Wall clock time and date at job start Tue Mar 31 2020 16:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 N 1.46503 * 109.46573 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99545 * 179.97438 * 4 3 2 6 6 O 1.21637 * 120.00112 * 0.02562 * 5 4 3 7 7 C 1.47257 * 120.00261 * 179.97438 * 5 4 3 8 8 C 1.43200 * 119.99520 * 7.27085 * 7 5 4 9 9 N 5.42776 * 174.80260 * 325.11486 * 2 1 3 10 10 C 1.36586 * 120.00208 * 187.26976 * 7 5 4 11 11 C 1.46741 * 120.00163 * 10.76714 * 10 7 5 12 12 C 1.40095 * 120.16762 * 226.19744 * 11 10 7 13 13 C 1.37836 * 119.91341 * 179.74396 * 12 11 10 14 14 C 1.38378 * 120.25315 * 0.53300 * 13 12 11 15 15 C 1.38896 * 120.33634 * 359.72206 * 14 13 12 16 16 O 1.35909 * 119.96352 * 179.97438 * 15 14 13 17 17 C 1.42905 * 116.99655 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.47321 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47287 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00094 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99822 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00061 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99667 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46747 * 60.00324 * 23 21 19 25 25 H 1.48497 * 109.46723 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47227 * 300.00149 * 23 21 19 27 27 C 1.38365 * 120.07823 * 0.02562 * 15 14 13 28 28 H 1.09007 * 109.47307 * 60.00094 * 1 2 3 29 29 H 1.08995 * 109.47717 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47367 * 300.00245 * 1 2 3 31 31 H 1.09001 * 109.46962 * 239.99832 * 2 1 3 32 32 H 1.09003 * 109.46439 * 120.00143 * 2 1 3 33 33 H 1.09001 * 109.47291 * 60.00033 * 3 2 1 34 34 H 1.08997 * 109.47186 * 299.99666 * 3 2 1 35 35 H 0.96993 * 120.00688 * 0.02562 * 4 3 2 36 36 H 1.07997 * 119.99883 * 190.49915 * 10 7 5 37 37 H 1.08001 * 120.04180 * 359.97438 * 12 11 10 38 38 H 1.07995 * 119.87188 * 180.23024 * 13 12 11 39 39 H 1.07995 * 119.82750 * 179.69443 * 14 13 12 40 40 H 1.09002 * 109.47235 * 300.00425 * 17 16 15 41 41 H 1.09007 * 109.47156 * 60.00037 * 17 16 15 42 42 H 1.09003 * 109.46577 * 299.99785 * 18 17 16 43 43 H 1.08994 * 109.46821 * 59.99843 * 18 17 16 44 44 H 0.97003 * 119.99498 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.12362 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1789 2.6095 0.0002 6 8 3.5708 3.6629 -0.0002 7 6 5.6515 2.6095 0.0014 8 6 6.3675 1.3792 -0.1540 9 7 6.9354 0.4033 -0.2812 10 6 6.3343 3.7830 0.1507 11 6 5.6198 5.0028 0.5440 12 6 5.8559 6.2063 -0.1331 13 6 5.1778 7.3478 0.2373 14 6 4.2723 7.3125 1.2831 15 6 4.0341 6.1261 1.9650 16 8 3.1435 6.1002 2.9913 17 6 2.4890 7.3290 3.3135 18 6 1.5316 7.1049 4.4857 19 6 0.8410 8.4006 4.8250 20 1 1.0630 9.2947 4.2614 21 6 -0.0744 8.4447 5.8552 22 7 -0.3451 7.3559 6.5413 23 14 -0.9299 10.0511 6.2763 24 1 -1.6945 10.5288 5.0962 25 1 -1.8592 9.8334 7.4139 26 1 0.0843 11.0679 6.6538 27 6 4.7032 4.9709 1.6014 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9900 0.6023 0.0006 36 1 7.4009 3.8121 -0.0166 37 1 6.5655 6.2389 -0.9466 38 1 5.3576 8.2744 -0.2875 39 1 3.7485 8.2121 1.5707 40 1 3.2335 8.0755 3.5905 41 1 1.9277 7.6798 2.4473 42 1 0.7871 6.3584 4.2090 43 1 2.0932 6.7545 5.3515 44 1 -0.9889 7.3871 7.2662 45 1 4.5188 4.0481 2.1314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102598695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:53 Heat of formation + Delta-G solvation = -31.817648 kcal Electronic energy + Delta-G solvation = -26578.871293 eV Core-core repulsion = 22754.231283 eV Total energy + Delta-G solvation = -3824.640010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44814 -40.61886 -38.56841 -37.87978 -36.85443 -35.48864 -34.74889 -33.64440 -32.56348 -31.14957 -30.51440 -27.65171 -26.98281 -25.45757 -23.45869 -23.29926 -22.67783 -22.51517 -21.32566 -19.70953 -19.11917 -18.18750 -17.25938 -17.06211 -16.89415 -16.80386 -16.69152 -16.40658 -16.33875 -15.61561 -15.43669 -14.78067 -14.69319 -14.58227 -14.31932 -14.30514 -14.15120 -13.94591 -13.90307 -13.78401 -13.41406 -13.14644 -13.05050 -12.93034 -12.62414 -12.56547 -12.49420 -12.08054 -11.95700 -11.80600 -11.63847 -11.56916 -11.38978 -11.18034 -10.83229 -10.61093 -10.15718 -9.29976 -8.99870 -8.26051 -6.40002 -0.74881 0.65176 0.67008 1.40988 1.41981 1.45286 1.53189 1.58363 2.11347 2.29381 2.45969 2.55796 2.67123 2.92588 3.08171 3.66840 3.79766 3.89109 3.95393 4.03043 4.21457 4.24534 4.28709 4.30082 4.33781 4.47522 4.60344 4.62516 4.63678 4.72209 4.75171 4.82024 4.95565 5.07822 5.09989 5.19545 5.27623 5.32225 5.41509 5.44353 5.47341 5.51802 5.58376 5.68876 5.92301 6.08454 6.28517 6.39230 6.62956 6.74707 7.13164 7.30122 8.87025 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.002874 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.378798 B = 9738.901509 C =11762.030413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.118 3.882 4 N -0.721 5.721 5 C 0.554 3.446 6 O -0.538 6.538 7 C -0.137 4.137 8 C 0.277 3.723 9 N -0.437 5.437 10 C 0.103 3.897 11 C -0.060 4.060 12 C -0.115 4.115 13 C -0.092 4.092 14 C -0.201 4.201 15 C 0.092 3.908 16 O -0.346 6.346 17 C 0.087 3.913 18 C 0.030 3.970 19 C -0.547 4.547 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.976 3.024 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.262 1.262 27 C -0.088 4.088 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.406 0.594 36 H 0.200 0.800 37 H 0.170 0.830 38 H 0.156 0.844 39 H 0.125 0.875 40 H 0.061 0.939 41 H 0.055 0.945 42 H -0.006 1.006 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.335 -10.041 -18.384 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.006 4.006 4 N -0.372 5.372 5 C 0.340 3.660 6 O -0.416 6.416 7 C -0.144 4.144 8 C -0.037 4.037 9 N -0.113 5.113 10 C 0.079 3.921 11 C -0.060 4.060 12 C -0.133 4.133 13 C -0.109 4.109 14 C -0.220 4.220 15 C 0.047 3.953 16 O -0.261 6.261 17 C 0.013 3.987 18 C -0.007 4.007 19 C -0.585 4.585 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.571 5.571 23 Si 0.799 3.201 24 H -0.188 1.188 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.107 4.107 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.242 0.758 36 H 0.217 0.783 37 H 0.187 0.813 38 H 0.174 0.826 39 H 0.143 0.857 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.544 -11.060 -18.314 25.322 hybrid contribution -1.121 0.587 0.819 1.507 sum 12.423 -10.473 -17.496 23.877 Atomic orbital electron populations 1.21695 0.94209 1.02852 1.02166 1.21692 0.97241 0.94045 1.03529 1.21457 0.78654 0.98760 1.01706 1.45946 1.07963 1.08402 1.74932 1.18105 0.87021 0.84028 0.76805 1.91011 1.69504 1.31179 1.49903 1.17752 0.91131 0.88592 1.16885 1.25260 0.93205 0.92504 0.92733 1.81354 1.08553 1.10919 1.10505 1.23191 1.01207 0.87542 0.80110 1.18598 0.97122 0.94135 0.96143 1.21498 1.01050 0.90168 1.00621 1.21144 0.94546 1.00038 0.95211 1.21656 1.03305 0.96992 1.00066 1.19275 0.91377 0.95470 0.89172 1.86077 1.54079 1.37067 1.48830 1.22810 0.94302 0.83594 0.98039 1.18938 0.92922 0.96946 0.91891 1.21374 1.24222 0.95582 1.17281 0.91078 1.26052 0.97280 1.00738 0.95610 1.70121 1.34841 1.30239 1.21875 0.85339 0.78303 0.78432 0.78011 1.18847 1.20754 1.18695 1.20378 0.96060 0.95288 0.99005 0.92189 0.90859 0.93204 0.89954 0.90830 0.93120 0.91707 0.75834 0.78289 0.81299 0.82645 0.85733 0.92054 0.92699 0.98737 0.98376 0.92440 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.13 -1.79 6.05 30.59 0.19 -1.61 16 3 C 0.12 2.36 5.67 86.38 0.49 2.85 16 4 N -0.72 -13.95 5.51 -466.52 -2.57 -16.52 16 5 C 0.55 12.74 6.89 86.61 0.60 13.34 16 6 O -0.54 -16.67 12.43 -4.15 -0.05 -16.73 16 7 C -0.14 -2.28 5.72 -20.05 -0.11 -2.39 16 8 C 0.28 4.56 14.21 88.33 1.25 5.82 16 9 N -0.44 -8.74 18.54 19.01 0.35 -8.39 16 10 C 0.10 1.37 9.46 24.11 0.23 1.60 16 11 C -0.06 -1.27 4.45 -20.18 -0.09 -1.36 16 12 C -0.12 -2.05 9.80 22.63 0.22 -1.83 16 13 C -0.09 -1.99 10.02 22.21 0.22 -1.76 16 14 C -0.20 -6.13 9.04 22.46 0.20 -5.92 16 15 C 0.09 3.34 6.68 22.46 0.15 3.49 16 16 O -0.35 -15.45 10.13 -92.53 -0.94 -16.39 16 17 C 0.09 3.95 4.68 71.98 0.34 4.29 16 18 C 0.03 1.70 5.34 29.85 0.16 1.86 16 19 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 20 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 21 C 0.00 0.10 5.46 84.66 0.46 0.56 16 22 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 23 Si 0.98 43.77 29.54 68.60 2.03 45.80 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 C -0.09 -2.71 6.66 22.72 0.15 -2.55 16 28 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.41 6.16 7.38 -92.71 -0.68 5.47 16 36 H 0.20 0.73 8.06 -2.91 -0.02 0.70 16 37 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.12 3.80 6.27 -2.91 -0.02 3.78 16 40 H 0.06 2.58 7.65 -2.39 -0.02 2.57 16 41 H 0.05 2.39 7.66 -2.38 -0.02 2.37 16 42 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.11 3.50 7.30 -2.91 -0.02 3.48 16 Total: -1.00 -76.14 389.67 4.83 -71.31 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.32 Total: 14.19 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.40 Total: -16.20 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -1.93 Total: -81.98 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.99 Total: -33.12 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -76.14 4.83 -71.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102598695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.494 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds