 * 180.12398 * 8 7 6 11 11 C 1.39929 * 120.00075 * 174.77754 * 10 8 7 12 12 C 1.38965 * 120.03398 * 326.32814 * 11 10 8 13 13 C 1.38155 * 120.06365 * 180.02562 * 12 11 10 14 14 C 1.38171 * 120.13916 * 359.70465 * 13 12 11 15 15 C 1.38911 * 120.07034 * 0.54581 * 14 13 12 16 16 O 1.35750 * 120.03135 * 179.75059 * 15 14 13 17 17 C 1.34831 * 116.99954 * 173.82882 * 16 15 14 18 18 H 1.08008 * 119.99417 * 354.58995 * 17 16 15 19 19 C 1.38645 * 120.00377 * 174.59101 * 17 16 15 20 20 N 1.31566 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00296 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47057 * 90.00100 * 21 19 17 23 23 H 1.48503 * 109.47438 * 210.00143 * 21 19 17 24 24 H 1.48501 * 109.47289 * 330.00489 * 21 19 17 25 25 C 1.38710 * 120.03541 * 146.34700 * 11 10 8 26 26 C 1.53117 * 109.21602 * 57.62096 * 7 6 5 27 27 C 1.46855 * 110.99660 * 294.20659 * 4 3 2 28 28 H 4.40886 * 5.52217 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46757 * 113.06060 * 3 2 1 30 30 H 1.09000 * 109.47259 * 353.06048 * 3 2 1 31 31 H 1.08998 * 109.46173 * 65.82198 * 5 4 3 32 32 H 1.08994 * 109.45074 * 305.84428 * 5 4 3 33 33 H 1.08997 * 109.50021 * 180.87703 * 6 5 4 34 34 H 1.08996 * 109.50118 * 60.76221 * 6 5 4 35 35 H 1.09003 * 109.51816 * 297.68432 * 7 6 5 36 36 H 0.96999 * 119.99861 * 354.77740 * 10 8 7 37 37 H 1.07994 * 119.96862 * 0.02562 * 12 11 10 38 38 H 1.08005 * 119.93114 * 179.97438 * 13 12 11 39 39 H 1.08003 * 119.96556 * 180.30207 * 14 13 12 40 40 H 0.96991 * 120.00018 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.07093 * 0.02562 * 25 11 10 42 42 H 1.09002 * 109.50218 * 62.31656 * 26 7 6 43 43 H 1.08990 * 109.50465 * 182.43315 * 26 7 6 44 44 H 1.08994 * 109.46147 * 294.17786 * 27 4 3 45 45 H 1.09003 * 109.46113 * 54.15852 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1352 0.8332 1.1070 5 6 4.5837 0.6713 1.2869 6 6 5.0328 1.4364 2.5339 7 6 4.6821 2.9180 2.3716 8 6 5.0678 3.6666 3.6214 9 8 5.5756 3.0749 4.5504 10 7 4.8485 4.9937 3.7067 11 6 5.1046 5.6695 4.9049 12 6 4.9001 5.0300 6.1216 13 6 5.1523 5.6969 7.3050 14 6 5.6142 6.9989 7.2828 15 6 5.8157 7.6453 6.0699 16 8 6.2648 8.9262 6.0491 17 6 6.5608 9.4516 4.8432 18 1 6.5208 8.8317 3.9596 19 6 6.9167 10.7874 4.7373 20 7 6.9659 11.5423 5.8137 21 14 7.3275 11.5150 3.0666 22 1 6.0913 12.0518 2.4430 23 1 8.3143 12.6121 3.2336 24 1 7.9035 10.4596 2.1951 25 6 5.5626 6.9786 4.8795 26 6 3.1755 3.0565 2.1365 27 6 2.7800 2.2433 0.9019 28 1 -1.0502 0.0000 -0.0003 29 1 3.0091 0.4034 -0.9456 30 1 3.0098 -1.0193 0.1242 31 1 5.1042 1.0634 0.4132 32 1 4.8187 -0.3864 1.4054 33 1 6.1103 1.3288 2.6583 34 1 4.5229 1.0356 3.4100 35 1 5.2231 3.3290 1.5192 36 1 4.5131 5.4803 2.9376 37 1 4.5436 4.0108 6.1421 38 1 4.9921 5.1979 8.2494 39 1 5.8151 7.5159 8.2095 40 1 7.2152 12.4767 5.7397 41 1 5.7217 7.4780 3.9352 42 1 2.6355 2.6820 3.0062 43 1 2.9270 4.1057 1.9773 44 1 3.3090 2.6279 0.0300 45 1 1.7052 2.3273 0.7408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067201461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:13 Heat of formation + Delta-G solvation = 0.408755 kcal Electronic energy + Delta-G solvation = -26781.269081 eV Core-core repulsion = 22958.026513 eV Total energy + Delta-G solvation = -3823.242568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80462 -40.60731 -39.59912 -38.10666 -35.73042 -35.49664 -34.23144 -33.15119 -31.81457 -30.99714 -30.28199 -28.28382 -27.28667 -25.17806 -24.17994 -23.52244 -23.23379 -21.56944 -20.70248 -19.75503 -19.31927 -19.00547 -18.22490 -17.25099 -16.95500 -16.80546 -16.49729 -16.15229 -15.94827 -15.75113 -15.61849 -15.55789 -15.17127 -14.71949 -14.61860 -14.33271 -14.16191 -13.92796 -13.71318 -13.54374 -13.24974 -13.01225 -12.79029 -12.69021 -12.48517 -12.38008 -12.17396 -12.10950 -11.80732 -11.55372 -11.47399 -11.30346 -11.22857 -11.03112 -10.81149 -10.66014 -9.36553 -9.31580 -8.88204 -8.46290 -6.15199 0.38597 0.68330 1.36138 1.44944 1.53684 1.60845 1.78117 1.95768 2.03077 2.18315 2.83200 3.08129 3.16579 3.46921 3.49770 3.53562 3.74166 3.80199 4.09726 4.19798 4.20678 4.32037 4.36446 4.39761 4.44172 4.52312 4.57825 4.62378 4.67644 4.73132 4.74312 4.88750 4.93332 5.00834 5.07321 5.10690 5.13849 5.17490 5.34565 5.39106 5.47925 5.65823 5.66339 6.01519 6.03004 6.09568 6.16144 6.45736 6.74566 6.97871 7.11808 7.77375 8.76692 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002421 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.822935 B =11561.829689 C =12554.850121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.210 4.210 3 C 0.162 3.838 4 N -0.553 5.553 5 C 0.063 3.937 6 C -0.094 4.094 7 C -0.096 4.096 8 C 0.515 3.485 9 O -0.556 6.556 10 N -0.662 5.662 11 C 0.188 3.812 12 C -0.200 4.200 13 C -0.052 4.052 14 C -0.215 4.215 15 C 0.134 3.866 16 O -0.226 6.226 17 C -0.412 4.412 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.019 2.981 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.252 1.252 25 C -0.260 4.260 26 C -0.103 4.103 27 C 0.062 3.938 28 H 0.239 0.761 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.422 0.578 37 H 0.128 0.872 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.273 0.727 41 H 0.130 0.870 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.479 -21.790 -16.017 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.211 4.211 3 C 0.036 3.964 4 N -0.279 5.279 5 C -0.064 4.064 6 C -0.132 4.132 7 C -0.117 4.117 8 C 0.305 3.695 9 O -0.433 6.433 10 N -0.307 5.307 11 C 0.093 3.907 12 C -0.221 4.221 13 C -0.071 4.071 14 C -0.234 4.234 15 C 0.082 3.918 16 O -0.132 6.132 17 C -0.488 4.488 18 H 0.119 0.881 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.176 1.176 25 C -0.282 4.282 26 C -0.141 4.141 27 C -0.066 4.066 28 H 0.256 0.744 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.260 0.740 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.148 0.852 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.247 -22.055 -14.743 28.094 hybrid contribution 0.303 1.284 -1.127 1.735 sum -8.944 -20.771 -15.870 27.628 Atomic orbital electron populations 1.25658 0.96899 0.99738 0.99562 1.23364 0.95144 1.01368 1.01205 1.19074 0.84598 0.99535 0.93208 1.61847 1.14874 1.08172 1.42962 1.22097 0.85950 1.01549 0.96787 1.21369 1.01414 0.91791 0.98625 1.21437 0.99063 0.96654 0.94537 1.21472 0.76544 0.81231 0.90260 1.90703 1.43001 1.68209 1.41347 1.43563 1.65122 1.08923 1.13128 1.17463 0.95885 0.90617 0.86714 1.20832 1.09208 1.01037 0.91040 1.20915 0.95231 0.92151 0.98786 1.20474 1.10857 0.96577 0.95536 1.19615 0.92249 0.85291 0.94604 1.83987 1.73422 1.22688 1.33126 1.21783 1.47553 0.95113 0.84370 0.88055 1.26602 0.96391 0.95175 1.03882 1.70188 1.46808 1.07707 1.31023 0.84582 0.78704 0.78184 0.74715 1.18571 1.19872 1.17605 1.20852 1.12475 0.96283 0.98545 1.21569 0.92261 1.01218 0.99068 1.22055 1.01233 0.86935 0.96382 0.74447 0.91075 0.87291 0.92735 0.88871 0.90811 0.92215 0.86061 0.73973 0.85416 0.82964 0.86306 0.91836 0.85202 0.92076 0.89245 0.92852 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.68 19.25 74.32 1.43 -1.25 16 2 C -0.21 -3.16 12.34 31.13 0.38 -2.78 16 3 C 0.16 1.85 5.46 84.50 0.46 2.31 16 4 N -0.55 -7.67 4.64 -907.42 -4.21 -11.88 16 5 C 0.06 0.75 5.46 86.33 0.47 1.23 16 6 C -0.09 -1.62 4.68 30.65 0.14 -1.47 16 7 C -0.10 -1.64 2.59 -11.46 -0.03 -1.67 16 8 C 0.52 13.74 6.89 87.66 0.60 14.34 16 9 O -0.56 -19.32 13.68 -3.05 -0.04 -19.36 16 10 N -0.66 -18.27 5.21 -303.56 -1.58 -19.86 16 11 C 0.19 6.95 6.27 38.14 0.24 7.19 16 12 C -0.20 -7.44 8.65 22.42 0.19 -7.24 16 13 C -0.05 -1.93 10.03 22.23 0.22 -1.70 16 14 C -0.21 -9.41 9.99 22.42 0.22 -9.19 16 15 C 0.13 6.70 6.64 22.56 0.15 6.85 16 16 O -0.23 -13.48 9.76 -22.76 -0.22 -13.70 16 17 C -0.41 -23.52 9.44 67.92 0.64 -22.88 16 18 H 0.10 5.25 5.30 -2.91 -0.02 5.23 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 20 N -0.92 -55.81 13.67 21.61 0.30 -55.51 16 21 Si 1.02 41.71 29.55 68.60 2.03 43.74 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 25 C -0.26 -11.28 9.04 22.51 0.20 -11.07 16 26 C -0.10 -1.55 5.27 30.65 0.16 -1.39 16 27 C 0.06 0.80 5.30 86.33 0.46 1.26 16 28 H 0.24 1.60 7.80 -4.41 -0.03 1.57 16 29 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.11 0.97 7.99 -2.39 -0.02 0.95 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.92 8.01 -2.39 -0.02 0.90 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.31 8.04 -2.39 -0.02 1.29 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.42 8.78 8.46 -92.71 -0.78 7.99 16 37 H 0.13 4.58 6.43 -2.91 -0.02 4.56 16 38 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 40 H 0.27 15.16 8.31 -92.72 -0.77 14.39 16 41 H 0.13 5.50 5.72 -2.91 -0.02 5.48 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 1.09 7.79 -2.39 -0.02 1.07 16 44 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.08 1.08 7.11 -2.39 -0.02 1.06 16 Total: -1.00 -76.57 376.55 2.92 -73.66 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.22 Total: 31.18 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 6.43 Total: -28.26 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -5.49 Total: -87.25 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.26 Total: -33.06 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -76.57 2.92 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067201461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.064 kcal (2) G-P(sol) polarization free energy of solvation -76.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds