Wall clock time and date at job start Tue Mar 31 2020 16:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 N 1.46503 * 109.46573 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99545 * 179.97438 * 4 3 2 6 6 O 1.21637 * 120.00112 * 0.02562 * 5 4 3 7 7 C 1.47257 * 120.00261 * 179.97438 * 5 4 3 8 8 C 1.43200 * 119.99520 * 7.27085 * 7 5 4 9 9 N 5.42776 * 174.80260 * 325.11486 * 2 1 3 10 10 C 1.36586 * 120.00208 * 187.26976 * 7 5 4 11 11 C 1.46741 * 120.00163 * 10.76714 * 10 7 5 12 12 C 1.40095 * 120.16762 * 226.19744 * 11 10 7 13 13 C 1.37836 * 119.91341 * 179.74396 * 12 11 10 14 14 C 1.38378 * 120.25315 * 0.53300 * 13 12 11 15 15 C 1.38896 * 120.33634 * 359.72206 * 14 13 12 16 16 O 1.35909 * 119.96352 * 179.97438 * 15 14 13 17 17 C 1.42905 * 116.99655 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.47321 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47287 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00094 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99822 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00061 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99667 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46747 * 60.00324 * 23 21 19 25 25 H 1.48497 * 109.46723 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47227 * 300.00149 * 23 21 19 27 27 C 1.38365 * 120.07823 * 0.02562 * 15 14 13 28 28 H 1.09007 * 109.47307 * 60.00094 * 1 2 3 29 29 H 1.08995 * 109.47717 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47367 * 300.00245 * 1 2 3 31 31 H 1.09001 * 109.46962 * 239.99832 * 2 1 3 32 32 H 1.09003 * 109.46439 * 120.00143 * 2 1 3 33 33 H 1.09001 * 109.47291 * 60.00033 * 3 2 1 34 34 H 1.08997 * 109.47186 * 299.99666 * 3 2 1 35 35 H 0.96993 * 120.00688 * 0.02562 * 4 3 2 36 36 H 1.07997 * 119.99883 * 190.49915 * 10 7 5 37 37 H 1.08001 * 120.04180 * 359.97438 * 12 11 10 38 38 H 1.07995 * 119.87188 * 180.23024 * 13 12 11 39 39 H 1.07995 * 119.82750 * 179.69443 * 14 13 12 40 40 H 1.09002 * 109.47235 * 300.00425 * 17 16 15 41 41 H 1.09007 * 109.47156 * 60.00037 * 17 16 15 42 42 H 1.09003 * 109.46577 * 299.99785 * 18 17 16 43 43 H 1.08994 * 109.46821 * 59.99843 * 18 17 16 44 44 H 0.97003 * 119.99498 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.12362 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1789 2.6095 0.0002 6 8 3.5708 3.6629 -0.0002 7 6 5.6515 2.6095 0.0014 8 6 6.3675 1.3792 -0.1540 9 7 6.9354 0.4033 -0.2812 10 6 6.3343 3.7830 0.1507 11 6 5.6198 5.0028 0.5440 12 6 5.8559 6.2063 -0.1331 13 6 5.1778 7.3478 0.2373 14 6 4.2723 7.3125 1.2831 15 6 4.0341 6.1261 1.9650 16 8 3.1435 6.1002 2.9913 17 6 2.4890 7.3290 3.3135 18 6 1.5316 7.1049 4.4857 19 6 0.8410 8.4006 4.8250 20 1 1.0630 9.2947 4.2614 21 6 -0.0744 8.4447 5.8552 22 7 -0.3451 7.3559 6.5413 23 14 -0.9299 10.0511 6.2763 24 1 -1.6945 10.5288 5.0962 25 1 -1.8592 9.8334 7.4139 26 1 0.0843 11.0679 6.6538 27 6 4.7032 4.9709 1.6014 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9900 0.6023 0.0006 36 1 7.4009 3.8121 -0.0166 37 1 6.5655 6.2389 -0.9466 38 1 5.3576 8.2744 -0.2875 39 1 3.7485 8.2121 1.5707 40 1 3.2335 8.0755 3.5905 41 1 1.9277 7.6798 2.4473 42 1 0.7871 6.3584 4.2090 43 1 2.0932 6.7545 5.3515 44 1 -0.9889 7.3871 7.2662 45 1 4.5188 4.0481 2.1314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102598695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:55 Heat of formation + Delta-G solvation = -12.146587 kcal Electronic energy + Delta-G solvation = -26578.018292 eV Core-core repulsion = 22754.231283 eV Total energy + Delta-G solvation = -3823.787009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.46744 -39.42561 -37.40257 -37.00263 -35.99512 -33.91305 -33.33752 -32.87606 -30.86049 -30.06964 -29.16553 -26.84067 -25.19178 -24.37881 -22.28172 -22.18922 -21.76127 -21.29154 -20.08691 -18.86410 -17.71846 -16.44583 -16.28133 -16.04244 -15.68295 -15.66727 -15.35388 -15.22795 -14.76229 -14.62339 -14.43968 -13.94037 -13.83618 -13.62217 -13.21428 -13.11837 -12.93650 -12.87498 -12.68168 -12.52753 -12.30358 -12.30106 -11.58915 -11.54056 -11.40816 -11.34083 -11.16737 -10.88424 -10.77076 -10.48557 -10.23859 -10.00183 -9.81823 -9.63825 -9.29941 -9.26223 -8.43912 -8.30623 -7.79487 -6.09280 -4.13833 0.06552 1.64221 1.72211 2.20148 2.43610 2.90665 3.29175 3.29272 3.33627 3.35344 3.45390 3.85417 3.96632 4.39653 4.42208 4.57550 4.64930 4.69840 4.95136 4.99111 5.15744 5.25177 5.27104 5.31472 5.37225 5.38347 5.47597 5.54778 5.60149 5.76120 5.82183 5.85084 5.95485 6.05683 6.07982 6.12794 6.19548 6.42828 6.56015 6.57379 6.74020 6.92131 7.04532 7.21020 7.52110 7.66226 7.82819 8.00048 8.09413 8.25442 8.91605 9.50333 11.02278 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.002874 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.378798 B = 9738.901509 C =11762.030413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.729 5.729 5 C 0.560 3.440 6 O -0.497 6.497 7 C -0.136 4.136 8 C 0.252 3.748 9 N -0.413 5.413 10 C 0.082 3.918 11 C -0.062 4.062 12 C -0.133 4.133 13 C -0.093 4.093 14 C -0.186 4.186 15 C 0.137 3.863 16 O -0.315 6.315 17 C 0.066 3.934 18 C 0.026 3.974 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.898 3.102 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.077 4.077 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.264 0.736 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.186 -10.864 -16.087 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.381 5.381 5 C 0.346 3.654 6 O -0.372 6.372 7 C -0.143 4.143 8 C -0.062 4.062 9 N -0.089 5.089 10 C 0.058 3.942 11 C -0.063 4.063 12 C -0.151 4.151 13 C -0.111 4.111 14 C -0.205 4.205 15 C 0.090 3.910 16 O -0.229 6.229 17 C -0.008 4.008 18 C -0.011 4.011 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.096 4.096 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.230 0.770 36 H 0.167 0.833 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.366 -11.846 -15.993 22.919 hybrid contribution -0.526 0.939 0.200 1.095 sum 10.840 -10.906 -15.793 22.043 Atomic orbital electron populations 1.21679 0.94265 1.02151 1.02729 1.21740 0.97282 0.95808 1.02572 1.21486 0.78544 0.97289 1.03270 1.45958 1.07883 1.08249 1.75963 1.17680 0.85945 0.84259 0.77548 1.91019 1.68496 1.29836 1.47829 1.18011 0.92569 0.88044 1.15682 1.25574 0.93915 0.93090 0.93638 1.81308 1.07727 1.10453 1.09427 1.22851 0.99355 0.89717 0.82258 1.18299 0.98347 0.92120 0.97502 1.20934 1.01819 0.91507 1.00840 1.20725 0.95896 0.97999 0.96458 1.21549 1.02047 0.98069 0.98871 1.18915 0.90161 0.93380 0.88514 1.86179 1.52388 1.37757 1.46529 1.23315 0.94786 0.82796 0.99934 1.19105 0.92964 0.98043 0.90969 1.20939 1.23868 0.94841 1.16835 0.92423 1.24982 0.96588 0.96642 0.95927 1.69966 1.34051 1.27544 1.21229 0.86557 0.79424 0.83435 0.78018 1.20082 1.21134 1.20097 1.20313 0.95040 0.96562 0.97653 0.92289 0.92244 0.91905 0.91560 0.91276 0.90537 0.91079 0.77004 0.83266 0.86004 0.85889 0.85168 0.93207 0.93146 0.95420 0.95461 0.92670 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.14 -0.98 6.05 -26.73 -0.16 -1.14 16 3 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 4 N -0.73 -7.04 5.51 -61.43 -0.34 -7.38 16 5 C 0.56 6.51 6.89 -12.59 -0.09 6.42 16 6 O -0.50 -7.51 12.43 5.25 0.07 -7.45 16 7 C -0.14 -1.28 5.72 -104.90 -0.60 -1.88 16 8 C 0.25 2.37 14.21 -22.47 -0.32 2.05 16 9 N -0.41 -4.56 18.54 41.84 0.78 -3.79 16 10 C 0.08 0.70 9.46 -36.75 -0.35 0.35 16 11 C -0.06 -0.73 4.45 -105.12 -0.47 -1.20 16 12 C -0.13 -1.45 9.80 -39.03 -0.38 -1.83 16 13 C -0.09 -1.13 10.02 -39.68 -0.40 -1.53 16 14 C -0.19 -2.84 9.04 -39.29 -0.36 -3.20 16 15 C 0.14 2.38 6.68 -39.29 -0.26 2.12 16 16 O -0.32 -6.53 10.13 -19.46 -0.20 -6.73 16 17 C 0.07 1.41 4.68 37.16 0.17 1.58 16 18 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 19 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 23 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.08 -1.15 6.66 -38.89 -0.26 -1.41 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 3.15 7.38 -40.82 -0.30 2.85 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.95 6.27 -52.49 -0.33 1.62 16 40 H 0.05 1.00 7.65 -51.93 -0.40 0.61 16 41 H 0.05 1.04 7.66 -51.92 -0.40 0.64 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 1.84 7.30 -52.49 -0.38 1.46 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -32.67 389.67 -8.21 -40.88 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.42 Total: 0.18 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -3.68 Total: -12.07 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 1.17 Total: -36.86 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.13 Total: -14.18 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.67 -8.21 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102598695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.733 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds