Wall clock time and date at job start Tue Mar 31 2020 16:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47006 * 2 1 4 4 N 1.46503 * 109.46939 * 119.99204 * 2 1 3 5 5 C 1.34777 * 119.99545 * 85.00304 * 4 2 1 6 6 O 1.21637 * 120.00112 * 0.02562 * 5 4 2 7 7 C 1.47257 * 120.00261 * 179.97438 * 5 4 2 8 8 C 1.43200 * 119.99520 * 7.27085 * 7 5 4 9 9 N 5.01239 * 106.84788 * 107.23703 * 2 1 3 10 10 C 1.36586 * 120.00208 * 187.26976 * 7 5 4 11 11 C 1.46741 * 120.00163 * 10.76714 * 10 7 5 12 12 C 1.40095 * 120.16762 * 226.19744 * 11 10 7 13 13 C 1.37836 * 119.91341 * 179.74396 * 12 11 10 14 14 C 1.38378 * 120.25315 * 0.53300 * 13 12 11 15 15 C 1.38896 * 120.33634 * 359.72206 * 14 13 12 16 16 O 1.35909 * 119.96352 * 179.97438 * 15 14 13 17 17 C 1.42905 * 116.99655 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.47321 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47287 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00094 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99822 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00061 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99667 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46788 * 90.00339 * 23 21 19 25 25 H 1.48495 * 109.46924 * 210.00054 * 23 21 19 26 26 H 1.48494 * 109.47055 * 330.00377 * 23 21 19 27 27 C 1.38365 * 120.07823 * 0.02562 * 15 14 13 28 28 H 1.09003 * 109.46421 * 60.00280 * 1 2 3 29 29 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47118 * 300.00035 * 1 2 3 31 31 H 1.08994 * 109.47706 * 239.99525 * 2 1 3 32 32 H 1.09006 * 109.47090 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47302 * 299.99180 * 3 2 1 34 34 H 1.09005 * 109.47698 * 59.99560 * 3 2 1 35 35 H 0.96993 * 120.00688 * 265.00458 * 4 2 1 36 36 H 1.07997 * 119.99883 * 190.49915 * 10 7 5 37 37 H 1.08001 * 120.04180 * 359.97438 * 12 11 10 38 38 H 1.07995 * 119.87188 * 180.23024 * 13 12 11 39 39 H 1.07995 * 119.82750 * 179.69443 * 14 13 12 40 40 H 1.09002 * 109.47235 * 300.00425 * 17 16 15 41 41 H 1.09007 * 109.47156 * 60.00037 * 17 16 15 42 42 H 1.09003 * 109.46577 * 299.99785 * 18 17 16 43 43 H 1.08994 * 109.46821 * 59.99843 * 18 17 16 44 44 H 0.97003 * 119.99498 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.12362 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -2.0321 1.1946 6 8 1.8583 -2.6695 0.1997 7 6 2.6384 -2.7262 2.3968 8 6 2.8312 -1.9986 3.6150 9 7 2.9828 -1.4215 4.5818 10 6 2.9102 -4.0639 2.3499 11 6 2.9422 -4.7613 1.0592 12 6 2.2866 -5.9899 0.9063 13 6 2.3157 -6.6380 -0.3098 14 6 2.9995 -6.0850 -1.3783 15 6 3.6576 -4.8701 -1.2369 16 8 4.3274 -4.3342 -2.2911 17 6 4.3119 -5.0743 -3.5134 18 6 5.1127 -4.3199 -4.5767 19 6 5.0959 -5.1001 -5.8659 20 1 4.5673 -6.0403 -5.9212 21 6 5.7553 -4.6136 -6.9747 22 7 6.3985 -3.4685 -6.9074 23 14 5.7350 -5.5811 -8.5726 24 1 4.5684 -5.1619 -9.3902 25 1 6.9874 -5.3187 -9.3260 26 1 5.6330 -7.0317 -8.2716 27 6 3.6331 -4.2052 -0.0237 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6766 1.9565 0.8899 35 1 2.2490 -0.1822 1.9895 36 1 3.1057 -4.6075 3.2624 37 1 1.7559 -6.4269 1.7393 38 1 1.8069 -7.5832 -0.4280 39 1 3.0219 -6.6011 -2.3267 40 1 4.7591 -6.0549 -3.3501 41 1 3.2828 -5.1961 -3.8515 42 1 4.6658 -3.3392 -4.7401 43 1 6.1417 -4.1985 -4.2384 44 1 6.8627 -3.1265 -7.6875 45 1 4.1449 -3.2606 0.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102598548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:47 Heat of formation + Delta-G solvation = -9.071993 kcal Electronic energy + Delta-G solvation = -26892.391858 eV Core-core repulsion = 23068.738174 eV Total energy + Delta-G solvation = -3823.653684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.51740 -39.46520 -37.47803 -36.99879 -36.11758 -33.90103 -33.33903 -31.89667 -30.84074 -29.81626 -29.15009 -27.43433 -25.42317 -24.70396 -22.75126 -22.21066 -21.38854 -20.95280 -20.08032 -19.03830 -17.71376 -16.44749 -16.23684 -15.96284 -15.69218 -15.36988 -15.24147 -15.10764 -14.62953 -14.47787 -14.36781 -13.94600 -13.80064 -13.65830 -13.14867 -13.06794 -12.92904 -12.83408 -12.63600 -12.50112 -12.37482 -12.31130 -11.61586 -11.58097 -11.51461 -11.33963 -11.16752 -10.90228 -10.75151 -10.48612 -10.21567 -9.98821 -9.82140 -9.63863 -9.29229 -9.28215 -8.44367 -8.30128 -7.79381 -6.09628 -4.14045 0.06997 1.64394 1.72330 2.20907 2.44427 2.91057 3.27810 3.29804 3.33797 3.36509 3.46049 3.85406 3.96741 4.39397 4.41862 4.64513 4.68130 4.85248 4.98964 5.05082 5.16387 5.25535 5.26908 5.33423 5.35104 5.46271 5.48424 5.56228 5.60061 5.75124 5.80771 5.92208 6.04951 6.05651 6.07837 6.12960 6.29879 6.42978 6.56110 6.57364 6.73968 6.92171 7.05215 7.24541 7.52144 7.66017 7.82735 8.02292 8.09281 8.25269 8.91607 9.50196 11.01967 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.002850 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.041587 B = 9822.671585 C =11303.729222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 C -0.161 4.161 4 N -0.724 5.724 5 C 0.562 3.438 6 O -0.497 6.497 7 C -0.136 4.136 8 C 0.253 3.747 9 N -0.413 5.413 10 C 0.081 3.919 11 C -0.062 4.062 12 C -0.133 4.133 13 C -0.093 4.093 14 C -0.186 4.186 15 C 0.137 3.863 16 O -0.315 6.315 17 C 0.066 3.934 18 C 0.026 3.974 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.076 4.076 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.395 0.605 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 2.210 19.675 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 C -0.219 4.219 4 N -0.376 5.376 5 C 0.347 3.653 6 O -0.372 6.372 7 C -0.143 4.143 8 C -0.062 4.062 9 N -0.089 5.089 10 C 0.057 3.943 11 C -0.062 4.062 12 C -0.151 4.151 13 C -0.111 4.111 14 C -0.205 4.205 15 C 0.090 3.910 16 O -0.229 6.229 17 C -0.008 4.008 18 C -0.011 4.011 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.725 3.275 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.095 4.095 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.167 0.833 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.323 2.994 20.260 22.934 hybrid contribution -0.091 -0.541 -0.927 1.077 sum -10.413 2.453 19.333 22.096 Atomic orbital electron populations 1.22181 0.95177 1.02796 1.01958 1.21011 0.94212 0.92922 0.88669 1.22086 1.02023 0.94951 1.02853 1.46074 1.67785 1.06701 1.17000 1.17687 0.78670 0.82174 0.86729 1.91011 1.48642 1.64865 1.32673 1.18034 1.13560 0.93856 0.88866 1.25573 0.93692 0.94125 0.92819 1.81303 1.09432 1.07995 1.10207 1.22849 0.82477 0.91121 0.97811 1.18294 1.00898 0.95127 0.91898 1.20932 1.01814 0.94259 0.98100 1.20723 0.98486 0.99497 0.92376 1.21547 1.01637 0.96714 1.00639 1.18914 0.91855 0.91775 0.88434 1.86179 1.68084 1.48996 1.19598 1.23312 1.00763 0.95462 0.81281 1.19111 0.95398 0.96221 0.90387 1.20975 1.33587 1.06732 0.95101 0.92377 1.24984 0.95068 0.95064 0.99051 1.69976 1.33413 1.19153 1.30235 0.86499 0.77563 0.80259 0.83138 1.20498 1.21068 1.19761 1.20310 1.00778 0.98693 0.89744 0.91444 0.91850 0.92784 0.88498 0.91738 0.90615 0.92350 0.77101 0.83311 0.86028 0.85908 0.85185 0.93213 0.93154 0.95420 0.95454 0.92731 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.30 3.18 -67.93 -0.22 1.08 16 3 C -0.16 -1.20 9.38 37.16 0.35 -0.85 16 4 N -0.72 -6.95 5.03 -54.93 -0.28 -7.22 16 5 C 0.56 6.43 6.86 -12.59 -0.09 6.34 16 6 O -0.50 -7.35 12.10 5.25 0.06 -7.29 16 7 C -0.14 -1.27 5.72 -104.90 -0.60 -1.87 16 8 C 0.25 2.38 14.21 -22.47 -0.32 2.06 16 9 N -0.41 -4.58 18.54 41.84 0.78 -3.81 16 10 C 0.08 0.69 9.46 -36.75 -0.35 0.34 16 11 C -0.06 -0.72 4.45 -105.12 -0.47 -1.19 16 12 C -0.13 -1.44 9.80 -39.03 -0.38 -1.82 16 13 C -0.09 -1.13 10.02 -39.68 -0.40 -1.53 16 14 C -0.19 -2.83 9.04 -39.29 -0.36 -3.19 16 15 C 0.14 2.37 6.68 -39.29 -0.26 2.10 16 16 O -0.32 -6.50 10.13 -19.46 -0.20 -6.70 16 17 C 0.07 1.41 4.68 37.16 0.17 1.58 16 18 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 19 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 23 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.08 -1.14 6.66 -38.89 -0.26 -1.40 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.40 3.17 7.51 -40.82 -0.31 2.86 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.13 1.94 6.27 -52.49 -0.33 1.61 16 40 H 0.05 1.00 7.65 -51.93 -0.40 0.60 16 41 H 0.05 1.03 7.66 -51.92 -0.40 0.64 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 1.83 7.30 -52.49 -0.38 1.45 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -32.43 388.80 -7.84 -40.27 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.40 Total: 0.59 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.38 Total: -12.21 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 1.24 Total: -36.68 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.13 Total: -13.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.43 -7.84 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102598548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.199 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds