Wall clock time and date at job start Tue Mar 31 2020 15:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.09002 * 109.47086 * 55.00283 * 3 2 1 5 5 C 1.52998 * 109.47366 * 175.00255 * 3 2 1 6 6 O 1.42902 * 109.47234 * 295.00535 * 3 2 1 7 7 C 1.35689 * 117.00059 * 152.24669 * 6 3 2 8 8 C 1.38593 * 120.16183 * 4.61725 * 7 6 3 9 9 C 1.38139 * 120.11209 * 180.02562 * 8 7 6 10 10 C 1.38580 * 120.44430 * 0.02562 * 9 8 7 11 11 C 1.37747 * 120.32014 * 359.97438 * 10 9 8 12 12 C 1.39961 * 119.87720 * 359.72427 * 11 10 9 13 13 C 1.46885 * 120.21741 * 180.27579 * 12 11 10 14 14 C 1.35158 * 119.99890 * 0.27317 * 13 12 11 15 15 C 1.41788 * 119.99622 * 180.02562 * 14 13 12 16 16 O 1.21779 * 120.00531 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99653 * 180.02562 * 15 14 13 18 18 C 1.36749 * 119.99994 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00051 * 320.52740 * 18 17 15 20 20 C 1.39097 * 119.99923 * 140.53108 * 18 17 15 21 21 N 1.31351 * 119.99884 * 162.37163 * 20 18 17 22 22 Si 1.86797 * 119.99999 * 342.36168 * 20 18 17 23 23 H 1.48505 * 109.46770 * 95.37813 * 22 20 18 24 24 H 1.48504 * 109.47328 * 215.37372 * 22 20 18 25 25 H 1.48492 * 109.47358 * 335.37401 * 22 20 18 26 26 C 1.46500 * 120.00210 * 359.97438 * 17 15 14 27 27 C 1.47197 * 109.47308 * 84.34497 * 26 17 15 28 28 N 9.90199 * 90.76415 * 311.86818 * 2 1 3 29 29 H 1.08993 * 109.47490 * 59.99694 * 1 2 3 30 30 H 1.08999 * 109.46723 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46772 * 299.99344 * 1 2 3 32 32 H 1.08998 * 109.47283 * 240.00648 * 2 1 3 33 33 H 1.08998 * 109.47856 * 120.00047 * 2 1 3 34 34 H 1.09004 * 109.47303 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47321 * 300.00107 * 5 3 2 36 36 H 1.09002 * 109.46995 * 59.99973 * 5 3 2 37 37 H 1.08003 * 119.94595 * 0.03060 * 8 7 6 38 38 H 1.08006 * 119.78428 * 180.02562 * 9 8 7 39 39 H 1.08000 * 119.83931 * 180.02562 * 10 9 8 40 40 H 1.08001 * 120.06122 * 180.02562 * 11 10 9 41 41 H 1.08007 * 120.00170 * 180.28092 * 13 12 11 42 42 H 1.07997 * 120.00040 * 0.02562 * 14 13 12 43 43 H 0.96995 * 119.99668 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.47112 * 204.34640 * 26 17 15 45 45 H 1.09002 * 109.46990 * 324.34212 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0815 -1.2210 7 6 1.4962 3.4278 -1.1862 8 6 1.7847 4.1352 -0.0298 9 6 1.6151 5.5057 0.0047 10 6 1.1560 6.1848 -1.1126 11 6 0.8638 5.4997 -2.2714 12 6 1.0367 4.1118 -2.3232 13 6 0.7332 3.3746 -3.5569 14 6 0.2907 4.0373 -4.6486 15 6 -0.0028 3.3255 -5.8393 16 8 0.1434 2.1172 -5.8782 17 7 -0.4435 3.9864 -6.9281 18 6 -0.7261 3.3001 -8.0766 19 1 -0.0900 2.4851 -8.3890 20 6 -1.8326 3.6517 -8.8426 21 7 -1.9214 3.2518 -10.0905 22 14 -3.1925 4.6925 -8.0963 23 1 -2.9618 6.1211 -8.4295 24 1 -4.5034 4.2617 -8.6451 25 1 -3.1934 4.5220 -6.6212 26 6 -0.6200 5.4400 -6.8811 27 6 0.6663 6.0996 -7.1586 28 7 1.6621 6.6082 -7.3732 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9281 2.4721 0.1261 35 1 3.8533 0.9570 1.0570 36 1 3.9994 0.9054 -0.7162 37 1 2.1426 3.6141 0.8459 38 1 1.8419 6.0517 0.9086 39 1 1.0274 7.2564 -1.0749 40 1 0.5067 6.0332 -3.1399 41 1 0.8636 2.3030 -3.5916 42 1 0.1606 5.1088 -4.6140 43 1 -2.6932 3.4967 -10.6245 44 1 -1.3520 5.7415 -7.6304 45 1 -0.9718 5.7315 -5.8915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105597932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:30 Heat of formation + Delta-G solvation = 13.245937 kcal Electronic energy + Delta-G solvation = -27328.666104 eV Core-core repulsion = 23505.980198 eV Total energy + Delta-G solvation = -3822.685906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.52817 -39.25549 -37.95963 -36.26509 -34.81230 -34.40955 -33.68567 -32.22782 -30.36979 -30.14872 -29.33532 -27.78961 -25.75284 -24.33767 -23.71862 -22.66576 -21.13240 -20.53755 -18.72541 -18.48682 -18.14227 -17.03733 -16.58100 -16.01719 -15.67377 -15.49037 -15.34780 -14.97103 -14.30615 -14.07186 -13.98391 -13.72272 -13.62135 -13.55905 -13.42760 -13.20501 -12.86944 -12.63447 -12.50935 -12.34540 -12.22439 -12.10506 -11.95633 -11.85138 -11.59706 -11.31866 -11.23522 -11.02121 -10.96578 -10.85937 -10.68783 -10.47056 -10.16111 -9.99496 -9.26463 -8.74618 -8.68061 -8.05715 -7.79842 -6.51239 -4.11728 0.68071 1.32327 2.22933 2.89477 3.00292 3.04218 3.10129 3.14726 3.24567 3.71585 4.00556 4.15504 4.34838 4.37307 4.51347 4.58204 4.64470 4.72316 4.76538 4.91686 5.00042 5.04857 5.14998 5.18656 5.26428 5.31192 5.35213 5.37303 5.48856 5.51833 5.60855 5.65527 5.73977 5.80253 5.84141 5.90464 5.97133 6.11369 6.12766 6.20140 6.38367 6.61423 6.68983 6.86948 7.33191 7.42000 7.96571 8.15277 8.35451 8.81390 9.12128 9.58578 10.59980 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.003322 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.269742 B = 8426.546941 C = 9452.566620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C 0.079 3.921 4 H 0.074 0.926 5 C -0.180 4.180 6 O -0.296 6.296 7 C 0.151 3.849 8 C -0.215 4.215 9 C -0.078 4.078 10 C -0.159 4.159 11 C -0.070 4.070 12 C -0.091 4.091 13 C -0.034 4.034 14 C -0.201 4.201 15 C 0.503 3.497 16 O -0.553 6.553 17 N -0.457 5.457 18 C -0.316 4.316 19 H 0.111 0.889 20 C 0.060 3.940 21 N -0.854 5.854 22 Si 0.865 3.135 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.254 1.254 26 C 0.177 3.823 27 C 0.204 3.796 28 N -0.439 5.439 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.116 0.884 43 H 0.278 0.722 44 H 0.113 0.887 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 2.716 23.767 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C 0.022 3.978 4 H 0.092 0.908 5 C -0.237 4.237 6 O -0.210 6.210 7 C 0.105 3.895 8 C -0.234 4.234 9 C -0.097 4.097 10 C -0.177 4.177 11 C -0.088 4.088 12 C -0.092 4.092 13 C -0.055 4.055 14 C -0.222 4.222 15 C 0.296 3.704 16 O -0.435 6.435 17 N -0.179 5.179 18 C -0.443 4.443 19 H 0.128 0.872 20 C -0.147 4.147 21 N -0.489 5.489 22 Si 0.691 3.309 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.177 1.177 26 C 0.050 3.950 27 C -0.115 4.115 28 N -0.118 5.118 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.134 0.866 43 H 0.088 0.912 44 H 0.130 0.870 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.692 2.662 23.035 23.658 hybrid contribution -1.086 0.605 0.382 1.301 sum 3.606 3.267 23.417 23.917 Atomic orbital electron populations 1.21771 0.94946 1.02083 1.02483 1.21650 0.97051 0.93771 1.03279 1.22570 0.95056 0.94160 0.85967 0.90811 1.22362 0.95188 1.03114 1.03046 1.86140 1.82816 1.17018 1.34983 1.19137 0.94156 0.82809 0.93443 1.21172 1.08790 0.95468 0.97964 1.20995 0.96977 0.93458 0.98238 1.20963 1.03293 1.00096 0.93383 1.21323 0.96857 0.92376 0.98244 1.18486 1.04928 0.92913 0.92848 1.22109 0.93146 1.00358 0.89843 1.22272 1.04725 1.00031 0.95188 1.16953 0.82803 0.87610 0.82994 1.90721 1.54978 1.14007 1.83769 1.43560 1.60309 1.01862 1.12145 1.19109 1.10840 1.17017 0.97351 0.87191 1.25472 0.97153 0.97153 0.94944 1.69674 1.29666 1.43588 1.05966 0.87099 0.82653 0.79687 0.81440 1.19576 1.20542 1.17745 1.19635 0.87700 0.83800 1.03817 1.30141 0.95529 0.93036 0.92779 1.81160 1.11328 1.10032 1.09287 0.91530 0.92338 0.93037 0.90429 0.90210 0.91878 0.91073 0.91130 0.85306 0.85966 0.85776 0.84932 0.84315 0.86637 0.91183 0.87020 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.81 37.16 0.36 -1.04 16 2 C -0.12 -1.00 5.64 -26.73 -0.15 -1.15 16 3 C 0.08 0.72 2.21 -26.73 -0.06 0.66 16 4 H 0.07 0.59 6.09 -51.93 -0.32 0.27 16 5 C -0.18 -1.42 9.26 37.16 0.34 -1.08 16 6 O -0.30 -3.81 8.51 -18.77 -0.16 -3.97 16 7 C 0.15 1.95 6.65 -38.63 -0.26 1.70 16 8 C -0.22 -2.24 8.39 -39.49 -0.33 -2.57 16 9 C -0.08 -0.75 10.03 -39.49 -0.40 -1.15 16 10 C -0.16 -1.64 10.02 -39.63 -0.40 -2.04 16 11 C -0.07 -0.86 9.41 -39.12 -0.37 -1.23 16 12 C -0.09 -1.30 5.88 -104.93 -0.62 -1.92 16 13 C -0.03 -0.58 9.17 -37.18 -0.34 -0.92 16 14 C -0.20 -3.64 8.32 -39.32 -0.33 -3.97 16 15 C 0.50 11.58 7.34 -14.90 -0.11 11.47 16 16 O -0.55 -14.81 16.00 5.12 0.08 -14.73 16 17 N -0.46 -10.59 2.13 -121.14 -0.26 -10.85 16 18 C -0.32 -8.58 9.35 -15.04 -0.14 -8.72 16 19 H 0.11 3.40 7.94 -52.49 -0.42 2.99 16 20 C 0.06 1.57 5.34 -17.44 -0.09 1.48 16 21 N -0.85 -23.69 13.95 55.50 0.77 -22.91 16 22 Si 0.87 18.37 24.81 -169.99 -4.22 14.15 16 23 H -0.27 -5.16 6.74 56.52 0.38 -4.78 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.25 -5.11 7.09 56.52 0.40 -4.71 16 26 C 0.18 3.29 4.08 -6.83 -0.03 3.26 16 27 C 0.20 3.94 15.39 -20.68 -0.32 3.62 16 28 N -0.44 -9.03 18.55 42.25 0.78 -8.25 16 29 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.52 7.30 -51.93 -0.38 0.14 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.13 1.06 5.57 -52.48 -0.29 0.76 16 38 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.47 6.17 -52.49 -0.32 1.15 16 41 H 0.14 2.60 7.03 -52.48 -0.37 2.23 16 42 H 0.12 1.72 4.10 -52.49 -0.22 1.50 16 43 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.11 2.10 3.47 -51.93 -0.18 1.92 16 45 H 0.11 1.55 6.42 -51.93 -0.33 1.21 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -32.47 376.37 -6.32 -38.79 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.77 Total: 5.69 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -3.23 Total: -3.60 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 1.30 Total: -42.01 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.08 Total: -18.70 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.22 Total: 14.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.47 -6.32 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105597932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.036 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds