Wall clock time and date at job start Tue Mar 31 2020 16:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47006 * 2 1 4 4 N 1.46503 * 109.46939 * 119.99204 * 2 1 3 5 5 C 1.34777 * 119.99545 * 85.00304 * 4 2 1 6 6 O 1.21637 * 120.00112 * 0.02562 * 5 4 2 7 7 C 1.47257 * 120.00261 * 179.97438 * 5 4 2 8 8 C 1.43200 * 119.99520 * 7.27085 * 7 5 4 9 9 N 5.01239 * 106.84788 * 107.23703 * 2 1 3 10 10 C 1.36586 * 120.00208 * 187.26976 * 7 5 4 11 11 C 1.46741 * 120.00163 * 10.76714 * 10 7 5 12 12 C 1.40095 * 120.16762 * 226.19744 * 11 10 7 13 13 C 1.37836 * 119.91341 * 179.74396 * 12 11 10 14 14 C 1.38378 * 120.25315 * 0.53300 * 13 12 11 15 15 C 1.38896 * 120.33634 * 359.72206 * 14 13 12 16 16 O 1.35909 * 119.96352 * 179.97438 * 15 14 13 17 17 C 1.42905 * 116.99655 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.47321 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47287 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00094 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99822 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00061 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99667 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46788 * 90.00339 * 23 21 19 25 25 H 1.48495 * 109.46924 * 210.00054 * 23 21 19 26 26 H 1.48494 * 109.47055 * 330.00377 * 23 21 19 27 27 C 1.38365 * 120.07823 * 0.02562 * 15 14 13 28 28 H 1.09003 * 109.46421 * 60.00280 * 1 2 3 29 29 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47118 * 300.00035 * 1 2 3 31 31 H 1.08994 * 109.47706 * 239.99525 * 2 1 3 32 32 H 1.09006 * 109.47090 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47302 * 299.99180 * 3 2 1 34 34 H 1.09005 * 109.47698 * 59.99560 * 3 2 1 35 35 H 0.96993 * 120.00688 * 265.00458 * 4 2 1 36 36 H 1.07997 * 119.99883 * 190.49915 * 10 7 5 37 37 H 1.08001 * 120.04180 * 359.97438 * 12 11 10 38 38 H 1.07995 * 119.87188 * 180.23024 * 13 12 11 39 39 H 1.07995 * 119.82750 * 179.69443 * 14 13 12 40 40 H 1.09002 * 109.47235 * 300.00425 * 17 16 15 41 41 H 1.09007 * 109.47156 * 60.00037 * 17 16 15 42 42 H 1.09003 * 109.46577 * 299.99785 * 18 17 16 43 43 H 1.08994 * 109.46821 * 59.99843 * 18 17 16 44 44 H 0.97003 * 119.99498 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.12362 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -2.0321 1.1946 6 8 1.8583 -2.6695 0.1997 7 6 2.6384 -2.7262 2.3968 8 6 2.8312 -1.9986 3.6150 9 7 2.9828 -1.4215 4.5818 10 6 2.9102 -4.0639 2.3499 11 6 2.9422 -4.7613 1.0592 12 6 2.2866 -5.9899 0.9063 13 6 2.3157 -6.6380 -0.3098 14 6 2.9995 -6.0850 -1.3783 15 6 3.6576 -4.8701 -1.2369 16 8 4.3274 -4.3342 -2.2911 17 6 4.3119 -5.0743 -3.5134 18 6 5.1127 -4.3199 -4.5767 19 6 5.0959 -5.1001 -5.8659 20 1 4.5673 -6.0403 -5.9212 21 6 5.7553 -4.6136 -6.9747 22 7 6.3985 -3.4685 -6.9074 23 14 5.7350 -5.5811 -8.5726 24 1 4.5684 -5.1619 -9.3902 25 1 6.9874 -5.3187 -9.3260 26 1 5.6330 -7.0317 -8.2716 27 6 3.6331 -4.2052 -0.0237 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6766 1.9565 0.8899 35 1 2.2490 -0.1822 1.9895 36 1 3.1057 -4.6075 3.2624 37 1 1.7559 -6.4269 1.7393 38 1 1.8069 -7.5832 -0.4280 39 1 3.0219 -6.6011 -2.3267 40 1 4.7591 -6.0549 -3.3501 41 1 3.2828 -5.1961 -3.8515 42 1 4.6658 -3.3392 -4.7401 43 1 6.1417 -4.1985 -4.2384 44 1 6.8627 -3.1265 -7.6875 45 1 4.1449 -3.2606 0.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102598548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:46 Heat of formation + Delta-G solvation = -28.492022 kcal Electronic energy + Delta-G solvation = -26893.233973 eV Core-core repulsion = 23068.738174 eV Total energy + Delta-G solvation = -3824.495800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47593 -40.65326 -38.62164 -37.88374 -37.01924 -35.48654 -34.73630 -32.74659 -32.55389 -30.92592 -30.43673 -28.13183 -27.05244 -25.94380 -23.84698 -23.29941 -22.92011 -21.79256 -21.31748 -19.87926 -19.11896 -18.18538 -17.21653 -17.07838 -16.89205 -16.82319 -16.48304 -16.35049 -16.03920 -15.47507 -15.17910 -14.80012 -14.66776 -14.61204 -14.32420 -14.32052 -14.14600 -13.94505 -13.83285 -13.75337 -13.23383 -13.10177 -13.08741 -13.02104 -12.64577 -12.56443 -12.47707 -12.33196 -11.95582 -11.94547 -11.64053 -11.55436 -11.37837 -11.13978 -10.81880 -10.61726 -10.14933 -9.29007 -8.99454 -8.26162 -6.39911 -0.74244 0.65529 0.67398 1.41093 1.42623 1.43541 1.54676 1.60177 2.12797 2.29453 2.46781 2.56339 2.67727 2.92926 3.08191 3.66120 3.80248 3.94220 3.95618 4.11923 4.21667 4.24757 4.28851 4.29863 4.34402 4.48060 4.60656 4.63581 4.70552 4.71456 4.75356 4.88046 4.92033 5.03016 5.08227 5.21190 5.29840 5.32521 5.44583 5.47538 5.49022 5.52216 5.58596 5.69098 5.92434 6.08595 6.29048 6.43544 6.63226 6.74969 7.17103 7.30217 8.87115 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.002850 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.041587 B = 9822.671585 C =11303.729222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.716 5.716 5 C 0.556 3.444 6 O -0.537 6.537 7 C -0.137 4.137 8 C 0.277 3.723 9 N -0.437 5.437 10 C 0.101 3.899 11 C -0.059 4.059 12 C -0.116 4.116 13 C -0.092 4.092 14 C -0.201 4.201 15 C 0.092 3.908 16 O -0.345 6.345 17 C 0.087 3.913 18 C 0.030 3.970 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.976 3.024 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.258 1.258 27 C -0.087 4.087 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.405 0.595 36 H 0.199 0.801 37 H 0.169 0.831 38 H 0.155 0.845 39 H 0.124 0.876 40 H 0.061 0.939 41 H 0.055 0.945 42 H -0.006 1.006 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 0.444 21.712 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 C -0.213 4.213 4 N -0.368 5.368 5 C 0.342 3.658 6 O -0.414 6.414 7 C -0.144 4.144 8 C -0.037 4.037 9 N -0.114 5.114 10 C 0.078 3.922 11 C -0.059 4.059 12 C -0.134 4.134 13 C -0.109 4.109 14 C -0.220 4.220 15 C 0.047 3.953 16 O -0.260 6.260 17 C 0.013 3.987 18 C -0.007 4.007 19 C -0.583 4.583 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.571 5.571 23 Si 0.799 3.201 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.182 1.182 27 C -0.106 4.106 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.240 0.760 36 H 0.216 0.784 37 H 0.186 0.814 38 H 0.173 0.827 39 H 0.142 0.858 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.860 1.245 22.344 25.327 hybrid contribution 0.328 0.054 -1.425 1.463 sum -11.532 1.298 20.919 23.922 Atomic orbital electron populations 1.22112 0.94349 1.01757 1.03185 1.21010 0.94866 0.93804 0.87489 1.22044 1.01608 0.93491 1.04126 1.46063 1.67007 1.06460 1.17279 1.18084 0.78193 0.82565 0.86956 1.91004 1.50536 1.65697 1.34207 1.17795 1.14560 0.94130 0.87900 1.25270 0.92793 0.93443 0.92190 1.81348 1.10501 1.08550 1.10992 1.23181 0.80543 0.90596 0.97905 1.18586 0.99613 0.95556 0.92158 1.21490 0.99909 0.93131 0.98844 1.21136 0.97444 1.00553 0.91817 1.21651 1.02441 0.96176 1.01750 1.19271 0.94107 0.93708 0.88182 1.86077 1.69918 1.49886 1.20145 1.22807 0.99981 0.94848 0.81095 1.18942 0.94212 0.95348 0.92216 1.21398 1.33797 1.07323 0.95811 0.91107 1.26048 0.94333 0.96074 1.03240 1.70126 1.34295 1.21048 1.31596 0.85286 0.77793 0.79145 0.77857 1.19578 1.20605 1.18214 1.20368 1.01733 0.98337 0.90168 0.90618 0.93946 0.91118 0.91873 0.92340 0.89915 0.90471 0.75995 0.78410 0.81379 0.82694 0.85765 0.92095 0.92708 0.98710 0.98360 0.92449 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.48 71.98 0.68 -2.09 16 2 C 0.13 2.63 3.18 44.99 0.14 2.78 16 3 C -0.16 -2.27 9.38 71.98 0.68 -1.59 16 4 N -0.72 -13.78 5.03 -445.95 -2.24 -16.02 16 5 C 0.56 12.68 6.86 86.61 0.59 13.27 16 6 O -0.54 -16.41 12.10 -4.15 -0.05 -16.46 16 7 C -0.14 -2.29 5.72 -20.05 -0.11 -2.41 16 8 C 0.28 4.60 14.21 88.33 1.25 5.86 16 9 N -0.44 -8.82 18.54 19.01 0.35 -8.47 16 10 C 0.10 1.36 9.46 24.11 0.23 1.59 16 11 C -0.06 -1.25 4.45 -20.18 -0.09 -1.34 16 12 C -0.12 -2.07 9.80 22.63 0.22 -1.85 16 13 C -0.09 -1.99 10.02 22.21 0.22 -1.77 16 14 C -0.20 -6.12 9.04 22.46 0.20 -5.92 16 15 C 0.09 3.34 6.68 22.46 0.15 3.49 16 16 O -0.35 -15.40 10.13 -92.53 -0.94 -16.33 16 17 C 0.09 3.95 4.68 71.98 0.34 4.29 16 18 C 0.03 1.68 5.34 29.85 0.16 1.84 16 19 C -0.55 -31.24 9.11 25.60 0.23 -31.00 16 20 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 21 C 0.00 0.09 5.46 84.66 0.46 0.55 16 22 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 23 Si 0.98 43.76 29.54 68.60 2.03 45.79 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 C -0.09 -2.66 6.66 22.72 0.15 -2.51 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.40 6.18 7.51 -92.71 -0.70 5.48 16 36 H 0.20 0.78 8.06 -2.91 -0.02 0.75 16 37 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.12 3.79 6.27 -2.91 -0.02 3.77 16 40 H 0.06 2.57 7.65 -2.39 -0.02 2.55 16 41 H 0.05 2.38 7.66 -2.38 -0.02 2.36 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 45 H 0.11 3.49 7.30 -2.91 -0.02 3.47 16 Total: -1.00 -75.78 388.80 5.26 -70.52 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.31 Total: 14.75 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 5.51 Total: -16.81 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -1.60 Total: -81.45 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.99 Total: -32.80 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -75.78 5.26 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102598548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.028 kcal (2) G-P(sol) polarization free energy of solvation -75.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds