Wall clock time and date at job start Tue Mar 31 2020 16:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52987 * 109.47351 * 2 1 4 4 N 1.46497 * 109.46979 * 120.00300 * 2 1 3 5 5 C 1.34779 * 120.00488 * 154.99949 * 4 2 1 6 6 O 1.21280 * 119.99367 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00378 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47358 * 59.99515 * 7 5 4 9 9 C 1.53006 * 109.46866 * 299.99920 * 7 5 4 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.46991 * 60.00378 * 10 9 7 12 12 C 1.52996 * 109.47131 * 299.99311 * 11 10 9 13 13 H 1.08996 * 109.47452 * 300.00000 * 12 11 10 14 14 N 1.46507 * 109.47258 * 179.97438 * 12 11 10 15 15 C 1.34778 * 119.99609 * 85.00044 * 14 12 11 16 16 O 1.21282 * 120.00113 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99867 * 180.02562 * 15 14 12 18 18 S 1.80998 * 109.47177 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00102 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00027 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00244 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99803 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46601 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46956 * 120.00168 * 23 21 19 26 26 H 1.48493 * 109.46961 * 240.00225 * 23 21 19 27 27 C 1.52997 * 109.47078 * 180.02562 * 7 5 4 28 28 H 1.08999 * 109.47267 * 299.99977 * 1 2 3 29 29 H 1.09001 * 109.47274 * 60.00117 * 1 2 3 30 30 H 1.09001 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46811 * 239.99233 * 2 1 3 32 32 H 1.08998 * 109.47540 * 299.99989 * 3 2 1 33 33 H 1.09004 * 109.47789 * 59.99832 * 3 2 1 34 34 H 1.08996 * 109.47744 * 179.97438 * 3 2 1 35 35 H 0.97003 * 119.99956 * 334.99161 * 4 2 1 36 36 H 1.08993 * 109.46955 * 300.00219 * 9 7 5 37 37 H 1.09000 * 109.47050 * 60.00048 * 9 7 5 38 38 H 1.09002 * 109.46719 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.47839 * 299.99931 * 10 9 7 40 40 H 1.09001 * 109.47289 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47611 * 59.99933 * 11 10 9 42 42 H 0.97001 * 120.00071 * 265.00501 * 14 12 11 43 43 H 1.08999 * 109.47030 * 300.00073 * 17 15 14 44 44 H 1.08993 * 109.46971 * 59.99841 * 17 15 14 45 45 H 0.96995 * 119.99872 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.47153 * 299.99793 * 27 7 5 47 47 H 1.08996 * 109.46952 * 59.99965 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2402 -1.2593 1.1944 6 8 3.9354 -1.1995 0.2024 7 6 3.7427 -1.9693 2.4251 8 1 3.0702 -2.7912 2.6705 9 6 3.7944 -0.9856 3.5959 10 6 4.3040 -1.7066 4.8454 11 6 5.7064 -2.2576 4.5800 12 6 5.6547 -3.2412 3.4092 13 1 4.9819 -4.0630 3.6544 14 7 6.9977 -3.7684 3.1546 15 6 7.4502 -4.8269 3.8557 16 8 6.7454 -5.3431 4.6969 17 6 8.8319 -5.3688 3.5942 18 16 9.1430 -6.7794 4.6849 19 6 10.7772 -7.2021 4.1797 20 1 11.2680 -6.6308 3.4057 21 6 11.4344 -8.2687 4.7774 22 7 10.8365 -8.9647 5.7212 23 14 13.1672 -8.7164 4.2423 24 1 13.6110 -7.7860 3.1734 25 1 14.0867 -8.6102 5.4035 26 1 13.1815 -10.1083 3.7252 27 6 5.1455 -2.5193 2.1595 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.4622 -0.7387 1.9895 36 1 4.4669 -0.1637 3.3505 37 1 2.7952 -0.5934 3.7853 38 1 4.3404 -1.0060 5.6797 39 1 3.6312 -2.5283 5.0907 40 1 6.0697 -2.7709 5.4703 41 1 6.3793 -1.4359 4.3349 42 1 7.5613 -3.3556 2.4816 43 1 8.9055 -5.6901 2.5553 44 1 9.5700 -4.5903 3.7869 45 1 11.2955 -9.7102 6.1386 46 1 5.1091 -3.2199 1.3252 47 1 5.8177 -1.6971 1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116058097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:23 Heat of formation + Delta-G solvation = -108.247192 kcal Electronic energy + Delta-G solvation = -25413.470668 eV Core-core repulsion = 21720.960376 eV Total energy + Delta-G solvation = -3692.510292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.69831 -39.39812 -37.69797 -36.27597 -34.08812 -32.40812 -32.17647 -30.91450 -30.27223 -28.07775 -27.70468 -25.45936 -24.35555 -22.63642 -21.71654 -20.85653 -20.34408 -19.85833 -17.87014 -17.51862 -16.68746 -16.22156 -15.80217 -15.52332 -15.09186 -14.93940 -14.78539 -14.67161 -14.26108 -14.07242 -13.92243 -13.53507 -13.36085 -13.13718 -12.85361 -12.79098 -12.64171 -12.59716 -12.44750 -11.91601 -11.85487 -11.59687 -11.45169 -11.42162 -11.05516 -11.01440 -10.99491 -10.78564 -10.74921 -10.66218 -9.95698 -9.77769 -9.48588 -9.32372 -9.05695 -8.81876 -8.20592 -6.47330 -6.19900 -3.89912 2.34140 2.74654 3.08648 3.14268 3.23160 3.30083 3.35354 3.74051 4.19496 4.22524 4.38596 4.42580 4.49690 4.58412 4.76269 4.83936 4.92291 4.96569 5.08190 5.09700 5.15377 5.15698 5.20646 5.24013 5.28745 5.29612 5.38044 5.46035 5.62079 5.63425 5.69872 5.70404 5.78637 5.82527 5.90555 5.93621 5.99635 6.11960 6.18274 6.19192 6.24330 6.72587 7.12705 7.62189 7.78065 7.91038 8.37690 8.66900 9.25739 10.87612 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.001936 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.259438 B =14458.400833 C =14896.871488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 C -0.163 4.163 4 N -0.729 5.729 5 C 0.520 3.480 6 O -0.536 6.536 7 C -0.103 4.103 8 H 0.101 0.899 9 C -0.109 4.109 10 C -0.114 4.114 11 C -0.133 4.133 12 C 0.148 3.852 13 H 0.088 0.912 14 N -0.735 5.735 15 C 0.534 3.466 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.105 4.105 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.267 0.733 46 H 0.077 0.923 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.967 21.903 -8.661 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.222 4.222 4 N -0.382 5.382 5 C 0.307 3.693 6 O -0.412 6.412 7 C -0.125 4.125 8 H 0.119 0.881 9 C -0.147 4.147 10 C -0.152 4.152 11 C -0.172 4.172 12 C 0.043 3.957 13 H 0.106 0.894 14 N -0.388 5.388 15 C 0.320 3.680 16 O -0.393 6.393 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.144 4.144 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.625 20.923 -7.867 31.102 hybrid contribution 1.905 0.524 -1.265 2.346 sum -19.720 21.447 -9.132 30.533 Atomic orbital electron populations 1.22079 0.94114 1.02702 1.02946 1.20936 0.93955 0.93085 0.89029 1.22179 1.02195 0.95761 1.02035 1.46157 1.18095 1.57158 1.16750 1.20702 0.81017 0.78061 0.89563 1.90710 1.56084 1.59303 1.35143 1.21293 0.98821 0.99092 0.93267 0.88068 1.21561 1.01689 0.97581 0.93865 1.21478 0.96829 1.00119 0.96813 1.21976 0.96933 0.98902 0.99386 1.20860 0.84774 0.96131 0.93922 0.89417 1.46055 1.16919 1.33614 1.42192 1.20295 0.88413 0.78855 0.80462 1.90688 1.57827 1.58273 1.32484 1.23541 0.95470 1.05174 1.06293 1.85364 1.19508 1.30890 1.47665 1.22919 1.00607 1.19083 1.25653 0.90879 1.24993 0.98793 0.95198 0.94638 1.70030 1.37433 1.18994 1.23878 0.86117 0.82469 0.78386 0.78531 1.19615 1.20584 1.20575 1.21595 0.94521 1.00741 0.97523 0.92042 0.90933 0.91912 0.89468 0.91685 0.92502 0.92045 0.76608 0.91254 0.91526 0.91243 0.91308 0.90765 0.91773 0.76806 0.89234 0.89252 0.92269 0.90473 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 9.38 37.16 0.35 -0.25 16 2 C 0.13 0.82 3.18 -67.94 -0.22 0.60 16 3 C -0.16 -0.97 9.48 37.15 0.35 -0.62 16 4 N -0.73 -4.53 4.97 -53.81 -0.27 -4.80 16 5 C 0.52 4.74 7.12 -10.98 -0.08 4.67 16 6 O -0.54 -7.05 15.64 5.56 0.09 -6.96 16 7 C -0.10 -0.80 2.53 -91.77 -0.23 -1.03 16 8 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 9 C -0.11 -0.70 5.10 -26.73 -0.14 -0.83 16 10 C -0.11 -0.89 5.92 -26.73 -0.16 -1.05 16 11 C -0.13 -1.43 5.49 -26.73 -0.15 -1.57 16 12 C 0.15 1.74 2.46 -67.90 -0.17 1.58 16 13 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 14 N -0.73 -10.08 5.08 -53.78 -0.27 -10.35 16 15 C 0.53 10.02 7.81 -10.98 -0.09 9.94 16 16 O -0.52 -11.67 15.53 5.56 0.09 -11.59 16 17 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 23 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.11 -1.04 3.96 -26.71 -0.11 -1.15 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.71 7.58 -51.93 -0.39 0.32 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.40 1.47 8.02 -40.82 -0.33 1.15 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.29 7.56 -51.93 -0.39 -0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.40 4.48 8.60 -40.82 -0.35 4.13 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 47 H 0.08 0.77 8.10 -51.93 -0.42 0.34 16 LS Contribution 395.12 15.07 5.95 5.95 Total: -1.00 -36.16 395.12 -9.28 -45.44 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.16 Total: 0.94 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.21 Total: -5.74 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.19 Total: -40.76 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.16 -9.28 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116058097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.808 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds