Wall clock time and date at job start Tue Mar 31 2020 15:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.09002 * 109.47086 * 55.00283 * 3 2 1 5 5 C 1.52998 * 109.47366 * 175.00255 * 3 2 1 6 6 O 1.42902 * 109.47234 * 295.00535 * 3 2 1 7 7 C 1.35689 * 117.00059 * 152.24669 * 6 3 2 8 8 C 1.38593 * 120.16183 * 4.61725 * 7 6 3 9 9 C 1.38139 * 120.11209 * 180.02562 * 8 7 6 10 10 C 1.38580 * 120.44430 * 0.02562 * 9 8 7 11 11 C 1.37747 * 120.32014 * 359.97438 * 10 9 8 12 12 C 1.39961 * 119.87720 * 359.72427 * 11 10 9 13 13 C 1.46885 * 120.21741 * 180.27579 * 12 11 10 14 14 C 1.35158 * 119.99890 * 0.27317 * 13 12 11 15 15 C 1.41788 * 119.99622 * 180.02562 * 14 13 12 16 16 O 1.21779 * 120.00531 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99653 * 180.02562 * 15 14 13 18 18 C 1.36749 * 119.99994 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00051 * 320.52740 * 18 17 15 20 20 C 1.39097 * 119.99923 * 140.53108 * 18 17 15 21 21 N 1.31351 * 119.99884 * 162.37163 * 20 18 17 22 22 Si 1.86797 * 119.99999 * 342.36168 * 20 18 17 23 23 H 1.48505 * 109.46770 * 95.37813 * 22 20 18 24 24 H 1.48504 * 109.47328 * 215.37372 * 22 20 18 25 25 H 1.48492 * 109.47358 * 335.37401 * 22 20 18 26 26 C 1.46500 * 120.00210 * 359.97438 * 17 15 14 27 27 C 1.47197 * 109.47308 * 84.34497 * 26 17 15 28 28 N 9.90199 * 90.76415 * 311.86818 * 2 1 3 29 29 H 1.08993 * 109.47490 * 59.99694 * 1 2 3 30 30 H 1.08999 * 109.46723 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46772 * 299.99344 * 1 2 3 32 32 H 1.08998 * 109.47283 * 240.00648 * 2 1 3 33 33 H 1.08998 * 109.47856 * 120.00047 * 2 1 3 34 34 H 1.09004 * 109.47303 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47321 * 300.00107 * 5 3 2 36 36 H 1.09002 * 109.46995 * 59.99973 * 5 3 2 37 37 H 1.08003 * 119.94595 * 0.03060 * 8 7 6 38 38 H 1.08006 * 119.78428 * 180.02562 * 9 8 7 39 39 H 1.08000 * 119.83931 * 180.02562 * 10 9 8 40 40 H 1.08001 * 120.06122 * 180.02562 * 11 10 9 41 41 H 1.08007 * 120.00170 * 180.28092 * 13 12 11 42 42 H 1.07997 * 120.00040 * 0.02562 * 14 13 12 43 43 H 0.96995 * 119.99668 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.47112 * 204.34640 * 26 17 15 45 45 H 1.09002 * 109.46990 * 324.34212 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0815 -1.2210 7 6 1.4962 3.4278 -1.1862 8 6 1.7847 4.1352 -0.0298 9 6 1.6151 5.5057 0.0047 10 6 1.1560 6.1848 -1.1126 11 6 0.8638 5.4997 -2.2714 12 6 1.0367 4.1118 -2.3232 13 6 0.7332 3.3746 -3.5569 14 6 0.2907 4.0373 -4.6486 15 6 -0.0028 3.3255 -5.8393 16 8 0.1434 2.1172 -5.8782 17 7 -0.4435 3.9864 -6.9281 18 6 -0.7261 3.3001 -8.0766 19 1 -0.0900 2.4851 -8.3890 20 6 -1.8326 3.6517 -8.8426 21 7 -1.9214 3.2518 -10.0905 22 14 -3.1925 4.6925 -8.0963 23 1 -2.9618 6.1211 -8.4295 24 1 -4.5034 4.2617 -8.6451 25 1 -3.1934 4.5220 -6.6212 26 6 -0.6200 5.4400 -6.8811 27 6 0.6663 6.0996 -7.1586 28 7 1.6621 6.6082 -7.3732 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9281 2.4721 0.1261 35 1 3.8533 0.9570 1.0570 36 1 3.9994 0.9054 -0.7162 37 1 2.1426 3.6141 0.8459 38 1 1.8419 6.0517 0.9086 39 1 1.0274 7.2564 -1.0749 40 1 0.5067 6.0332 -3.1399 41 1 0.8636 2.3030 -3.5916 42 1 0.1606 5.1088 -4.6140 43 1 -2.6932 3.4967 -10.6245 44 1 -1.3520 5.7415 -7.6304 45 1 -0.9718 5.7315 -5.8915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105597932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:29 Heat of formation + Delta-G solvation = -6.428402 kcal Electronic energy + Delta-G solvation = -27329.519247 eV Core-core repulsion = 23505.980198 eV Total energy + Delta-G solvation = -3823.539049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44664 -40.94136 -38.83682 -37.93182 -36.53132 -35.23454 -34.92654 -34.15951 -31.22213 -30.96139 -30.40701 -29.42619 -27.43670 -25.09832 -24.86728 -23.64309 -22.19718 -21.52457 -20.43699 -19.71553 -19.41455 -18.54538 -18.08942 -17.40175 -16.84679 -16.51266 -16.31300 -15.85026 -15.76627 -15.61822 -15.25280 -14.86595 -14.78967 -14.61575 -14.54848 -14.36183 -14.18182 -14.03320 -13.95268 -13.62008 -13.36155 -13.27462 -13.01763 -12.85033 -12.74048 -12.67221 -12.26044 -12.12844 -12.02039 -11.96512 -11.76917 -11.58724 -11.44811 -11.27935 -11.12925 -10.60098 -9.99137 -9.58341 -8.87172 -8.49921 -6.21097 -0.43096 0.48735 1.01565 1.25556 1.39007 1.50406 1.52489 1.69956 2.21486 2.21734 2.40403 2.77369 2.83027 2.91538 3.24378 3.64588 3.70252 3.79414 3.91581 3.99161 4.02996 4.10017 4.14417 4.17816 4.32121 4.36666 4.43486 4.51972 4.54476 4.64637 4.66841 4.81378 4.93282 4.99526 5.04618 5.06090 5.18221 5.20073 5.24073 5.35710 5.42110 5.55127 5.58929 5.64754 5.87288 6.02488 6.41751 6.49575 6.51856 6.85971 7.14170 7.73317 8.66700 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.003322 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.269742 B = 8426.546941 C = 9452.566620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C 0.071 3.929 4 H 0.093 0.907 5 C -0.176 4.176 6 O -0.325 6.325 7 C 0.143 3.857 8 C -0.218 4.218 9 C -0.062 4.062 10 C -0.161 4.161 11 C -0.069 4.069 12 C -0.133 4.133 13 C -0.001 4.001 14 C -0.228 4.228 15 C 0.502 3.498 16 O -0.611 6.611 17 N -0.467 5.467 18 C -0.342 4.342 19 H 0.041 0.959 20 C 0.011 3.989 21 N -0.909 5.909 22 Si 0.934 3.066 23 H -0.223 1.223 24 H -0.285 1.285 25 H -0.231 1.231 26 C 0.177 3.823 27 C 0.219 3.781 28 N -0.463 5.463 29 H 0.034 0.966 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.156 0.844 43 H 0.284 0.716 44 H 0.117 0.883 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 6.414 28.561 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.016 3.984 4 H 0.111 0.889 5 C -0.233 4.233 6 O -0.239 6.239 7 C 0.097 3.903 8 C -0.236 4.236 9 C -0.080 4.080 10 C -0.179 4.179 11 C -0.087 4.087 12 C -0.134 4.134 13 C -0.022 4.022 14 C -0.249 4.249 15 C 0.297 3.703 16 O -0.497 6.497 17 N -0.188 5.188 18 C -0.469 4.469 19 H 0.059 0.941 20 C -0.192 4.192 21 N -0.545 5.545 22 Si 0.754 3.246 23 H -0.147 1.147 24 H -0.211 1.211 25 H -0.154 1.154 26 C 0.051 3.949 27 C -0.100 4.100 28 N -0.142 5.142 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.162 0.838 41 H 0.126 0.874 42 H 0.173 0.827 43 H 0.093 0.907 44 H 0.135 0.865 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.075 6.392 27.836 28.849 hybrid contribution -0.699 -0.688 -0.882 1.319 sum 3.376 5.704 26.953 27.756 Atomic orbital electron populations 1.21756 0.95624 1.02245 1.01574 1.21705 0.96443 0.93714 1.03843 1.22861 0.96004 0.94272 0.85269 0.88944 1.22348 0.94062 1.03119 1.03773 1.86131 1.82946 1.17515 1.37291 1.19398 0.93866 0.83023 0.94038 1.21474 1.08324 0.96141 0.97667 1.21518 0.94082 0.93105 0.99250 1.21351 1.02364 1.01603 0.92618 1.21555 0.96153 0.91322 0.99647 1.18481 1.08653 0.94118 0.92146 1.22136 0.89830 0.99171 0.91100 1.22032 1.08343 1.01487 0.93000 1.17780 0.80980 0.87227 0.84296 1.90678 1.57248 1.16846 1.84937 1.43497 1.60646 1.03916 1.10770 1.18612 1.11550 1.17377 0.99408 0.94058 1.26395 0.99277 0.98844 0.94721 1.69813 1.30814 1.46010 1.07851 0.86040 0.77296 0.79821 0.81473 1.14669 1.21120 1.15356 1.19983 0.87362 0.80354 1.07195 1.30206 0.95376 0.92453 0.91958 1.81173 1.11846 1.10949 1.10242 0.94691 0.91722 0.91558 0.92256 0.87181 0.91987 0.88326 0.92784 0.82938 0.82309 0.82794 0.83791 0.87448 0.82717 0.90670 0.86546 0.81423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.81 71.98 0.71 -2.05 16 2 C -0.12 -1.90 5.64 30.60 0.17 -1.73 16 3 C 0.07 1.20 2.21 30.59 0.07 1.27 16 4 H 0.09 1.19 6.09 -2.39 -0.01 1.17 16 5 C -0.18 -2.46 9.26 71.98 0.67 -1.79 16 6 O -0.32 -8.39 8.51 -90.08 -0.77 -9.15 16 7 C 0.14 3.50 6.65 22.89 0.15 3.65 16 8 C -0.22 -3.73 8.39 22.33 0.19 -3.54 16 9 C -0.06 -0.86 10.03 22.33 0.22 -0.63 16 10 C -0.16 -2.53 10.02 22.24 0.22 -2.30 16 11 C -0.07 -1.47 9.41 22.57 0.21 -1.25 16 12 C -0.13 -3.66 5.88 -20.06 -0.12 -3.77 16 13 C 0.00 -0.05 9.17 23.83 0.22 0.17 16 14 C -0.23 -8.23 8.32 22.44 0.19 -8.04 16 15 C 0.50 24.10 7.34 85.12 0.63 24.73 16 16 O -0.61 -35.56 16.00 -4.60 -0.07 -35.64 16 17 N -0.47 -22.18 2.13 -655.35 -1.40 -23.58 16 18 C -0.34 -19.82 9.35 84.13 0.79 -19.03 16 19 H 0.04 2.87 7.94 -2.91 -0.02 2.85 16 20 C 0.01 0.57 5.34 84.97 0.45 1.02 16 21 N -0.91 -53.06 13.95 21.69 0.30 -52.75 16 22 Si 0.93 36.82 24.81 68.60 1.70 38.52 16 23 H -0.22 -7.19 6.74 99.48 0.67 -6.52 16 24 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.23 -8.25 7.09 99.48 0.71 -7.54 16 26 C 0.18 6.15 4.08 84.57 0.35 6.49 16 27 C 0.22 8.10 15.39 89.41 1.38 9.48 16 28 N -0.46 -18.56 18.55 20.04 0.37 -18.19 16 29 H 0.03 0.83 7.82 -2.39 -0.02 0.81 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.88 7.30 -2.38 -0.02 0.86 16 35 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.15 1.81 5.57 -2.91 -0.02 1.80 16 38 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.14 2.61 6.17 -2.91 -0.02 2.59 16 41 H 0.11 4.38 7.03 -2.91 -0.02 4.36 16 42 H 0.16 4.17 4.10 -2.91 -0.01 4.16 16 43 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.12 3.99 3.47 -2.38 -0.01 3.98 16 45 H 0.17 3.89 6.42 -2.39 -0.02 3.88 16 Total: -1.00 -81.41 376.37 7.61 -73.80 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.99 Total: 24.32 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.49 Total: 2.67 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -0.72 Total: -94.52 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.84 Total: -44.79 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 1.70 Total: 38.52 kcal Total: -81.41 7.61 -73.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105597932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.370 kcal (2) G-P(sol) polarization free energy of solvation -81.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds