Wall clock time and date at job start Tue Mar 31 2020 16:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46902 * 109.47117 * 197.37290 * 3 2 1 5 5 C 1.46902 * 111.00175 * 169.99772 * 4 3 2 6 6 C 1.53239 * 109.33971 * 187.25489 * 5 4 3 7 7 N 1.47085 * 108.52152 * 306.17146 * 6 5 4 8 8 C 1.34773 * 120.88042 * 231.16518 * 7 6 5 9 9 O 1.21284 * 119.99907 * 180.02562 * 8 7 6 10 10 C 1.50695 * 119.99955 * 0.02562 * 8 7 6 11 11 C 1.50707 * 109.47045 * 180.02562 * 10 8 7 12 12 C 1.38325 * 119.96322 * 90.00314 * 11 10 8 13 13 C 1.38275 * 120.14040 * 180.02562 * 12 11 10 14 14 C 1.38126 * 120.06542 * 359.97438 * 13 12 11 15 15 C 1.38851 * 119.93209 * 0.02562 * 14 13 12 16 16 O 1.35754 * 120.06886 * 179.97438 * 15 14 13 17 17 C 1.34830 * 117.00075 * 354.46952 * 16 15 14 18 18 H 1.07995 * 119.99843 * 5.05606 * 17 16 15 19 19 C 1.38654 * 119.99996 * 185.05318 * 17 16 15 20 20 N 1.31561 * 119.99905 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99898 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47028 * 60.00374 * 21 19 17 23 23 H 1.48495 * 109.47128 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47089 * 300.00306 * 21 19 17 25 25 C 1.38067 * 119.96613 * 269.73351 * 11 10 8 26 26 C 1.47086 * 118.23600 * 51.18656 * 7 6 5 27 27 C 1.46893 * 111.00112 * 294.30418 * 4 3 2 28 28 H 4.40884 * 5.52161 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47681 * 77.37583 * 3 2 1 30 30 H 1.09005 * 109.47399 * 317.37154 * 3 2 1 31 31 H 1.09001 * 109.49025 * 307.21613 * 5 4 3 32 32 H 1.09002 * 109.48786 * 67.29774 * 5 4 3 33 33 H 1.09000 * 109.62735 * 65.87800 * 6 5 4 34 34 H 1.08993 * 109.63043 * 186.46367 * 6 5 4 35 35 H 1.08999 * 109.47346 * 300.00068 * 10 8 7 36 36 H 1.08996 * 109.46960 * 60.00977 * 10 8 7 37 37 H 1.08003 * 119.93245 * 0.02562 * 12 11 10 38 38 H 1.07994 * 119.96686 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.03144 * 180.02562 * 14 13 12 40 40 H 0.96999 * 119.99937 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.04061 * 359.97438 * 25 11 10 42 42 H 1.08999 * 109.62762 * 189.10573 * 26 7 6 43 43 H 1.08997 * 109.63111 * 68.52084 * 26 7 6 44 44 H 1.08999 * 109.49390 * 292.70574 * 27 4 3 45 45 H 1.09000 * 109.49509 * 52.78386 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 1.3227 0.4135 5 6 4.5839 1.2963 0.6547 6 6 5.0229 2.6362 1.2549 7 7 4.5588 3.7178 0.3728 8 6 5.4084 4.6707 -0.0591 9 8 5.0084 5.5556 -0.7857 10 6 6.8552 4.6368 0.3609 11 6 7.5840 5.8044 -0.2530 12 6 7.6553 7.0080 0.4250 13 6 8.3226 8.0819 -0.1350 14 6 8.9206 7.9554 -1.3737 15 6 8.8508 6.7485 -2.0567 16 8 9.4371 6.6213 -3.2745 17 6 9.9718 7.7344 -3.8158 18 1 9.9946 8.6532 -3.2487 19 6 10.4924 7.6994 -5.1004 20 7 10.4642 6.5802 -5.7913 21 14 11.2326 9.2417 -5.8505 22 1 12.3706 9.7016 -5.0146 23 1 11.7149 8.9424 -7.2226 24 1 10.2002 10.3074 -5.9106 25 6 8.1845 5.6700 -1.4889 26 6 3.1429 3.7320 -0.0251 27 6 2.7779 2.3490 -0.5749 28 1 -1.0502 -0.0003 -0.0003 29 1 3.0095 -0.2238 -1.0028 30 1 3.0097 -0.7553 0.6960 31 1 4.8223 0.4909 1.3494 32 1 5.1064 1.1312 -0.2876 33 1 4.5820 2.7561 2.2444 34 1 6.1099 2.6654 1.3293 35 1 6.9199 4.6991 1.4472 36 1 7.3100 3.7058 0.0225 37 1 7.1889 7.1093 1.3938 38 1 8.3769 9.0202 0.3969 39 1 9.4420 8.7944 -1.8104 40 1 10.8288 6.5556 -6.6898 41 1 8.1326 4.7286 -2.0157 42 1 2.9870 4.4857 -0.7969 43 1 2.5213 3.9572 0.8414 44 1 3.3255 2.1692 -1.5000 45 1 1.7067 2.3071 -0.7719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089783886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:54 Heat of formation + Delta-G solvation = 12.710279 kcal Electronic energy + Delta-G solvation = -26784.445077 eV Core-core repulsion = 22961.735943 eV Total energy + Delta-G solvation = -3822.709134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.43521 -40.63635 -39.31635 -38.13463 -36.15625 -34.35603 -33.78253 -33.44856 -32.16708 -30.88565 -29.73832 -28.33249 -27.25359 -25.75695 -24.75965 -23.32016 -22.92877 -21.98644 -20.10499 -19.40076 -19.09322 -18.71770 -18.25159 -16.96756 -16.88737 -16.62414 -16.34255 -16.25148 -16.07415 -15.99566 -15.89402 -15.50165 -15.04722 -14.78415 -14.66533 -14.33475 -14.18351 -13.95463 -13.68100 -13.55225 -13.15561 -12.96605 -12.82002 -12.52212 -12.51731 -12.40844 -12.29019 -12.23298 -12.19049 -12.12069 -11.36299 -11.20904 -11.11291 -10.89945 -10.77846 -9.87372 -9.63413 -9.37078 -8.97667 -8.47383 -6.15869 0.51797 0.75874 1.33073 1.44689 1.49879 1.62085 1.71541 1.93159 2.00680 2.17563 2.82927 2.99578 3.14533 3.44077 3.50642 3.64764 3.81830 3.93575 4.00915 4.09444 4.12219 4.24727 4.31162 4.35031 4.41435 4.48734 4.52960 4.58544 4.60076 4.63177 4.72118 4.73592 4.80037 4.83134 5.04917 5.07323 5.12502 5.12658 5.30567 5.47625 5.65086 5.72709 5.75473 5.82198 5.94000 6.02419 6.22597 6.39906 6.71717 6.97063 7.18566 7.78738 8.76036 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.002293 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.885570 B =12206.618578 C =13012.845377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.214 4.214 3 C 0.161 3.839 4 N -0.538 5.538 5 C 0.037 3.963 6 C 0.106 3.894 7 N -0.615 5.615 8 C 0.514 3.486 9 O -0.581 6.581 10 C -0.088 4.088 11 C -0.025 4.025 12 C -0.180 4.180 13 C -0.074 4.074 14 C -0.247 4.247 15 C 0.111 3.889 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.254 1.254 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.192 4.192 26 C 0.118 3.882 27 C 0.050 3.950 28 H 0.241 0.759 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.026 0.974 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 -12.970 18.963 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.214 4.214 3 C 0.035 3.965 4 N -0.262 5.262 5 C -0.090 4.090 6 C -0.016 4.016 7 N -0.349 5.349 8 C 0.304 3.696 9 O -0.461 6.461 10 C -0.127 4.127 11 C -0.026 4.026 12 C -0.199 4.199 13 C -0.091 4.091 14 C -0.266 4.266 15 C 0.061 3.939 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.178 1.178 23 H -0.195 1.195 24 H -0.185 1.185 25 C -0.212 4.212 26 C -0.005 4.005 27 C -0.079 4.079 28 H 0.258 0.742 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.163 0.837 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.044 0.956 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.997 -12.666 18.686 27.102 hybrid contribution 0.455 0.436 -1.900 2.002 sum -14.541 -12.230 16.785 25.353 Atomic orbital electron populations 1.25679 0.96867 0.98412 1.00305 1.23283 0.95049 1.01958 1.01121 1.19100 0.84874 0.91447 1.01069 1.61942 1.14865 1.04525 1.44910 1.22653 0.86019 0.99141 1.01236 1.22202 1.01878 0.83874 0.93633 1.48293 1.09345 1.27389 1.49922 1.21024 0.88676 0.80731 0.79192 1.90744 1.79126 1.37777 1.38404 1.20731 0.89604 0.98116 1.04241 1.19196 0.95175 0.95844 0.92392 1.20975 1.04321 0.92562 1.01998 1.21139 0.95069 0.99545 0.93395 1.21297 1.08834 0.97856 0.98626 1.19884 0.92415 0.95188 0.86428 1.83932 1.65480 1.36149 1.28569 1.21784 1.38643 0.89156 0.99449 0.88257 1.26627 0.97643 1.02649 0.95330 1.70186 1.45362 1.28634 1.11901 0.84637 0.78736 0.75222 0.77529 1.17841 1.19463 1.18465 1.20200 1.05247 0.97686 0.98047 1.21597 0.81503 0.96616 1.00762 1.22373 1.01400 0.91385 0.92711 0.74236 0.92363 0.86148 0.85926 0.94595 0.88635 0.86581 0.83686 0.86040 0.83496 0.83657 0.86430 0.91866 0.87711 0.91180 0.89760 0.95612 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 19.25 74.32 1.43 -1.18 16 2 C -0.21 -3.32 12.32 31.13 0.38 -2.93 16 3 C 0.16 2.01 5.46 84.50 0.46 2.47 16 4 N -0.54 -7.67 4.61 -906.35 -4.18 -11.84 16 5 C 0.04 0.40 5.62 86.38 0.49 0.88 16 6 C 0.11 1.20 6.50 86.35 0.56 1.76 16 7 N -0.62 -12.77 3.01 -817.93 -2.46 -15.23 16 8 C 0.51 14.65 7.70 87.66 0.68 15.32 16 9 O -0.58 -23.50 15.49 -3.04 -0.05 -23.55 16 10 C -0.09 -2.07 4.20 29.10 0.12 -1.95 16 11 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 12 C -0.18 -6.00 9.70 22.30 0.22 -5.79 16 13 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 14 C -0.25 -11.55 9.17 22.39 0.21 -11.35 16 15 C 0.11 5.92 6.65 22.58 0.15 6.07 16 16 O -0.23 -14.88 9.76 -22.78 -0.22 -15.10 16 17 C -0.41 -25.29 9.49 67.92 0.64 -24.64 16 18 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 19 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 20 N -0.92 -58.56 13.67 21.61 0.30 -58.27 16 21 Si 1.02 44.51 29.55 68.60 2.03 46.54 16 22 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.19 -8.82 9.64 22.39 0.22 -8.60 16 26 C 0.12 2.51 6.60 86.35 0.57 3.08 16 27 C 0.05 0.92 5.46 86.38 0.47 1.39 16 28 H 0.24 1.57 7.80 -4.41 -0.03 1.53 16 29 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 30 H 0.12 0.96 7.97 -2.38 -0.02 0.94 16 31 H 0.12 0.59 7.99 -2.39 -0.02 0.57 16 32 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.12 0.82 6.02 -2.39 -0.01 0.81 16 35 H 0.15 2.11 7.94 -2.39 -0.02 2.09 16 36 H 0.12 2.35 7.60 -2.39 -0.02 2.33 16 37 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 38 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.12 5.55 5.64 -2.91 -0.02 5.53 16 40 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 41 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.07 1.88 7.06 -2.39 -0.02 1.86 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 1.58 7.07 -2.39 -0.02 1.56 16 Total: -1.00 -86.72 378.54 3.61 -83.12 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.99 Total: 24.33 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 7.20 Total: -29.99 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -6.34 Total: -85.35 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.27 Total: -38.66 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -86.72 3.61 -83.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089783886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.826 kcal (2) G-P(sol) polarization free energy of solvation -86.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds