Wall clock time and date at job start Tue Mar 31 2020 15:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47240 * 2 1 4 4 H 1.09003 * 109.47159 * 304.99512 * 3 2 1 5 5 C 1.53000 * 109.46879 * 184.99831 * 3 2 1 6 6 O 1.42898 * 109.47516 * 64.99890 * 3 2 1 7 7 C 1.35687 * 117.00217 * 205.30685 * 6 3 2 8 8 C 1.38593 * 120.16378 * 354.66972 * 7 6 3 9 9 C 1.38147 * 120.11362 * 180.02562 * 8 7 6 10 10 C 1.38576 * 120.43977 * 0.02562 * 9 8 7 11 11 C 1.37745 * 120.32520 * 0.02562 * 10 9 8 12 12 C 1.39961 * 119.87650 * 359.71976 * 11 10 9 13 13 C 1.46884 * 120.21521 * 180.27722 * 12 11 10 14 14 C 1.35160 * 120.00338 * 0.27506 * 13 12 11 15 15 C 1.41783 * 120.00016 * 180.02562 * 14 13 12 16 16 O 1.21772 * 120.00297 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99714 * 180.02562 * 15 14 13 18 18 C 1.36746 * 120.00136 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00320 * 17.84847 * 18 17 15 20 20 C 1.39101 * 120.00238 * 197.85288 * 18 17 15 21 21 N 1.31336 * 119.99588 * 18.56625 * 20 18 17 22 22 Si 1.86799 * 119.99824 * 198.56972 * 20 18 17 23 23 H 1.48500 * 109.47288 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46920 * 119.99938 * 22 20 18 25 25 H 1.48496 * 109.46683 * 239.99464 * 22 20 18 26 26 C 1.46506 * 120.00222 * 359.97438 * 17 15 14 27 27 C 1.47206 * 109.46657 * 83.84827 * 26 17 15 28 28 N 9.50981 * 61.61506 * 43.12532 * 2 1 3 29 29 H 1.09003 * 109.47323 * 60.00043 * 1 2 3 30 30 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47175 * 300.00427 * 1 2 3 32 32 H 1.08995 * 109.47102 * 239.99562 * 2 1 3 33 33 H 1.09005 * 109.46598 * 119.99873 * 2 1 3 34 34 H 1.08996 * 109.47228 * 60.00102 * 5 3 2 35 35 H 1.08992 * 109.47649 * 299.99762 * 5 3 2 36 36 H 1.09002 * 109.46782 * 179.97438 * 5 3 2 37 37 H 1.08000 * 119.93925 * 0.02772 * 8 7 6 38 38 H 1.07995 * 119.77408 * 179.97438 * 9 8 7 39 39 H 1.08001 * 119.83400 * 180.02562 * 10 9 8 40 40 H 1.08001 * 120.05936 * 180.02562 * 11 10 9 41 41 H 1.08009 * 119.99822 * 180.27172 * 13 12 11 42 42 H 1.07998 * 119.99468 * 0.02562 * 14 13 12 43 43 H 0.97003 * 119.99765 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.47321 * 203.84849 * 26 17 15 45 45 H 1.08997 * 109.46978 * 323.85171 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4442 -0.1257 6 8 1.6620 2.0814 1.2210 7 6 1.5461 3.4331 1.1987 8 6 1.8962 4.1435 0.0613 9 6 1.7784 5.5197 0.0400 10 6 1.3109 6.2017 1.1521 11 6 0.9588 5.5139 2.2924 12 6 1.0679 4.1190 2.3270 13 6 0.6887 3.3776 3.5370 14 6 0.2275 4.0420 4.6199 15 6 -0.1379 3.3263 5.7881 16 8 -0.0368 2.1131 5.8156 17 7 -0.5982 3.9888 6.8678 18 6 -0.9502 3.2987 7.9946 19 1 -0.6026 2.2864 8.1387 20 6 -1.7562 3.9005 8.9554 21 7 -2.4718 4.9569 8.6441 22 14 -1.8207 3.2062 10.6884 23 1 -0.9294 2.0219 10.7807 24 1 -1.3708 4.2413 11.6534 25 1 -3.2136 2.8030 11.0085 26 6 -0.7205 5.4484 6.8345 27 6 -1.9994 5.8194 6.2070 28 7 -2.9909 6.1064 5.7193 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.8532 0.9568 -1.0570 35 1 3.9994 0.9052 0.7161 36 1 3.9281 2.4719 -0.1261 37 1 2.2618 3.6201 -0.8098 38 1 2.0531 6.0678 -0.8491 39 1 1.2223 7.2777 1.1245 40 1 0.5947 6.0497 3.1566 41 1 0.7784 2.3016 3.5613 42 1 0.1374 5.1179 4.5954 43 1 -3.0336 5.3768 9.3142 44 1 -0.6880 5.8390 7.8516 45 1 0.1029 5.8689 6.2573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105597934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:34 Heat of formation + Delta-G solvation = -12.186031 kcal Electronic energy + Delta-G solvation = -27309.770008 eV Core-core repulsion = 23485.981289 eV Total energy + Delta-G solvation = -3823.788719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40106 -40.74673 -38.80880 -37.61707 -36.19927 -35.20384 -34.84537 -33.75693 -31.19446 -30.92565 -30.33432 -29.18892 -27.12597 -25.07275 -24.91972 -23.66449 -22.23312 -21.54509 -19.96157 -19.62607 -19.34261 -18.40013 -18.00610 -17.10390 -16.57991 -16.49323 -16.26105 -15.86660 -15.73668 -15.39035 -15.05060 -14.83083 -14.74242 -14.53999 -14.36753 -14.32495 -13.94552 -13.85047 -13.47527 -13.32277 -13.18876 -13.05086 -12.93611 -12.82763 -12.66966 -12.37426 -12.27217 -12.11595 -12.05270 -12.01853 -11.90905 -11.58382 -11.45051 -11.26305 -11.13337 -10.51806 -9.97162 -9.56309 -8.84118 -8.44819 -5.96362 -0.37564 0.49741 1.05732 1.45202 1.46937 1.60110 1.88119 2.18398 2.23838 2.34142 2.49470 2.91811 3.07141 3.17286 3.59191 3.68953 3.76275 3.84189 3.94575 4.02663 4.12112 4.19527 4.27560 4.33956 4.43393 4.51694 4.55111 4.62778 4.65103 4.69290 4.83285 4.89204 4.94880 5.02783 5.04083 5.09578 5.18116 5.24235 5.30105 5.36005 5.43715 5.48677 5.57076 5.69002 5.89005 6.06231 6.41300 6.52998 6.97027 7.09228 7.30642 7.92609 8.58374 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.003089 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.072223 B = 9061.170771 C =10246.393985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.070 3.930 4 H 0.088 0.912 5 C -0.176 4.176 6 O -0.325 6.325 7 C 0.140 3.860 8 C -0.215 4.215 9 C -0.065 4.065 10 C -0.161 4.161 11 C -0.074 4.074 12 C -0.127 4.127 13 C -0.019 4.019 14 C -0.213 4.213 15 C 0.471 3.529 16 O -0.635 6.635 17 N -0.444 5.444 18 C -0.338 4.338 19 H 0.082 0.918 20 C 0.005 3.995 21 N -0.888 5.888 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.258 1.258 25 H -0.286 1.286 26 C 0.220 3.780 27 C 0.258 3.742 28 N -0.506 5.506 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.145 0.855 43 H 0.278 0.722 44 H 0.131 0.869 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.219 2.265 -19.185 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.015 3.985 4 H 0.106 0.894 5 C -0.233 4.233 6 O -0.239 6.239 7 C 0.094 3.906 8 C -0.234 4.234 9 C -0.083 4.083 10 C -0.179 4.179 11 C -0.092 4.092 12 C -0.128 4.128 13 C -0.041 4.041 14 C -0.233 4.233 15 C 0.266 3.734 16 O -0.524 6.524 17 N -0.161 5.161 18 C -0.465 4.465 19 H 0.100 0.900 20 C -0.198 4.198 21 N -0.526 5.526 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.183 1.183 25 H -0.213 1.213 26 C 0.094 3.906 27 C -0.060 4.060 28 N -0.187 5.187 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.162 0.838 43 H 0.088 0.912 44 H 0.149 0.851 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.633 2.098 -19.573 22.865 hybrid contribution -0.293 -0.720 1.417 1.617 sum 11.339 1.378 -18.155 21.450 Atomic orbital electron populations 1.21768 0.96019 1.02188 1.01360 1.21687 0.96075 0.93736 1.03991 1.22853 0.96262 0.94220 0.85138 0.89412 1.22359 0.93746 1.03293 1.03870 1.86125 1.83283 1.16916 1.37548 1.19359 0.94243 0.82930 0.94074 1.21485 1.07951 0.95983 0.97943 1.21492 0.94681 0.93153 0.98962 1.21329 1.02160 1.01531 0.92861 1.21511 0.96552 0.91483 0.99646 1.18502 1.07587 0.93829 0.92901 1.22026 0.91774 0.99049 0.91226 1.22013 1.06300 1.01018 0.93993 1.17545 0.84188 0.87393 0.84281 1.90621 1.61778 1.16093 1.83917 1.43736 1.55104 1.05242 1.12042 1.19733 1.30583 1.00425 0.95793 0.89988 1.26002 0.93316 0.96913 1.03548 1.69887 1.24506 1.22674 1.35580 0.84890 0.77577 0.78673 0.77265 1.19678 1.18286 1.21252 1.19164 0.86851 0.81496 1.03086 1.29967 0.95048 0.91332 0.89630 1.81126 1.11752 1.10739 1.15044 0.91769 0.91624 0.95046 0.87014 0.92000 0.88350 0.92505 0.91780 0.82835 0.82241 0.82975 0.84410 0.87593 0.83755 0.91178 0.85125 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.81 71.98 0.71 -2.42 16 2 C -0.12 -2.01 5.64 30.59 0.17 -1.84 16 3 C 0.07 1.28 2.22 30.59 0.07 1.35 16 4 H 0.09 1.30 6.28 -2.39 -0.01 1.29 16 5 C -0.18 -2.49 9.18 71.98 0.66 -1.83 16 6 O -0.32 -8.98 8.52 -90.06 -0.77 -9.74 16 7 C 0.14 3.76 6.62 22.89 0.15 3.91 16 8 C -0.22 -4.13 8.25 22.33 0.18 -3.95 16 9 C -0.07 -1.06 10.03 22.33 0.22 -0.83 16 10 C -0.16 -3.01 10.02 22.23 0.22 -2.79 16 11 C -0.07 -1.85 9.41 22.57 0.21 -1.64 16 12 C -0.13 -3.91 5.88 -20.06 -0.12 -4.02 16 13 C -0.02 -0.74 9.17 23.83 0.22 -0.52 16 14 C -0.21 -8.51 8.30 22.44 0.19 -8.33 16 15 C 0.47 23.77 7.34 85.12 0.62 24.40 16 16 O -0.63 -37.48 15.75 -4.58 -0.07 -37.55 16 17 N -0.44 -22.01 2.59 -655.34 -1.70 -23.71 16 18 C -0.34 -18.35 9.33 84.13 0.79 -17.57 16 19 H 0.08 4.83 7.36 -2.91 -0.02 4.81 16 20 C 0.00 0.24 4.94 84.97 0.42 0.66 16 21 N -0.89 -44.68 9.33 21.69 0.20 -44.48 16 22 Si 0.99 40.72 29.59 68.60 2.03 42.75 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 26 C 0.22 8.83 4.78 84.57 0.40 9.23 16 27 C 0.26 11.51 13.31 89.38 1.19 12.69 16 28 N -0.51 -24.38 18.58 20.08 0.37 -24.01 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 0.83 7.82 -2.38 -0.02 0.82 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.91 6.96 -2.39 -0.02 0.89 16 37 H 0.15 2.09 5.44 -2.91 -0.02 2.07 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.14 3.19 6.17 -2.91 -0.02 3.17 16 41 H 0.11 4.64 7.03 -2.91 -0.02 4.61 16 42 H 0.15 4.72 4.09 -2.91 -0.01 4.71 16 43 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 44 H 0.13 5.28 6.35 -2.39 -0.02 5.27 16 45 H 0.14 3.98 6.45 -2.39 -0.02 3.96 16 Total: -1.00 -74.69 377.17 7.40 -67.30 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.02 Total: 22.94 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.31 Total: 6.51 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -1.12 Total: -92.20 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.84 Total: -47.30 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -74.69 7.40 -67.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105597934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.109 kcal (2) G-P(sol) polarization free energy of solvation -74.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds