Wall clock time and date at job start Tue Mar 31 2020 16:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46902 * 109.47117 * 197.37290 * 3 2 1 5 5 C 1.46902 * 111.00175 * 169.99772 * 4 3 2 6 6 C 1.53239 * 109.33971 * 187.25489 * 5 4 3 7 7 N 1.47085 * 108.52152 * 306.17146 * 6 5 4 8 8 C 1.34773 * 120.88042 * 231.16518 * 7 6 5 9 9 O 1.21284 * 119.99907 * 180.02562 * 8 7 6 10 10 C 1.50695 * 119.99955 * 0.02562 * 8 7 6 11 11 C 1.50707 * 109.47045 * 180.02562 * 10 8 7 12 12 C 1.38325 * 119.96322 * 90.00314 * 11 10 8 13 13 C 1.38275 * 120.14040 * 180.02562 * 12 11 10 14 14 C 1.38126 * 120.06542 * 359.97438 * 13 12 11 15 15 C 1.38851 * 119.93209 * 0.02562 * 14 13 12 16 16 O 1.35754 * 120.06886 * 179.97438 * 15 14 13 17 17 C 1.34830 * 117.00075 * 354.46952 * 16 15 14 18 18 H 1.07995 * 119.99843 * 5.05606 * 17 16 15 19 19 C 1.38654 * 119.99996 * 185.05318 * 17 16 15 20 20 N 1.31561 * 119.99905 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99898 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47028 * 60.00374 * 21 19 17 23 23 H 1.48495 * 109.47128 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47089 * 300.00306 * 21 19 17 25 25 C 1.38067 * 119.96613 * 269.73351 * 11 10 8 26 26 C 1.47086 * 118.23600 * 51.18656 * 7 6 5 27 27 C 1.46893 * 111.00112 * 294.30418 * 4 3 2 28 28 H 4.40884 * 5.52161 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47681 * 77.37583 * 3 2 1 30 30 H 1.09005 * 109.47399 * 317.37154 * 3 2 1 31 31 H 1.09001 * 109.49025 * 307.21613 * 5 4 3 32 32 H 1.09002 * 109.48786 * 67.29774 * 5 4 3 33 33 H 1.09000 * 109.62735 * 65.87800 * 6 5 4 34 34 H 1.08993 * 109.63043 * 186.46367 * 6 5 4 35 35 H 1.08999 * 109.47346 * 300.00068 * 10 8 7 36 36 H 1.08996 * 109.46960 * 60.00977 * 10 8 7 37 37 H 1.08003 * 119.93245 * 0.02562 * 12 11 10 38 38 H 1.07994 * 119.96686 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.03144 * 180.02562 * 14 13 12 40 40 H 0.96999 * 119.99937 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.04061 * 359.97438 * 25 11 10 42 42 H 1.08999 * 109.62762 * 189.10573 * 26 7 6 43 43 H 1.08997 * 109.63111 * 68.52084 * 26 7 6 44 44 H 1.08999 * 109.49390 * 292.70574 * 27 4 3 45 45 H 1.09000 * 109.49509 * 52.78386 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 1.3227 0.4135 5 6 4.5839 1.2963 0.6547 6 6 5.0229 2.6362 1.2549 7 7 4.5588 3.7178 0.3728 8 6 5.4084 4.6707 -0.0591 9 8 5.0084 5.5556 -0.7857 10 6 6.8552 4.6368 0.3609 11 6 7.5840 5.8044 -0.2530 12 6 7.6553 7.0080 0.4250 13 6 8.3226 8.0819 -0.1350 14 6 8.9206 7.9554 -1.3737 15 6 8.8508 6.7485 -2.0567 16 8 9.4371 6.6213 -3.2745 17 6 9.9718 7.7344 -3.8158 18 1 9.9946 8.6532 -3.2487 19 6 10.4924 7.6994 -5.1004 20 7 10.4642 6.5802 -5.7913 21 14 11.2326 9.2417 -5.8505 22 1 12.3706 9.7016 -5.0146 23 1 11.7149 8.9424 -7.2226 24 1 10.2002 10.3074 -5.9106 25 6 8.1845 5.6700 -1.4889 26 6 3.1429 3.7320 -0.0251 27 6 2.7779 2.3490 -0.5749 28 1 -1.0502 -0.0003 -0.0003 29 1 3.0095 -0.2238 -1.0028 30 1 3.0097 -0.7553 0.6960 31 1 4.8223 0.4909 1.3494 32 1 5.1064 1.1312 -0.2876 33 1 4.5820 2.7561 2.2444 34 1 6.1099 2.6654 1.3293 35 1 6.9199 4.6991 1.4472 36 1 7.3100 3.7058 0.0225 37 1 7.1889 7.1093 1.3938 38 1 8.3769 9.0202 0.3969 39 1 9.4420 8.7944 -1.8104 40 1 10.8288 6.5556 -6.6898 41 1 8.1326 4.7286 -2.0157 42 1 2.9870 4.4857 -0.7969 43 1 2.5213 3.9572 0.8414 44 1 3.3255 2.1692 -1.5000 45 1 1.7067 2.3071 -0.7719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089783886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:55 Heat of formation + Delta-G solvation = 37.222834 kcal Electronic energy + Delta-G solvation = -26783.382133 eV Core-core repulsion = 22961.735943 eV Total energy + Delta-G solvation = -3821.646190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.37726 -39.02791 -38.25059 -36.42366 -35.28305 -32.99403 -32.46947 -32.12346 -31.23489 -29.24731 -28.83299 -27.04214 -25.28295 -24.96357 -23.96653 -21.89503 -21.48850 -20.66363 -19.05167 -18.53736 -17.57140 -17.26237 -16.90394 -15.98652 -15.69722 -15.63928 -15.36535 -15.26286 -14.98072 -14.54303 -14.34507 -13.89365 -13.83194 -13.55869 -13.51184 -13.28087 -12.86540 -12.62584 -12.41738 -12.32270 -11.86885 -11.75010 -11.59644 -11.55603 -11.46503 -11.20963 -10.78826 -10.76198 -10.71445 -10.56815 -10.53200 -10.41243 -9.66640 -9.28511 -9.04605 -8.77965 -8.60132 -8.00719 -7.15852 -6.38848 -3.97787 2.13741 2.31474 2.45090 2.50905 2.76238 2.94727 3.16511 3.18755 3.20675 3.61018 4.01508 4.02738 4.39405 4.55135 4.65690 4.70487 4.85984 4.89239 4.99610 5.01621 5.09795 5.11168 5.18652 5.21739 5.30110 5.37320 5.49546 5.51861 5.59641 5.62370 5.70398 5.78257 5.80091 5.98798 6.22913 6.34310 6.39437 6.47238 6.56551 6.71715 6.97391 7.12718 7.27830 7.32246 7.34487 7.42844 7.49781 7.88681 8.06294 8.28931 9.06918 9.78024 10.79473 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.002293 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.885570 B =12206.618578 C =13012.845377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.181 4.181 3 C 0.162 3.838 4 N -0.536 5.536 5 C 0.039 3.961 6 C 0.113 3.887 7 N -0.624 5.624 8 C 0.517 3.483 9 O -0.517 6.517 10 C -0.092 4.092 11 C -0.033 4.033 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.154 3.846 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.174 4.174 26 C 0.119 3.881 27 C 0.041 3.959 28 H 0.217 0.783 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.269 0.731 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.894 -12.653 15.311 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.090 4.090 6 C -0.010 4.010 7 N -0.361 5.361 8 C 0.306 3.694 9 O -0.391 6.391 10 C -0.132 4.132 11 C -0.034 4.034 12 C -0.215 4.215 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.101 3.899 16 O -0.084 6.084 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.501 5.501 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.194 4.194 26 C -0.004 4.004 27 C -0.088 4.088 28 H 0.234 0.766 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.183 -12.294 14.941 23.991 hybrid contribution 0.453 0.480 -1.087 1.272 sum -13.731 -11.814 13.854 22.804 Atomic orbital electron populations 1.24923 0.95920 0.99369 1.01155 1.22779 0.94138 1.01023 1.00242 1.18999 0.85299 0.91647 1.00494 1.61915 1.13934 1.04390 1.45827 1.22539 0.87043 0.98494 1.00891 1.21819 1.00318 0.85126 0.93778 1.48229 1.09658 1.27586 1.50587 1.20789 0.87885 0.80886 0.79885 1.90756 1.78019 1.34947 1.35376 1.20616 0.91312 0.99374 1.01861 1.18666 0.96969 0.93628 0.94108 1.20344 1.06757 0.93616 1.00799 1.20678 0.96449 0.97369 0.94785 1.21171 1.07852 0.98917 0.97077 1.19272 0.90833 0.92951 0.86830 1.83973 1.62900 1.35268 1.26241 1.21264 1.38174 0.88629 0.98592 0.89185 1.25273 0.97368 0.98697 0.95236 1.70034 1.43006 1.25789 1.11235 0.85790 0.79270 0.80076 0.78338 1.19542 1.20335 1.19533 1.19925 1.04550 0.98542 0.96353 1.21609 0.81371 0.96445 1.01004 1.22548 1.01588 0.91567 0.93083 0.76590 0.92237 0.88258 0.89082 0.93630 0.90469 0.88798 0.88381 0.88389 0.87948 0.87472 0.85629 0.92083 0.86941 0.88487 0.90995 0.93872 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 19.25 29.55 0.57 -0.90 16 2 C -0.18 -1.54 12.32 -37.12 -0.46 -2.00 16 3 C 0.16 1.16 5.46 -6.61 -0.04 1.13 16 4 N -0.54 -4.40 4.61 -237.83 -1.10 -5.50 16 5 C 0.04 0.27 5.62 -3.70 -0.02 0.25 16 6 C 0.11 0.87 6.50 -3.60 -0.02 0.84 16 7 N -0.62 -7.15 3.01 -172.46 -0.52 -7.67 16 8 C 0.52 7.81 7.70 -10.99 -0.08 7.73 16 9 O -0.52 -10.39 15.49 5.55 0.09 -10.30 16 10 C -0.09 -1.24 4.20 -29.03 -0.12 -1.37 16 11 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 12 C -0.20 -3.61 9.70 -39.54 -0.38 -4.00 16 13 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 14 C -0.23 -5.29 9.17 -39.40 -0.36 -5.65 16 15 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 16 O -0.18 -5.32 9.76 0.04 0.00 -5.32 16 17 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.87 -25.98 13.67 55.48 0.76 -25.22 16 21 Si 0.94 21.08 29.55 -169.99 -5.02 16.05 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.17 -3.88 9.64 -39.40 -0.38 -4.26 16 26 C 0.12 1.30 6.60 -3.60 -0.02 1.27 16 27 C 0.04 0.39 5.46 -3.70 -0.02 0.36 16 28 H 0.22 0.93 7.80 -54.08 -0.42 0.50 16 29 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.10 0.54 7.97 -51.93 -0.41 0.12 16 31 H 0.09 0.43 7.99 -51.93 -0.41 0.01 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.58 6.02 -51.93 -0.31 0.27 16 35 H 0.10 1.02 7.94 -51.93 -0.41 0.61 16 36 H 0.10 1.12 7.60 -51.93 -0.39 0.73 16 37 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 2.85 5.64 -52.48 -0.30 2.56 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 41 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 42 H 0.10 1.24 7.06 -51.93 -0.37 0.88 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.79 7.07 -51.93 -0.37 0.43 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -35.95 378.54 -8.54 -44.49 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.19 Total: 3.61 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.26 Total: -15.84 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.86 Total: -38.39 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.95 -8.54 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089783886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.711 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds